Rorug06G0225400

SOSS complex subunit B homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007842
Physical Location & Seq
Reverse (-)
36197119 .. 36197536
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0225400.1

Sequence Viewer

Length: 318 bp
ATGGGACTCTTCCATGAGTTCGTTGAAGACAAAGATGTTCGATTGATAGGAGATGAAGATGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTAGATTATCCTGGGGTTGGACCGGAGCACAGTTTTCTGAAAGACTTGGGGCGTGCTGAGTACTACAGCGTTACTAACGATGAAGCATTGGAAGCTTTTAAAAAATTGTCACAACTTGAGGGAATAATTCCAGCTATGGAGATCTCTCATCACTATGCCAATAATGCCTTCAGACGACAGAATTCTTGTTTTCTGTCGTCTGCATTTTTTAAACTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.83

Weight (kDa)

4.92

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 2 cut(s) 191, 230
AluI AGCT 2 cut(s) 191, 230
Alw21I GWGCWC 1 cut(s) 126
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 160
BglII AGATCT 1 cut(s) 237
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 237
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 94, 150
BstDEI CTNAG 2 cut(s) 97, 153
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 188, 260
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 94, 150
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 14
CviJI RGCY 5 cut(s) 63, 76, 96, 191, 230
CviKI_1 RGCY 5 cut(s) 63, 76, 96, 191, 230
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 97, 153
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 2 cut(s) 196, 307
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 86, 233, 252
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 13
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 135, 269
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 92, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 260
HpyF3I CTNAG 2 cut(s) 97, 153
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 78, 93, 120, 132, 240
MaeIII GTNAC 2 cut(s) 166, 204
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 2 cut(s) 38, 68
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 4 cut(s) 66, 200, 222, 277
MluNI TGGCCA 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 2 cut(s) 87, 208
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
MseI TTAA 2 cut(s) 195, 306
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 188, 260
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 2 cut(s) 195, 306
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 126
SetI ASST 2 cut(s) 193, 232
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 4 cut(s) 66, 200, 222, 277
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 40
TasI AATT 4 cut(s) 66, 200, 222, 277
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 2 cut(s) 195, 306
Tru9I TTAA 2 cut(s) 195, 306
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 69, 192
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.