Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Reverse (-)

21568160 .. 21568805

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAACACATCCTCATCACAAGGCCAAAACAAGACATGCCTGGCACTCGTGGCCGACGAGACGGCGGCGGTCCACTTTCAGCTGTGGGGGGAGGAGTGCGATGCATTCGAGCCCGGTGACATCATACACTTGAGCAATGGGATCTTCTCTTACAGCAGGAACAGTCTTCTGCTGAGGGCGGGCAAGAGAGGCAAAATAGAAAAGGTTGGAGAGTTCACCATGGCATATGTGGAGACACCAAACATGAGTGAGATTCGTTGGGTTCCTGACCCCAACAGCTCTCACAAGTACATACAGGAGGCTGTAATTTCTCCACATTCACGTATATTTCCACCCAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

6.05

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 68, 179
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	82, 279
AluI	AGCT	2 cut(s)	82, 279
Alw26I	GTCTC	2 cut(s)	53, 227
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	22, 51
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	128, 208
AvaII	GGWCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	53, 227
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	41, 114
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	41, 114
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	24, 53
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	53, 227
BsmBI	CGTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	24, 53
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	65, 68, 179
BspANI	GGCC	2 cut(s)	24, 53
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	2 cut(s)	53, 227
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 189
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	39, 112
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	24, 53
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	36, 220, 244
CviJI	RGCY	6 cut(s)	24, 53, 82, 112, 279, 302
CviKI_1	RGCY	6 cut(s)	24, 53, 82, 112, 279, 302
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	3 cut(s)	39, 223, 247
FaiI	YATR	8 cut(s)	37, 125, 221, 226, 228, 245, 293, 326
FatI	CATG	3 cut(s)	35, 219, 243
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	24, 53
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	3 cut(s)	39, 223, 247
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	128, 208
Hpy166II	GTNNAC	2 cut(s)	73, 216
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	73, 216
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 189
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	39, 223, 247
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	6 cut(s)	26, 53, 127, 142, 279, 281
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	136, 158
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	22, 85, 168, 182, 292
Mph1103I	ATGCAT	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	41, 114
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	50, 189
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	39, 223, 247
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	41, 114
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	84, 207, 281, 325
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	3 cut(s)	65, 68, 179
StyD4I	CCNGG	2 cut(s)	39, 112
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.