Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Forward (+)

25775975 .. 25777963

Gene Structure 1989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAGTTGGGATCCAGACGAATCTACACGACGATGCCGTCGAAGCTCCGATCTTCTTCTTCACTTCTTCCACGTATTCTGCTCCTTTCTCTCTTATTACTCCTTTTCTATTCCTTAATTCTCCGCCGTCCGATTACTTCAAACATTGCCTCTCCTCCGCCGTGCGATCTCTTCTCCGGCAGATGGGTTTTCAATCCAGAAACTCCGAAACCGTTGTACGACGAGACTTGTCCTTTCCACAGAAACGCTTGGAATTGCTTACGGAACAAGCGAGATAATATGGATGTTATCAATTCATGGAGATGGGAGCCCAATGGATGTGGATTGAGTCGAATTGACCCGACCCGGTTTCTAGGGATGATGAGGAACAAGAATGTTGGGTTTGTTGGGGATTCTCTGAATGAGAATTTCTTGGTTTCGTTCTTGTGTATACTTAGAGTGGCTGATCCAAGTGCTATTAAGTGGAAGAAGAAAAAAGCTTGGCGTGGAGCTTACTTCCCTAAGTTCAATGTCACTGTTGCTTATCACAGAGCTGTTCTTCTCGCTAAATATCAGTGGCAGGCGAGATCTTCTGCTGAAGCTAATCAAGACGGAGTGAAAGGAACTTATCGAGTTGATGTTGATGTTCCTGCAAATGAGTGGATCAACGTCACTAGCTTCTATGATGTTCTCATATTTAACTCTGGCCATTGGTGGGGTTACGATAAGTTTCCTAAAGAGACACCTCTTGTCTTCTACCGAAAGGGAAAGCCGATAAATCCTCCTCTTGATATATTACCAGGATTTGAACTAGTTCTTCAAAATATGGTTTCTTATATCCAAAGAGAAGTCCCTGCGAAGACCCTTAAGTTCTGGCGTTTGCAATCACCAAGGCATTTCTATGGTGGTGATTGGAACCAGAATGGAAGTTGTTTGCTCGATAAGCCACTCGAAGAAAACCAGGAACAATGGAGTGAACAAAGAAGCAAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

325

Amino Acids

37.86

Weight (kDa)

9.58

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	54 - 107	1.2e-16	PMR5 N terminal Domain
PC-Esterase	PF13839	109 - 320	5.2e-48	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	430
AciI	CCGC	2 cut(s)	124, 158
AclWI	GGATC	4 cut(s)	6, 19, 440, 650
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	183, 694
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	5 cut(s)	141, 193, 508, 788, 800
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	778, 939
AluBI	AGCT	6 cut(s)	46, 479, 491, 533, 581, 657
AluI	AGCT	6 cut(s)	46, 479, 491, 533, 581, 657
Alw26I	GTCTC	2 cut(s)	218, 713
AlwI	GGATC	4 cut(s)	6, 19, 440, 650
AoxI	GGCC	1 cut(s)	685
ApoI	RAATTY	1 cut(s)	406
Asp700I	GAANNNNTTC	1 cut(s)	792
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	858, 899
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	312
BbsI	GAAGAC	2 cut(s)	724, 845
BccI	CCATC	2 cut(s)	177, 297
BceAI	ACGGC	3 cut(s)	22, 111, 145
BciT130I	CCWGG	2 cut(s)	780, 941
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	218, 713
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	3 cut(s)	353, 654, 791
BfrI	CTTAAG	1 cut(s)	845
BglII	AGATCT	1 cut(s)	566
Bme1390I	CCNGG	3 cut(s)	346, 780, 941
BmiI	GGNNCC	3 cut(s)	13, 309, 896
BmrFI	CCNGG	3 cut(s)	346, 780, 941
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	2 cut(s)	724, 845
BpuMI	CCSGG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 694
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	780, 941
BseDI	CCNNGG	1 cut(s)	869
BseGI	GGATG	3 cut(s)	289, 323, 363
BseLI	CCNNNNNNNGG	2 cut(s)	183, 694
BseMI	GCAATG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	144, 753
BshFI	GGCC	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	177, 346
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	183, 694
BsmAI	GTCTC	2 cut(s)	218, 713
BsmFI	GGGAC	1 cut(s)	815
BsnI	GGCC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
BspACI	CCGC	2 cut(s)	124, 158
BspANI	GGCC	1 cut(s)	687
BspLI	GGNNCC	3 cut(s)	13, 309, 896
BspPI	GGATC	4 cut(s)	6, 19, 440, 650
BspTI	CTTAAG	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	869
BssMI	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
BssNAI	GTATAC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	869
Bst1107I	GTATAC	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	780, 941
Bst4CI	ACNGT	2 cut(s)	213, 517
Bst6I	CTCTTC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	434, 501
BstF5I	GGATG	3 cut(s)	289, 323, 363
BstKTI	GATC	6 cut(s)	14, 53, 169, 448, 569, 645
BstMAI	GTCTC	2 cut(s)	218, 713
BstMBI	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 922
BstNI	CCWGG	2 cut(s)	780, 941
BstSCI	CCNGG	3 cut(s)	344, 778, 939
BstV2I	GAAGAC	2 cut(s)	724, 845
BstX2I	RGATCY	2 cut(s)	11, 566
BstYI	RGATCY	2 cut(s)	11, 566
BstZ17I	GTATAC	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	289, 323, 363
BtsIMutI	CAGTG	2 cut(s)	513, 560
Cac8I	GCNNGC	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	297
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	434, 501
DpnI	GATC	6 cut(s)	13, 52, 168, 447, 568, 644
DpnII	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	2 cut(s)	113, 147
Eco130I	CCWWGG	1 cut(s)	869
Eco24I	GRGCYC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	778, 939
EcoT14I	CCWWGG	1 cut(s)	869
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	1 cut(s)	300
FaiI	YATR	9 cut(s)	281, 298, 431, 663, 674, 773, 806, 816, 882
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	430
FokI	GGATG	3 cut(s)	296, 330, 370
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	3 cut(s)	353, 654, 791
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	2 cut(s)	177, 346
Hin1II	CATG	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	3 cut(s)	21, 328, 392
HpaII	CCGG	2 cut(s)	177, 346
HphI	GGTGA	2 cut(s)	858, 899
Hpy166II	GTNNAC	2 cut(s)	431, 956
Hpy188I	TCNGA	4 cut(s)	50, 132, 207, 399
Hpy188III	TCNNGA	4 cut(s)	15, 197, 587, 767
Hpy8I	GTNNAC	2 cut(s)	431, 956
Hpy99I	CGWCG	3 cut(s)	34, 43, 224
HpyCH4III	ACNGT	2 cut(s)	213, 517
HpyCH4IV	ACGT	2 cut(s)	73, 648
HpyCH4V	TGCA	2 cut(s)	632, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 922
HpyF3I	CTNAG	2 cut(s)	434, 501
HpySE526I	ACGT	2 cut(s)	73, 648
Hsp92II	CATG	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
LmnI	GCTCC	4 cut(s)	51, 87, 307, 488
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	353, 654, 791
MaeII	ACGT	2 cut(s)	73, 648
MaeIII	GTNAC	3 cut(s)	511, 649, 698
MalI	GATC	6 cut(s)	13, 52, 168, 447, 568, 644
MboI	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
MflI	RGATCY	2 cut(s)	11, 566
MhlI	GDGCHC	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	5 cut(s)	117, 253, 292, 333, 406
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	6 cut(s)	160, 165, 357, 735, 771, 774
Mox20I	TGGCCA	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	5 cut(s)	116, 459, 678, 846, 976
MslI	CAYNNNNRTG	3 cut(s)	32, 301, 879
Msp20I	TGGCCA	1 cut(s)	687
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	2 cut(s)	177, 346
MspR9I	CCNGG	3 cut(s)	346, 780, 941
MvaI	CCWGG	2 cut(s)	780, 941
MwoI	GCNNNNNNNGC	2 cut(s)	43, 922
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	3 cut(s)	13, 309, 896
NmuCI	GTSAC	2 cut(s)	511, 649
PcsI	WCGNNNNNNNCGW	3 cut(s)	35, 38, 268
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	2 cut(s)	21, 392
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	778, 939
PspGI	CCWGG	2 cut(s)	778, 939
PspN4I	GGNNCC	3 cut(s)	13, 309, 896
PsuI	RGATCY	2 cut(s)	11, 566
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	3 cut(s)	32, 301, 879
SaqAI	TTAA	5 cut(s)	116, 459, 678, 846, 976
Sau3AI	GATC	6 cut(s)	11, 50, 166, 445, 566, 642
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	3 cut(s)	346, 780, 941
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	9 cut(s)	48, 76, 481, 493, 535, 583, 651, 659, 727
SfaNI	GCATC	1 cut(s)	24
SmiMI	CAYNNNNRTG	3 cut(s)	32, 301, 879
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	5 cut(s)	117, 253, 292, 333, 406
SsiI	CCGC	2 cut(s)	124, 158
SspMI	CTAG	3 cut(s)	353, 654, 791
StyD4I	CCNGG	3 cut(s)	344, 778, 939
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	2 cut(s)	213, 517
TaiI	ACGT	2 cut(s)	76, 651
TaqI	TCGA	5 cut(s)	41, 331, 610, 918, 930
TasI	AATT	5 cut(s)	117, 253, 292, 333, 406
TfiI	GAWTC	2 cut(s)	21, 392
Tru1I	TTAA	5 cut(s)	116, 459, 678, 846, 976
Tru9I	TTAA	5 cut(s)	116, 459, 678, 846, 976
TscAI	CASTG	2 cut(s)	520, 560
TseFI	GTSAC	2 cut(s)	511, 649
Tsp45I	GTSAC	2 cut(s)	511, 649
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	2 cut(s)	277, 606
TspRI	CASTG	2 cut(s)	520, 560
Vha464I	CTTAAG	1 cut(s)	845
XapI	RAATTY	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	3 cut(s)	353, 654, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.