Rroxscaffold_7G00175220

SOSS complex subunit B homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007842
Physical Location & Seq
Forward (+)
14825272 .. 14826010
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175220.1

Sequence Viewer

Length: 315 bp
ATGGTGTCACTGAAAGACATAGTGCCGGCTGCACAGAACAACATAGACACAAAGTTCATACTTTTGGACAAAGGCAGCAAGACTATAGAAGGCCACAACAAGACGTGCTTGGCGCTTGTGGCCGACGAGACTGCCGCAGTTCACTTCCAGCTGTGGGGAGATGAGTGCGATGCATTTGAGCCCGGCGACATTATACAGTTGGCTAATGGCATCTTCTCTTACAACAGGAACAGTCTTGTGCTGAGGGCCGGCAAGAGAGGGAAAGTGGAGAAGGTTGGAGAGTTTACCATGGTTTTTGTTGAGACCCCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.42

Weight (kDa)

5.27

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 154
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 122, 296
AoxI GGCC 3 cut(s) 91, 120, 246
ApeKI GCWGC 2 cut(s) 29, 75
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 183
BanII GRGCYC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 16, 87
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 122, 296
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 3 cut(s) 30, 76, 135
BlsI GCNGC 3 cut(s) 31, 77, 136
Bme1390I CCNGG 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 160, 219
Bpu10I CCTNAGC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 25, 248
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 16, 87
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 3 cut(s) 93, 122, 248
BsiSI CCGG 3 cut(s) 26, 183, 249
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 122, 296
BsnI GGCC 3 cut(s) 93, 122, 248
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 1 cut(s) 135
BspANI GGCC 3 cut(s) 93, 122, 248
BspCNI CTCAG 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 25, 248
BssAI RCCGGY 2 cut(s) 25, 248
BssECI CCNNGG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 198, 233
BstC8I GCNNGC 2 cut(s) 27, 250
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 122, 296
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 16, 87
BsuRI GGCC 3 cut(s) 93, 122, 248
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 27, 250
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 25, 248
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 1 cut(s) 289
CviJI RGCY 7 cut(s) 29, 93, 122, 151, 181, 203, 248
CviKI_1 RGCY 7 cut(s) 29, 93, 122, 151, 181, 203, 248
DdeI CTNAG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 292
FaiI YATR 6 cut(s) 20, 44, 59, 86, 194, 290
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 30, 76, 135
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 30, 76, 135
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 30, 76, 135
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 3 cut(s) 93, 122, 248
HapII CCGG 3 cut(s) 26, 183, 249
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HpaII CCGG 3 cut(s) 26, 183, 249
Hpy166II GTNNAC 2 cut(s) 142, 285
Hpy188I TCNGA 1 cut(s) 314
Hpy8I GTNNAC 2 cut(s) 142, 285
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 83, 265
HpyCH4III ACNGT 2 cut(s) 198, 233
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 32, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 2 cut(s) 25, 248
KroNI GCCGGC 2 cut(s) 27, 250
LpnPI CCDG 5 cut(s) 39, 161, 196, 211, 262
Lsp1109I GCAGC 2 cut(s) 16, 87
LweI GCATC 2 cut(s) 160, 219
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 2 cut(s) 237, 251
Mph1103I ATGCAT 1 cut(s) 175
MroNI GCCGGC 2 cut(s) 25, 248
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 3 cut(s) 26, 183, 249
MspR9I CCNGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 119
NaeI GCCGGC 2 cut(s) 27, 250
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 288
NgoMIV GCCGGC 2 cut(s) 25, 248
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 175
PdiI GCCGGC 2 cut(s) 27, 250
PkrI GCNGC 3 cut(s) 31, 77, 136
PspPI GGNCC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 151
SatI GCNGC 3 cut(s) 30, 76, 135
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 183
SetI ASST 3 cut(s) 107, 153, 276
SfaNI GCATC 2 cut(s) 160, 219
SfcI CTRYAG 1 cut(s) 84
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 198, 233
TaiI ACGT 1 cut(s) 107
TauI GCSGC 1 cut(s) 137
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 29, 75
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.