Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

28472382 .. 28476207

Gene Structure 3826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAACCAAATAACAGAAAGAAACACGACTTTGGTGACGACAATGGCTCCGAAGCTACTGTCACCCCTCTTCCAATGGCTCATTCTCCTAACCCTCCTTCTCCTCTTTCTCTACTCCTCACTCCTCTCCTTCCACACATCCTCACCGCAACCCAAAACAATCCCCACTTTACCCTCCTGCAATTTCTTCAATGGCCATTGGATCCAAGACCCCGACCGCAGACCCATGTACGACGAGAGCTGCCCATTTCACAGGAACGCCTGGAACTGCTTCAGGAACAGGAGGGACAACATGGGTGTCATCAATTCCTGGAAATGGGTTCCTCGTGATTGCGTCTTGCCTCGGATCGACCCGGTTCGGTTTCTGGGTCTGATGAGGAACAGGAACATTGGGTTTGTTGGTGACTCTTTGAATGAGAATTTTCTGGTGTCGTTTTTGTGCGTACTTAGGGTGGCGGATTGGGGGGCTAAGAAGTGGAAGAGGAAAGGGGCTTGGAGAGGTGCCTATTTTCCCAAGTTCAATGTTACGGTGGGGTATCATCGAGCTGTGTTGCTCTCCAAATATGAGTGGCAGCCAAAACAGCATGCAGATGGTGATCAAGATGGACTCAAAGGAATATATCGAGTAGATGTTGATATTCCTTCTGATGATTGGGCAAACATTGGTGATTTCTATGATGTCCTTGTTTTCAACACTGGCCATTGGTGGGGCTTTGATAAATTCCCAAAAGAAACTCCTCTCACTTTCTATCGAGCGGGTGAACCAATATATCCTCCGCTTGATATATTGGGTGGATTTAAAGTTGTTGTCGAGAATATGGCCTCATACATACAAAACAAAATTCCTCTGAAGACATTGAAGTTATGGCGTTTACAATCACCAAGGCATTTTCATGGGGGCGACTGGAATCAAAATGGCAGTTGCTTGTTTAATAAACCCCTTGAGGAGCACCAGCAACAATGGACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

323

Amino Acids

37.81

Weight (kDa)

9.31

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	59 - 111	6.1e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 320	6.4e-44	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	755
AciI	CCGC	5 cut(s)	146, 217, 455, 755, 776
AclWI	GGATC	3 cut(s)	196, 209, 353
AcoI	YGGCCR	2 cut(s)	193, 697
AcsI	RAATTY	3 cut(s)	418, 719, 840
AcuI	CTGAAG	2 cut(s)	256, 869
AfaI	GTAC	2 cut(s)	230, 444
AfiI	CCNNNNNNNGG	2 cut(s)	315, 706
AgsI	TTSAA	5 cut(s)	190, 412, 520, 691, 859
AjnI	CCWGG	2 cut(s)	260, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	3 cut(s)	55, 240, 545
AluI	AGCT	3 cut(s)	55, 240, 545
Alw21I	GWGCWC	1 cut(s)	951
AlwI	GGATC	3 cut(s)	196, 209, 353
AoxI	GGCC	3 cut(s)	193, 697, 819
ApeKI	GCWGC	2 cut(s)	240, 571
ApoI	RAATTY	3 cut(s)	418, 719, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	963
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	8 cut(s)	46, 54, 135, 413, 605, 677, 770, 870
AvaII	GGWCC	1 cut(s)	963
BalI	TGGCCA	2 cut(s)	195, 699
BamHI	GGATCC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	2 cut(s)	227, 583
BccI	CCATC	2 cut(s)	584, 596
BciT130I	CCWGG	2 cut(s)	262, 310
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	241, 572
BlsI	GCNGC	2 cut(s)	242, 573
Bme1390I	CCNGG	3 cut(s)	262, 310, 353
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	963
BmiI	GGNNCC	4 cut(s)	48, 203, 321, 502
BmrFI	CCNGG	3 cut(s)	262, 310, 353
BpiI	GAAGAC	1 cut(s)	857
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	341, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 706
Bse1I	ACTGG	2 cut(s)	700, 908
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	262, 310
BseDI	CCNNGG	2 cut(s)	341, 881
BseGI	GGATG	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	315, 706
BseNI	ACTGG	2 cut(s)	700, 908
BseRI	GAGGAG	5 cut(s)	92, 106, 113, 726, 959
BseXI	GCAGC	2 cut(s)	227, 583
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	195, 699, 821
BshNI	GGYRCC	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	315, 706
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	195, 699, 821
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	3 cut(s)	201, 345, 595
BspACI	CCGC	5 cut(s)	146, 217, 455, 755, 776
BspANI	GGCC	3 cut(s)	195, 699, 821
BspLI	GGNNCC	4 cut(s)	48, 203, 321, 502
BspPI	GGATC	3 cut(s)	196, 209, 353
BspT107I	GGYRCC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	700, 908
BssECI	CCNNGG	2 cut(s)	341, 881
BssMI	GATC	3 cut(s)	201, 345, 595
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	262, 310
Bst4CI	ACNGT	2 cut(s)	60, 529
Bst6I	CTCTTC	2 cut(s)	74, 473
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	446, 468
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	3 cut(s)	204, 348, 598
BstMBI	GATC	3 cut(s)	201, 345, 595
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	2 cut(s)	262, 310
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	260, 308, 351
BstV1I	GCAGC	2 cut(s)	227, 583
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	195, 699, 821
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	963
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	229, 443
CviAII	CATG	4 cut(s)	226, 292, 584, 893
CviQI	GTAC	2 cut(s)	229, 443
DdeI	CTNAG	2 cut(s)	446, 468
DpnI	GATC	3 cut(s)	203, 347, 597
DpnII	GATC	3 cut(s)	201, 345, 595
DraI	TTTAAA	1 cut(s)	799
EaeI	YGGCCR	2 cut(s)	193, 697
Eam1104I	CTCTTC	2 cut(s)	74, 473
EarI	CTCTTC	2 cut(s)	74, 473
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	881
Eco47I	GGWCC	1 cut(s)	963
Eco57I	CTGAAG	2 cut(s)	256, 869
EcoRII	CCWGG	2 cut(s)	260, 308
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	4 cut(s)	229, 295, 587, 896
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	225, 291, 583, 892
FauI	CCCGC	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	241, 572
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	241, 572
GluI	GCNGC	2 cut(s)	241, 572
HaeIII	GGCC	3 cut(s)	195, 699, 821
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	4 cut(s)	229, 295, 587, 896
HinfI	GANTC	3 cut(s)	404, 606, 907
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	8 cut(s)	46, 54, 135, 413, 605, 677, 770, 870
Hpy166II	GTNNAC	2 cut(s)	761, 872
Hpy188I	TCNGA	5 cut(s)	51, 345, 372, 646, 849
Hpy188III	TCNNGA	4 cut(s)	274, 326, 599, 811
Hpy8I	GTNNAC	2 cut(s)	761, 872
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	107, 139, 651
HpyCH4III	ACNGT	2 cut(s)	60, 529
HpyCH4V	TGCA	2 cut(s)	180, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	2 cut(s)	446, 468
Hsp92II	CATG	4 cut(s)	229, 295, 587, 896
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	201, 345, 595
LmnI	GCTCC	2 cut(s)	52, 946
Lsp1109I	GCAGC	2 cut(s)	227, 583
MaeIII	GTNAC	4 cut(s)	34, 60, 401, 523
MalI	GATC	3 cut(s)	203, 347, 597
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	3 cut(s)	201, 345, 595
MboII	GAAGA	4 cut(s)	61, 178, 490, 862
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	951
MlsI	TGGCCA	2 cut(s)	195, 699
MluCI	AATT	5 cut(s)	181, 304, 418, 719, 840
MluNI	TGGCCA	2 cut(s)	195, 699
MlyI	GAGTC	2 cut(s)	398, 600
Mox20I	TGGCCA	2 cut(s)	195, 699
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	2 cut(s)	195, 699
MseI	TTAA	2 cut(s)	798, 930
MslI	CAYNNNNRTG	2 cut(s)	588, 891
Msp20I	TGGCCA	2 cut(s)	195, 699
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	262, 310, 353
MvaI	CCWGG	2 cut(s)	262, 310
MwoI	GCNNNNNNNGC	1 cut(s)	580
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	201, 345, 595
NlaIII	CATG	4 cut(s)	229, 295, 587, 896
NlaIV	GGNNCC	4 cut(s)	48, 203, 321, 502
NmuCI	GTSAC	3 cut(s)	34, 60, 401
NspI	RCATGY	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	907
PfoI	TCCNGGA	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	242, 573
PleI	GAGTC	2 cut(s)	398, 600
PpsI	GAGTC	2 cut(s)	398, 600
Psp6I	CCWGG	2 cut(s)	260, 308
PspGI	CCWGG	2 cut(s)	260, 308
PspN4I	GGNNCC	4 cut(s)	48, 203, 321, 502
PspPI	GGNCC	1 cut(s)	963
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	2 cut(s)	230, 444
RsaNI	GTAC	2 cut(s)	229, 443
RseI	CAYNNNNRTG	2 cut(s)	588, 891
SaqAI	TTAA	2 cut(s)	798, 930
SatI	GCNGC	2 cut(s)	241, 572
Sau3AI	GATC	3 cut(s)	201, 345, 595
Sau96I	GGNCC	1 cut(s)	963
SchI	GAGTC	2 cut(s)	398, 600
ScrFI	CCNGG	3 cut(s)	262, 310, 353
SduI	GDGCHC	1 cut(s)	951
SetI	ASST	4 cut(s)	57, 242, 502, 547
SinI	GGWCC	1 cut(s)	963
SmiMI	CAYNNNNRTG	2 cut(s)	588, 891
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	5 cut(s)	181, 304, 418, 719, 840
SsiI	CCGC	5 cut(s)	146, 217, 455, 755, 776
StyD4I	CCNGG	3 cut(s)	260, 308, 351
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	2 cut(s)	60, 529
TaqI	TCGA	5 cut(s)	348, 541, 622, 751, 810
TasI	AATT	5 cut(s)	181, 304, 418, 719, 840
TfiI	GAWTC	1 cut(s)	907
Tru1I	TTAA	2 cut(s)	798, 930
Tru9I	TTAA	2 cut(s)	798, 930
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	3 cut(s)	34, 60, 401
TseI	GCWGC	2 cut(s)	240, 571
Tsp45I	GTSAC	3 cut(s)	34, 60, 401
TspDTI	ATGAA	2 cut(s)	17, 881
TspRI	CASTG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	963
XapI	RAATTY	3 cut(s)	418, 719, 840
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.