MD12G1212600.v1.1

SOSS complex subunit B homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0007842
Physical Location & Seq
Reverse (-)
29151544 .. 29152221
678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1212600.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGTGCCACTGAAAGACATAGTGCCAGCAGCACAGAACAACATAAACACAAGGTTCATACTTTTGGACAAAGGCATCGTCAAGACTACAACTACTACTTTATCACAAGCCCAAAACAAGACGTGCTTGGCGCTAGTGGCAGACGAGACTGCGGCGGTTCACTTCCAGCTGTGGGGGAACGAGTGCGACGCCTTTGAGTCCGGTGACATCGTGGAGTTGAGCAATGGCATCTTCTCTTACTGCAGGAACAACCTTTTGCTCAGGGCAGGCAAGAGAGGCAAAATTGAGAAGGTTGGGGAATTTATGATGGCGTACGTTGAGACCCCAAATTTGAGTGAGATTCGTTGGGTTCCTGACCCTAACAATCCCAAGAAGTACATTCAGGAGGCTGTGATTTCCCCACATTCTCGTATATTTCCACCCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

7.7

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 152, 155
AcsI RAATTY 2 cut(s) 299, 328
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 314, 377
AfiI CCNNNNNNNGG 1 cut(s) 172
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 140, 314
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 299, 328
ArsI GACNNNNNNTTYG 4 cut(s) 63, 95, 313, 345
AspLEI GCGC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 140, 314
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 2 cut(s) 30, 153
BlsI GCNGC 2 cut(s) 31, 154
BmgBI CACGTC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 6, 351
BmsI GCATC 2 cut(s) 84, 237
Bpu10I CCTNAGC 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 201
BsiWI CGTACG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 140, 314
Bso31I GGTCTC 1 cut(s) 314
BspACI CCGC 2 cut(s) 152, 155
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 6, 351
BspMAI CTGCAG 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 27, 268
BstDEI CTNAG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 140, 314
BstMWI GCNNNNNNNGC 2 cut(s) 137, 276
BstSFI CTRYAG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 27, 268
CfoI GCGC 1 cut(s) 133
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 313, 376
CviJI RGCY 3 cut(s) 110, 169, 389
CviKI_1 RGCY 3 cut(s) 110, 169, 389
CviQI GTAC 2 cut(s) 313, 376
DdeI CTNAG 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 314
FaiI YATR 5 cut(s) 20, 44, 59, 305, 413
FalI AAGNNNNNCTT 2 cut(s) 110, 142
Fnu4HI GCNGC 2 cut(s) 30, 153
Fsp4HI GCNGC 2 cut(s) 30, 153
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 30, 153
HaeII RGCGCY 1 cut(s) 134
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 2 cut(s) 197, 340
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 82, 353, 383
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 122, 315
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 276
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 122, 315
Hsp92I GRCGYC 1 cut(s) 189
HspAI GCGC 1 cut(s) 131
LpnPI CCDG 8 cut(s) 39, 179, 214, 229, 247, 252, 366, 368
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 84, 237
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 122, 315
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 1 cut(s) 223
MluCI AATT 3 cut(s) 282, 299, 328
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 269, 379
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 137, 276
NlaIV GGNNCC 2 cut(s) 6, 351
NmuCI GTSAC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 340
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 2 cut(s) 31, 154
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 6, 351
PstI CTGCAG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 314, 377
RsaNI GTAC 2 cut(s) 313, 376
SatI GCNGC 2 cut(s) 30, 153
SchI GAGTC 1 cut(s) 206
SetI ASST 6 cut(s) 56, 125, 171, 255, 294, 318
SfaNI GCATC 2 cut(s) 84, 237
SfcI CTRYAG 1 cut(s) 241
Sse9I AATT 3 cut(s) 282, 299, 328
SsiI CCGC 2 cut(s) 152, 155
SspMI CTAG 1 cut(s) 134
TaiI ACGT 2 cut(s) 125, 318
TasI AATT 3 cut(s) 282, 299, 328
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 15
XapI RAATTY 2 cut(s) 299, 328
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.