Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

26686216 .. 26689393

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAACCAAATAACAGAAAGAAACACGACTTTGCTGACGACAATGGCTCCGAAGCTACTGTCACCCCTCTTCCAATGGCTCATTCTCCTAACCCTCCTTCTCCTCTTTCTCTACTCCTCACTCCTCTCCTTCCACACATCCTCACCGCAACCCAAAACAATCCCCACTTTACCCTCCTGCAATTTCTTCAATGGCCATTGGGTCCAAGACCCCGACCGCAGACCCATGTACGACGAGAGCTGCCCATTTCACAGGAACGCCTGGAACTGCTTCAGGAACAAGAGGGACAACATGGGTGTCATCAATTCCTGGAAATGGGTTCCTCGTGATTGCGTCTTGCCTCGGATCGACCCGGTTCGGTTTCTGGGTCTGATGAGGAACAGGAACATTGGGTTTGTTGGTGACTCTTTGAATGAGAATTTTCTGGTGTCGTTTTTGTGCGTACTTAGGGTGGCGGATTTGGGGGCTAAGAAGTGGAAGAGGAAAGGGGCTTGGAGAGGTGCCTATTTTCCCAAGTTCAATGTTACGGTGGGGTATCATCGAGCTGTGTTGCTCTCCAAATATGAGTGGCAGCCCAAACAGCATGCAGATGGTGATCAAGATGGACTCAAAGGAATATATCGAGTAGATGTTGATATTCCTTCAGATGATTGGGCAAACATTGGTGATTTCTATGATGTCCTTGTTTTCAACACTGGCCATTGGTGGGGCTTTGATAAATTCCCAAAAGAAACTCCTCTCACTTTCTATCGTGCGGGTGAACCTATATATCCTCCGCTTGATATACTGGGTGGATTTAAAGTAGTTGTTGAGAATATGGCCGCATACATACAAAACAAAATTCCTCTGAAGACATTGAAGTTATGGCGTTTACAATCACCAAGGCATTTTCATGGGGGTGACTGGAATCAAAATGGCAGTTGCTTGTTTAATAAACCCCTTGAGGAGCAACAGCTTGACTTGTGGTTTGATCCCAGCAACAATGGACCAAATAAAGAAGAAAGACTGCTGAATCGTCTCATAGAAGACGCATTGCAAGGAACTGATATTCAATTGCTTAACTTGACTCATCTGAGTGAGTTCAGAGCAGATGCCCATCCAGCAATTTGGTTGGGACAGAAGGATGCCGTCAAAGTCTGGGGCCAGGACTGCATGCACTGGTGCCTACCTGGTGTACCAGATACATGGGTTGACATTTTATCAGAGCTGATCCGTATTGGTTTGGAGCTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

411

Amino Acids

47.58

Weight (kDa)

7.62

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	59 - 111	3.2e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 402	6.2e-70	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	500, 1161
AciI	CCGC	6 cut(s)	146, 217, 455, 755, 776, 822
AclWI	GGATC	3 cut(s)	353, 965, 1204
AcoI	YGGCCR	3 cut(s)	193, 697, 819
AcsI	RAATTY	3 cut(s)	418, 719, 840
AcuI	CTGAAG	3 cut(s)	256, 627, 869
AfaI	GTAC	3 cut(s)	230, 444, 1176
AfiI	CCNNNNNNNGG	2 cut(s)	315, 706
AgsI	TTSAA	6 cut(s)	190, 412, 520, 691, 859, 1052
AjnI	CCWGG	4 cut(s)	260, 308, 1143, 1168
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	6 cut(s)	55, 240, 545, 955, 1207, 1228
AluI	AGCT	6 cut(s)	55, 240, 545, 955, 1207, 1228
Alw26I	GTCTC	1 cut(s)	1022
AlwI	GGATC	3 cut(s)	353, 965, 1204
AoxI	GGCC	4 cut(s)	193, 697, 819, 1141
ApeKI	GCWGC	2 cut(s)	240, 571
ApoI	RAATTY	3 cut(s)	418, 719, 840
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 950, 982
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	202, 986, 1141
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	8 cut(s)	54, 135, 413, 605, 677, 770, 870, 911
AvaII	GGWCC	2 cut(s)	202, 986
BaeI	ACNNNNGTAYC	2 cut(s)	1173, 1206
BalI	TGGCCA	2 cut(s)	195, 699
BanI	GGYRCC	2 cut(s)	500, 1161
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	857, 1032
BbvI	GCAGC	2 cut(s)	227, 583
BccI	CCATC	3 cut(s)	584, 596, 1104
BceAI	ACGGC	1 cut(s)	1112
BciT130I	CCWGG	4 cut(s)	262, 310, 1145, 1170
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	1022
BisI	GCNGC	3 cut(s)	241, 572, 822
BlsI	GCNGC	3 cut(s)	242, 573, 823
Bme1390I	CCNGG	5 cut(s)	262, 310, 353, 1145, 1170
Bme18I	GGWCC	2 cut(s)	202, 986
BmgT120I	GGNCC	3 cut(s)	202, 986, 1141
BmiI	GGNNCC	6 cut(s)	48, 203, 321, 502, 1142, 1163
BmrFI	CCNGG	5 cut(s)	262, 310, 353, 1145, 1170
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	2 cut(s)	1081, 1114
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	2 cut(s)	857, 1032
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	594, 1095
BsaJI	CCNNGG	2 cut(s)	341, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 706
Bse1I	ACTGG	4 cut(s)	700, 792, 908, 1163
Bse3DI	GCAATG	1 cut(s)	1031
Bse8I	GATNNNNATC	2 cut(s)	594, 1095
BseBI	CCWGG	4 cut(s)	262, 310, 1145, 1170
BseDI	CCNNGG	2 cut(s)	341, 881
BseGI	GGATG	3 cut(s)	137, 1096, 1129
BseJI	GATNNNNATC	2 cut(s)	594, 1095
BseLI	CCNNNNNNNGG	2 cut(s)	315, 706
BseMI	GCAATG	1 cut(s)	1031
BseMII	CTCAG	1 cut(s)	1064
BseNI	ACTGG	4 cut(s)	700, 792, 908, 1163
BseRI	GAGGAG	5 cut(s)	92, 106, 113, 726, 959
BseXI	GCAGC	2 cut(s)	227, 583
BseYI	CCCAGC	2 cut(s)	974, 1228
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	195, 699, 821, 1143
BshNI	GGYRCC	2 cut(s)	500, 1161
BsiEI	CGRYCG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	299, 1128
BslI	CCNNNNNNNGG	2 cut(s)	315, 706
BsmAI	GTCTC	1 cut(s)	1022
BsmBI	CGTCTC	1 cut(s)	1022
BsmFI	GGGAC	2 cut(s)	299, 1128
BsnI	GGCC	4 cut(s)	195, 699, 821, 1143
Bsp143I	GATC	4 cut(s)	345, 595, 970, 1209
BspACI	CCGC	6 cut(s)	146, 217, 455, 755, 776, 822
BspANI	GGCC	4 cut(s)	195, 699, 821, 1143
BspCNI	CTCAG	1 cut(s)	1065
BspLI	GGNNCC	6 cut(s)	48, 203, 321, 502, 1142, 1163
BspPI	GGATC	3 cut(s)	353, 965, 1204
BspT107I	GGYRCC	2 cut(s)	500, 1161
BsrDI	GCAATG	1 cut(s)	1031
BsrI	ACTGG	4 cut(s)	700, 792, 908, 1163
BssECI	CCNNGG	2 cut(s)	341, 881
BssMI	GATC	4 cut(s)	345, 595, 970, 1209
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	4 cut(s)	262, 310, 1145, 1170
Bst4CI	ACNGT	2 cut(s)	60, 529
Bst6I	CTCTTC	2 cut(s)	74, 473
BstC8I	GCNNGC	2 cut(s)	585, 1154
BstDEI	CTNAG	3 cut(s)	446, 468, 1073
BstF5I	GGATG	3 cut(s)	137, 1096, 1129
BstKTI	GATC	4 cut(s)	348, 598, 973, 1212
BstMAI	GTCTC	1 cut(s)	1022
BstMBI	GATC	4 cut(s)	345, 595, 970, 1209
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	580, 1100, 1149
BstNI	CCWGG	4 cut(s)	262, 310, 1145, 1170
BstNSI	RCATGY	2 cut(s)	587, 1156
BstSCI	CCNGG	5 cut(s)	260, 308, 351, 1143, 1168
BstV1I	GCAGC	2 cut(s)	227, 583
BstV2I	GAAGAC	2 cut(s)	857, 1032
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1185
BsuRI	GGCC	4 cut(s)	195, 699, 821, 1143
BtsCI	GGATG	3 cut(s)	137, 1096, 1129
BtsIMutI	CAGTG	2 cut(s)	693, 1156
Cac8I	GCNNGC	2 cut(s)	585, 1154
Cfr13I	GGNCC	3 cut(s)	202, 986, 1141
CseI	GACGC	2 cut(s)	322, 1037
CsiI	ACCWGGT	1 cut(s)	1168
Csp6I	GTAC	3 cut(s)	229, 443, 1175
CviAII	CATG	6 cut(s)	226, 292, 584, 893, 1153, 1185
CviQI	GTAC	3 cut(s)	229, 443, 1175
DdeI	CTNAG	3 cut(s)	446, 468, 1073
DpnI	GATC	4 cut(s)	347, 597, 972, 1211
DpnII	GATC	4 cut(s)	345, 595, 970, 1209
DraI	TTTAAA	1 cut(s)	799
EaeI	YGGCCR	3 cut(s)	193, 697, 819
Eam1104I	CTCTTC	2 cut(s)	74, 473
EarI	CTCTTC	2 cut(s)	74, 473
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	881
Eco47I	GGWCC	2 cut(s)	202, 986
Eco57I	CTGAAG	3 cut(s)	256, 627, 869
EcoRII	CCWGG	4 cut(s)	260, 308, 1143, 1168
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	6 cut(s)	229, 295, 587, 896, 1156, 1188
FaqI	GGGAC	2 cut(s)	299, 1128
FatI	CATG	6 cut(s)	225, 291, 583, 892, 1152, 1184
FauI	CCCGC	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	241, 572, 822
FokI	GGATG	3 cut(s)	124, 1083, 1136
Fsp4HI	GCNGC	3 cut(s)	241, 572, 822
GluI	GCNGC	3 cut(s)	241, 572, 822
GsaI	CCCAGC	2 cut(s)	978, 1232
HaeIII	GGCC	4 cut(s)	195, 699, 821, 1143
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	2 cut(s)	322, 1037
Hin1II	CATG	6 cut(s)	229, 295, 587, 896, 1156, 1188
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HinfI	GANTC	5 cut(s)	404, 606, 907, 1012, 1066
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	8 cut(s)	54, 135, 413, 605, 677, 770, 870, 911
Hpy166II	GTNNAC	4 cut(s)	761, 872, 1175, 1192
Hpy188I	TCNGA	8 cut(s)	51, 345, 372, 646, 849, 1074, 1085, 1204
Hpy188III	TCNNGA	3 cut(s)	274, 326, 599
Hpy8I	GTNNAC	4 cut(s)	761, 872, 1175, 1192
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	107, 139, 651, 1114
HpyCH4III	ACNGT	2 cut(s)	60, 529
HpyCH4V	TGCA	5 cut(s)	180, 587, 1036, 1152, 1156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	580, 1100, 1149
HpyF3I	CTNAG	3 cut(s)	446, 468, 1073
Hsp92II	CATG	6 cut(s)	229, 295, 587, 896, 1156, 1188
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	345, 595, 970, 1209
LmnI	GCTCC	3 cut(s)	52, 946, 1225
Lsp1109I	GCAGC	2 cut(s)	227, 583
LweI	GCATC	2 cut(s)	1081, 1114
MabI	ACCWGGT	1 cut(s)	1168
MaeIII	GTNAC	4 cut(s)	60, 401, 523, 899
MalI	GATC	4 cut(s)	347, 597, 972, 1211
MboI	GATC	4 cut(s)	345, 595, 970, 1209
MboII	GAAGA	6 cut(s)	61, 178, 490, 862, 1010, 1037
MfeI	CAATTG	1 cut(s)	1052
MlsI	TGGCCA	2 cut(s)	195, 699
MluCI	AATT	7 cut(s)	181, 304, 418, 719, 840, 1052, 1104
MluNI	TGGCCA	2 cut(s)	195, 699
MlyI	GAGTC	3 cut(s)	398, 600, 1060
Mox20I	TGGCCA	2 cut(s)	195, 699
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	2 cut(s)	195, 699
MseI	TTAA	3 cut(s)	798, 930, 1059
MslI	CAYNNNNRTG	4 cut(s)	588, 891, 897, 1074
Msp20I	TGGCCA	2 cut(s)	195, 699
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	5 cut(s)	262, 310, 353, 1145, 1170
MunI	CAATTG	1 cut(s)	1052
MvaI	CCWGG	4 cut(s)	262, 310, 1145, 1170
MwoI	GCNNNNNNNGC	3 cut(s)	580, 1100, 1149
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	4 cut(s)	345, 595, 970, 1209
NlaIII	CATG	6 cut(s)	229, 295, 587, 896, 1156, 1188
NlaIV	GGNNCC	6 cut(s)	48, 203, 321, 502, 1142, 1163
NmuCI	GTSAC	3 cut(s)	60, 401, 899
NspI	RCATGY	2 cut(s)	587, 1156
PaeI	GCATGC	2 cut(s)	587, 1156
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	907, 1012
PfoI	TCCNGGA	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	242, 573, 823
PleI	GAGTC	3 cut(s)	398, 600, 1060
PpsI	GAGTC	3 cut(s)	398, 600, 1060
Psp6I	CCWGG	4 cut(s)	260, 308, 1143, 1168
PspFI	CCCAGC	2 cut(s)	974, 1228
PspGI	CCWGG	4 cut(s)	260, 308, 1143, 1168
PspN4I	GGNNCC	6 cut(s)	48, 203, 321, 502, 1142, 1163
PspPI	GGNCC	3 cut(s)	202, 986, 1141
RsaI	GTAC	3 cut(s)	230, 444, 1176
RsaNI	GTAC	3 cut(s)	229, 443, 1175
RseI	CAYNNNNRTG	4 cut(s)	588, 891, 897, 1074
SaqAI	TTAA	3 cut(s)	798, 930, 1059
SatI	GCNGC	3 cut(s)	241, 572, 822
Sau3AI	GATC	4 cut(s)	345, 595, 970, 1209
Sau96I	GGNCC	3 cut(s)	202, 986, 1141
SchI	GAGTC	3 cut(s)	398, 600, 1060
ScrFI	CCNGG	5 cut(s)	262, 310, 353, 1145, 1170
SetI	ASST	9 cut(s)	57, 242, 502, 547, 766, 957, 1171, 1209, 1230
SexAI	ACCWGGT	1 cut(s)	1168
SfaNI	GCATC	2 cut(s)	1081, 1114
SinI	GGWCC	2 cut(s)	202, 986
SmiMI	CAYNNNNRTG	4 cut(s)	588, 891, 897, 1074
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
SphI	GCATGC	2 cut(s)	587, 1156
Sse9I	AATT	7 cut(s)	181, 304, 418, 719, 840, 1052, 1104
SsiI	CCGC	6 cut(s)	146, 217, 455, 755, 776, 822
StyD4I	CCNGG	5 cut(s)	260, 308, 351, 1143, 1168
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	2 cut(s)	60, 529
TaqI	TCGA	3 cut(s)	348, 541, 622
TasI	AATT	7 cut(s)	181, 304, 418, 719, 840, 1052, 1104
TauI	GCSGC	1 cut(s)	824
TfiI	GAWTC	2 cut(s)	907, 1012
Tru1I	TTAA	3 cut(s)	798, 930, 1059
Tru9I	TTAA	3 cut(s)	798, 930, 1059
TscAI	CASTG	2 cut(s)	700, 1163
TseFI	GTSAC	3 cut(s)	60, 401, 899
TseI	GCWGC	2 cut(s)	240, 571
Tsp45I	GTSAC	3 cut(s)	60, 401, 899
TspDTI	ATGAA	2 cut(s)	17, 881
TspGWI	ACGGA	1 cut(s)	1202
TspRI	CASTG	2 cut(s)	700, 1163
VpaK11BI	GGWCC	2 cut(s)	202, 986
XapI	RAATTY	3 cut(s)	418, 719, 840
XceI	RCATGY	2 cut(s)	587, 1156
XmnI	GAANNNNTTC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.