Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

26537234 .. 26540950

Gene Structure 3717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTCCGAAGCTACTGTCACCCCTCTTCCAATGGCTCATTCTCCTAACCCTCCTTCTCCTCTTTCTCTACTCCTCACTCCTCTCCTTCCACACATCCTCACCGCAACCCAAACCAATCCCCACTTTACCCTCCTGCAATTTCTTCAATGGCCATTGGGTCCAAGACCCCGACCGCAGACCCATGTACGACGAGAGCTGCCCATTTCACAGGAACGCGTGGAACTGCTTGAGGAACAAGAGGGACAACATGGGTGTCATCAATTCTTGGAAATGGGTTCCTCGTGATTGCGTCTTGCCTCGGATCGACCCGGTTCGGTTTCTGGGTCTGATGAGGAACAGGAACATTGGGTTTGTTGGTGACTCTTTGAATGAGAATTTTCTGGTGTCGTTTTTGTGCGTACTTAGGGTGGCGGATTTGGGGGCTAAGAAGTGGAAGAGGAAAGGGGCTTGGAGAGGTGTCTATTTTCCCAAGTTCAATGTTACGGTGGGGTATCATCGAGCTGTGTTGCTCTCCAAATATGAGTGGCAGCCAAAACAGCATGCAGATGGTGATCAAGATGGACTCAAAGGAATTTATCGAGTAGATGTTGATATTCCTTCTGATGATTGGGCAAACATTGGTGATTTCTATGATGTCCTTGTTTTCAACACTGGCCATTGGTGGGGCTTTGATAAATTCCCAAAAGAAACTCCTCTCACTTTCTATCGTGCGGGTGAACCAATATATCCTCCGCTTGATATATTGGGTGGATTTAAAGTTGTTGTCGAGAATATGGCCTCATACATACAAAACAAAATTCCTCTGAAGACATTGAAGTTATGGCGTTTACAATCACCAAGGCATTTTCATGGGGGTGACTGGAATCAAAATGGCAGTTGCTTGTTTAATAAACCCCTTGAGGAGCACCAGCTTGACTTGTGGTTTGATCCCAGCAACAATGGACCAAATAAAGAAGAAAGACTGCTGAATCGTCTCATAGAAGATGCATTGCAAGGAACTGATATTCAATTGCTTAACTTGACTCATCTGAGTGAGTTCAGAGCAGATGCCCATCCAGCAATTTGGTTGGGACAGAAGGATGCCGTCAAAGTCTGGGGCCAGGACTGCATGCACTGGTGCCTACCTGGTGTACCAGATACATGGGTTGACATTTTATCAGAGCTGATCCGTATTGGTTTGGAGCTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

397

Amino Acids

45.98

Weight (kDa)

7.63

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	45 - 97	1.9e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	99 - 388	2.2e-70	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1119
AccII	CGCG	1 cut(s)	218
AciI	CCGC	5 cut(s)	104, 175, 413, 713, 734
AclWI	GGATC	3 cut(s)	311, 923, 1162
AcoI	YGGCCR	2 cut(s)	151, 655
AcsI	RAATTY	4 cut(s)	376, 573, 677, 798
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	3 cut(s)	188, 402, 1134
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	6 cut(s)	148, 370, 478, 649, 817, 1010
AjnI	CCWGG	2 cut(s)	1101, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	6 cut(s)	13, 198, 503, 913, 1165, 1186
AluI	AGCT	6 cut(s)	13, 198, 503, 913, 1165, 1186
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	3 cut(s)	311, 923, 1162
AoxI	GGCC	4 cut(s)	151, 655, 777, 1099
ApeKI	GCWGC	2 cut(s)	198, 529
ApoI	RAATTY	4 cut(s)	376, 573, 677, 798
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 908, 940
AspS9I	GGNCC	3 cut(s)	160, 944, 1099
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
AvaII	GGWCC	2 cut(s)	160, 944
BaeI	ACNNNNGTAYC	2 cut(s)	1131, 1164
BalI	TGGCCA	2 cut(s)	153, 657
BanI	GGYRCC	1 cut(s)	1119
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	2 cut(s)	185, 541
BccI	CCATC	3 cut(s)	542, 554, 1062
BceAI	ACGGC	1 cut(s)	1070
BciT130I	CCWGG	2 cut(s)	1103, 1128
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	980
BisI	GCNGC	2 cut(s)	199, 530
BlsI	GCNGC	2 cut(s)	200, 531
Bme1390I	CCNGG	3 cut(s)	311, 1103, 1128
Bme18I	GGWCC	2 cut(s)	160, 944
BmgT120I	GGNCC	3 cut(s)	160, 944, 1099
BmiI	GGNNCC	5 cut(s)	6, 161, 279, 1100, 1121
BmrFI	CCNGG	3 cut(s)	311, 1103, 1128
BmsI	GCATC	3 cut(s)	976, 1039, 1072
BpiI	GAAGAC	1 cut(s)	815
BpuEI	CTTGAG	2 cut(s)	250, 920
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	552, 1053
BsaJI	CCNNGG	2 cut(s)	299, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	3 cut(s)	658, 866, 1121
Bse3DI	GCAATG	1 cut(s)	989
Bse8I	GATNNNNATC	2 cut(s)	552, 1053
BseBI	CCWGG	2 cut(s)	1103, 1128
BseDI	CCNNGG	2 cut(s)	299, 839
BseGI	GGATG	3 cut(s)	95, 1054, 1087
BseJI	GATNNNNATC	2 cut(s)	552, 1053
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMI	GCAATG	1 cut(s)	989
BseMII	CTCAG	1 cut(s)	1022
BseNI	ACTGG	3 cut(s)	658, 866, 1121
BseRI	GAGGAG	5 cut(s)	50, 64, 71, 684, 917
BseXI	GCAGC	2 cut(s)	185, 541
BseYI	CCCAGC	2 cut(s)	932, 1186
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	4 cut(s)	153, 657, 779, 1101
BshNI	GGYRCC	1 cut(s)	1119
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	257, 1086
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	980
BsmBI	CGTCTC	1 cut(s)	980
BsmFI	GGGAC	2 cut(s)	257, 1086
BsnI	GGCC	4 cut(s)	153, 657, 779, 1101
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp143I	GATC	4 cut(s)	303, 553, 928, 1167
BspACI	CCGC	5 cut(s)	104, 175, 413, 713, 734
BspANI	GGCC	4 cut(s)	153, 657, 779, 1101
BspCNI	CTCAG	1 cut(s)	1023
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	5 cut(s)	6, 161, 279, 1100, 1121
BspPI	GGATC	3 cut(s)	311, 923, 1162
BspT107I	GGYRCC	1 cut(s)	1119
BsrDI	GCAATG	1 cut(s)	989
BsrI	ACTGG	3 cut(s)	658, 866, 1121
BssECI	CCNNGG	2 cut(s)	299, 839
BssMI	GATC	4 cut(s)	303, 553, 928, 1167
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	839
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	1103, 1128
Bst4CI	ACNGT	2 cut(s)	18, 487
Bst6I	CTCTTC	2 cut(s)	32, 431
BstC8I	GCNNGC	2 cut(s)	543, 1112
BstDEI	CTNAG	3 cut(s)	404, 426, 1031
BstF5I	GGATG	3 cut(s)	95, 1054, 1087
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	4 cut(s)	306, 556, 931, 1170
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	4 cut(s)	303, 553, 928, 1167
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
BstNI	CCWGG	2 cut(s)	1103, 1128
BstNSI	RCATGY	2 cut(s)	545, 1114
BstSCI	CCNGG	3 cut(s)	309, 1101, 1126
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	185, 541
BstV2I	GAAGAC	1 cut(s)	815
BstXI	CCANNNNNNTGG	2 cut(s)	1065, 1143
BsuRI	GGCC	4 cut(s)	153, 657, 779, 1101
BtsCI	GGATG	3 cut(s)	95, 1054, 1087
BtsIMutI	CAGTG	2 cut(s)	651, 1114
Cac8I	GCNNGC	2 cut(s)	543, 1112
Cfr13I	GGNCC	3 cut(s)	160, 944, 1099
CseI	GACGC	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	1126
Csp6I	GTAC	3 cut(s)	187, 401, 1133
CviAII	CATG	6 cut(s)	184, 250, 542, 851, 1111, 1143
CviQI	GTAC	3 cut(s)	187, 401, 1133
DdeI	CTNAG	3 cut(s)	404, 426, 1031
DpnI	GATC	4 cut(s)	305, 555, 930, 1169
DpnII	GATC	4 cut(s)	303, 553, 928, 1167
DraI	TTTAAA	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	151, 655
Eam1104I	CTCTTC	2 cut(s)	32, 431
EarI	CTCTTC	2 cut(s)	32, 431
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	839
Eco47I	GGWCC	2 cut(s)	160, 944
Eco57I	CTGAAG	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	1101, 1126
EcoT14I	CCWWGG	1 cut(s)	839
EcoT22I	ATGCAT	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	980
FaeI	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
FaqI	GGGAC	2 cut(s)	257, 1086
FatI	CATG	6 cut(s)	183, 249, 541, 850, 1110, 1142
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	199, 530
FokI	GGATG	3 cut(s)	82, 1041, 1094
Fsp4HI	GCNGC	2 cut(s)	199, 530
GluI	GCNGC	2 cut(s)	199, 530
GsaI	CCCAGC	2 cut(s)	936, 1190
HaeIII	GGCC	4 cut(s)	153, 657, 779, 1101
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
HincII	GTYRAC	1 cut(s)	1150
HindII	GTYRAC	1 cut(s)	1150
HinfI	GANTC	5 cut(s)	362, 564, 865, 970, 1024
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
Hpy166II	GTNNAC	4 cut(s)	719, 830, 1133, 1150
Hpy188I	TCNGA	8 cut(s)	9, 303, 330, 604, 807, 1032, 1043, 1162
Hpy188III	TCNNGA	3 cut(s)	284, 557, 769
Hpy8I	GTNNAC	4 cut(s)	719, 830, 1133, 1150
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	65, 97, 609, 1072
HpyCH4III	ACNGT	2 cut(s)	18, 487
HpyCH4V	TGCA	6 cut(s)	138, 545, 989, 994, 1110, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
HpyF3I	CTNAG	3 cut(s)	404, 426, 1031
Hsp92II	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	303, 553, 928, 1167
LmnI	GCTCC	3 cut(s)	10, 904, 1183
Lsp1109I	GCAGC	2 cut(s)	185, 541
LweI	GCATC	3 cut(s)	976, 1039, 1072
MabI	ACCWGGT	1 cut(s)	1126
MaeIII	GTNAC	4 cut(s)	18, 359, 481, 857
MalI	GATC	4 cut(s)	305, 555, 930, 1169
MboI	GATC	4 cut(s)	303, 553, 928, 1167
MboII	GAAGA	6 cut(s)	19, 136, 448, 820, 968, 995
MfeI	CAATTG	1 cut(s)	1010
MhlI	GDGCHC	1 cut(s)	909
MlsI	TGGCCA	2 cut(s)	153, 657
MluCI	AATT	8 cut(s)	139, 262, 376, 573, 677, 798, 1010, 1062
MluI	ACGCGT	1 cut(s)	216
MluNI	TGGCCA	2 cut(s)	153, 657
MlyI	GAGTC	3 cut(s)	356, 558, 1018
Mox20I	TGGCCA	2 cut(s)	153, 657
Mph1103I	ATGCAT	1 cut(s)	991
MscI	TGGCCA	2 cut(s)	153, 657
MseI	TTAA	3 cut(s)	756, 888, 1017
MslI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
Msp20I	TGGCCA	2 cut(s)	153, 657
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	311, 1103, 1128
MunI	CAATTG	1 cut(s)	1010
MvaI	CCWGG	2 cut(s)	1103, 1128
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	4 cut(s)	303, 553, 928, 1167
NlaIII	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
NlaIV	GGNNCC	5 cut(s)	6, 161, 279, 1100, 1121
NmuCI	GTSAC	3 cut(s)	18, 359, 857
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	2 cut(s)	545, 1114
PaeI	GCATGC	2 cut(s)	545, 1114
PfeI	GAWTC	2 cut(s)	865, 970
PkrI	GCNGC	2 cut(s)	200, 531
PleI	GAGTC	3 cut(s)	356, 558, 1018
PpsI	GAGTC	3 cut(s)	356, 558, 1018
Psp6I	CCWGG	2 cut(s)	1101, 1126
PspFI	CCCAGC	2 cut(s)	932, 1186
PspGI	CCWGG	2 cut(s)	1101, 1126
PspN4I	GGNNCC	5 cut(s)	6, 161, 279, 1100, 1121
PspPI	GGNCC	3 cut(s)	160, 944, 1099
RsaI	GTAC	3 cut(s)	188, 402, 1134
RsaNI	GTAC	3 cut(s)	187, 401, 1133
RseI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
SaqAI	TTAA	3 cut(s)	756, 888, 1017
SatI	GCNGC	2 cut(s)	199, 530
Sau3AI	GATC	4 cut(s)	303, 553, 928, 1167
Sau96I	GGNCC	3 cut(s)	160, 944, 1099
SchI	GAGTC	3 cut(s)	356, 558, 1018
ScrFI	CCNGG	3 cut(s)	311, 1103, 1128
SduI	GDGCHC	1 cut(s)	909
SetI	ASST	8 cut(s)	15, 200, 460, 505, 915, 1129, 1167, 1188
SexAI	ACCWGGT	1 cut(s)	1126
SfaNI	GCATC	3 cut(s)	976, 1039, 1072
SinI	GGWCC	2 cut(s)	160, 944
SmiMI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
SmlI	CTYRAG	2 cut(s)	229, 899
SmoI	CTYRAG	2 cut(s)	229, 899
SphI	GCATGC	2 cut(s)	545, 1114
Sse9I	AATT	8 cut(s)	139, 262, 376, 573, 677, 798, 1010, 1062
SsiI	CCGC	5 cut(s)	104, 175, 413, 713, 734
StyD4I	CCNGG	3 cut(s)	309, 1101, 1126
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	18, 487
TaqI	TCGA	4 cut(s)	306, 499, 580, 768
TasI	AATT	8 cut(s)	139, 262, 376, 573, 677, 798, 1010, 1062
TfiI	GAWTC	2 cut(s)	865, 970
Tru1I	TTAA	3 cut(s)	756, 888, 1017
Tru9I	TTAA	3 cut(s)	756, 888, 1017
TscAI	CASTG	2 cut(s)	658, 1121
TseFI	GTSAC	3 cut(s)	18, 359, 857
TseI	GCWGC	2 cut(s)	198, 529
Tsp45I	GTSAC	3 cut(s)	18, 359, 857
TspDTI	ATGAA	1 cut(s)	839
TspGWI	ACGGA	1 cut(s)	1160
TspRI	CASTG	2 cut(s)	658, 1121
VpaK11BI	GGWCC	2 cut(s)	160, 944
XapI	RAATTY	4 cut(s)	376, 573, 677, 798
XceI	RCATGY	2 cut(s)	545, 1114
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.