Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Reverse (-)

19959499 .. 19960826

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24470.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGTCACTGAAAGACATAGTGCCAGCTGCAGAGAACAACATTGACACAAGGTTCATACTTTTGGACAAAGGCAGCAACACAATAGAAGGCCAGAACAAGACATGCTTGGCGCTTGTGGCCGACGAGACTGCCGCAGTTCACTTCCAGCTGTGGGGAGATGAGTGCGATGCATTTGAGCCCAGCGACATCATTCAGTTGTACAATGGCATCTTCTCTTACAACAGGGGCACTCTTGTGCTGAGGGCTGGCAAGAGAGGGAGAGTGGAGAAGGTTGGAGAGTTTACCATGCTTTTCGTTGAGACGCCCAATATGAGTGAGATTCGCTGGGTTCCTGATCCCAATAACTCGAAGAAGTTCATTCAGGATGCTGTGATTTCGCCTCATTCACGCATCTTTCCACCGAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

5.36

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	154
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	29, 151
AluI	AGCT	2 cut(s)	29, 151
Alw26I	GTCTC	2 cut(s)	122, 296
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	91, 120
ApeKI	GCWGC	2 cut(s)	29, 75
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	16, 87
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcoDI	GTCTC	2 cut(s)	122, 296
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	3 cut(s)	30, 76, 135
BlsI	GCNGC	3 cut(s)	31, 77, 136
BmiI	GGNNCC	1 cut(s)	333
BmsI	GCATC	4 cut(s)	160, 219, 358, 402
Bpu10I	CCTNAGC	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	16, 87
BseYI	CCCAGC	2 cut(s)	182, 327
BshFI	GGCC	2 cut(s)	93, 122
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	122, 296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	93, 122
Bsp1286I	GDGCHC	2 cut(s)	183, 233
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	93, 122
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	201
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	27, 250
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	122, 296
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	16, 87
BsuRI	GGCC	2 cut(s)	93, 122
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	27, 250
CfoI	GCGC	1 cut(s)	115
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	105, 289
CviJI	RGCY	6 cut(s)	29, 93, 122, 151, 181, 248
CviKI_1	RGCY	6 cut(s)	29, 93, 122, 151, 181, 248
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	2 cut(s)	108, 292
FaiI	YATR	5 cut(s)	20, 59, 106, 290, 314
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	2 cut(s)	104, 288
Fnu4HI	GCNGC	3 cut(s)	30, 76, 135
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	30, 76, 135
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	3 cut(s)	30, 76, 135
GsaI	CCCAGC	2 cut(s)	186, 331
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	93, 122
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	108, 292
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	142, 285
Hpy188III	TCNNGA	2 cut(s)	335, 365
Hpy8I	GTNNAC	2 cut(s)	142, 285
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	83, 265
HpyCH4V	TGCA	2 cut(s)	32, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	108, 292
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	39, 107, 161, 196, 211, 234, 313, 348, 350
Lsp1109I	GCAGC	2 cut(s)	16, 87
LweI	GCATC	4 cut(s)	160, 219, 358, 402
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	205, 364
MhlI	GDGCHC	2 cut(s)	183, 233
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	237, 251, 393
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	29, 151
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	108, 292
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	31, 77, 136
PspFI	CCCAGC	2 cut(s)	182, 327
PspN4I	GGNNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	29, 151
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	3 cut(s)	30, 76, 135
Sau3AI	GATC	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	183, 233
SetI	ASST	4 cut(s)	31, 56, 153, 276
SfaNI	GCATC	4 cut(s)	160, 219, 358, 402
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	236
SsiI	CCGC	1 cut(s)	135
TaqI	TCGA	1 cut(s)	350
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	29, 75
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	46, 349
TspRI	CASTG	1 cut(s)	15
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.