Prupe.8G268000_v2.0.a1

SOSS complex subunit B homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007842
Physical Location & Seq
Forward (+)
22352375 .. 22353640
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G268000.1

Sequence Viewer

Length: 531 bp
ATGTCGTTTAAAGTCGCGGATTTATCCTCCGCTTCCCTTCTAGAAACACAACTCAACTCATCAATCGAAAGCATTAGTGAGAAACAAAGCAAAGATACATACAGAGAGATGGTGGCACTCAAAGACATAGTGCCAGCAGCACAGAACAACATAGACACAAGGTTCATACTTTTGGACAAAGCCTCTATGAACACATCCTCATCACAAGGCCAAAACAAGACATGCCTGGCACTCGTGGCCGACGAGACGGCGGCGGTCCACTTTCAGCTGTGGGGGGAGGAGTGCGATGCATTCGAGCCCGGTGACATCATACACTTGAGCAATGGGATCTTCTCTTACAGCAGGAACAGTCTTCTGCTGAGGGCGGGCAAGAGAGGCAAAATAGAAAAGGTTGGAGAGTTCACCATGGCATATGTGGAGACACCAAACATGAGTGAGATTCGTTGGGTTCCTGACCCCAACAGCTCTCACAAGTACATACAGGAGGCTGTAATTTCTCCACATTCACGTATATTTCCACCCAAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.63

Weight (kDa)

5.58

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 17, 30, 251, 254, 365
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 476
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 268, 465
AluI AGCT 2 cut(s) 268, 465
Alw26I GTCTC 2 cut(s) 239, 413
AlwI GGATC 1 cut(s) 335
AoxI GGCC 2 cut(s) 208, 237
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 314, 394
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 239, 413
BfaI CTAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 138, 252
BlsI GCNGC 2 cut(s) 139, 253
Bme1390I CCNGG 2 cut(s) 227, 300
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 2 cut(s) 227, 300
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 210, 239
BsiSI CCGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 239, 413
BsmBI CGTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 210, 239
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 5 cut(s) 17, 30, 251, 254, 365
BspANI GGCC 2 cut(s) 210, 239
BspCNI CTCAG 1 cut(s) 351
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 135, 367
BstDEI CTNAG 1 cut(s) 359
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 2 cut(s) 239, 413
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 236, 375
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 225, 298
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 210, 239
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 135, 367
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 222, 406, 430
CviJI RGCY 7 cut(s) 182, 210, 239, 268, 298, 465, 488
CviKI_1 RGCY 7 cut(s) 182, 210, 239, 268, 298, 465, 488
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 225, 409, 433
FatI CATG 3 cut(s) 221, 405, 429
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 138, 252
FokI GGATG 1 cut(s) 181
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 138, 252
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 138, 252
HaeIII GGCC 2 cut(s) 210, 239
HapII CCGG 1 cut(s) 300
Hin1II CATG 3 cut(s) 225, 409, 433
HinfI GANTC 1 cut(s) 439
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 314, 394
Hpy166II GTNNAC 2 cut(s) 259, 402
Hpy188III TCNNGA 2 cut(s) 41, 452
Hpy8I GTNNAC 2 cut(s) 259, 402
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 375
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 3 cut(s) 225, 409, 433
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 7 cut(s) 147, 212, 239, 313, 328, 465, 467
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 2 cut(s) 322, 344
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 7 cut(s) 37, 193, 208, 271, 354, 368, 478
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 227, 300
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 236, 375
NciI CCSGG 1 cut(s) 300
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 327
NlaIII CATG 3 cut(s) 225, 409, 433
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 2 cut(s) 139, 253
Ppu21I YACGTR 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 138, 252
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 227, 300
SduI GDGCHC 1 cut(s) 300
SetI ASST 5 cut(s) 164, 270, 393, 467, 511
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 1 cut(s) 492
SsiI CCGC 5 cut(s) 17, 30, 251, 254, 365
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 225, 298
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 511
TaqI TCGA 2 cut(s) 66, 294
TasI AATT 1 cut(s) 492
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 154, 203
VpaK11BI GGWCC 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 40
XceI RCATGY 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.