Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Forward (+)

7835178 .. 7838490

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1057700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCTTCTAACAATGGCACCCAAGCTTCTCTCTCCCCTCTTCCCATGGCTTATTCTACTGACCCTCTTCCTCCTCTTCCTCTACTCCTCACTCCTCCCCTTCCACCCACCCTCTCCACCAACCCCTCCATCCAACAAGTTCCCCACTTTACCCTCCTGCAATTTCTTCAAAGGCCATTGGGTCCAAGACCCCAACCGCAAACCCATGTACGATGAGACCTGCCCATTTCACAGAAACTCCTGGAACTGCCTCAGGAACAAGAGGGACAACATGGGAATCATCAATTCTTGGAAATGGGTCCCTCAAGGTTGCGTCTTGCATCGGATCGACCAGGCACGGTTTCTGGGTCGGATGAGGAACAGGAATATTGGGTTCGTCGGCGACTCGCTGAATGAGAATTTTTTGGTGTCGTTTTTGTGCATTCTCAGAGTGGCGGATGCGGGTGCTAAGAAGTGGAAGAGGAAGGGGGCTTGGAGAGGAGCTTATTTTCCTAAGTTCAACGTTACGGTGGGGTATCATCGGGCAGTGTTGCTCGCTAAATATGAGTGGCAACCAAAACAGACTGCGGGTGGGGATGAAGATGGATTGAAGGGAACGTATCGAGTAGATGTTGATATTCCTGCCAATGATTGGGCCAACATTGCTGATTTTTATGATGTCCTAGTTTTCAATACAGGGCACTGGTGGAATTCTGATAAATTTCCAAAAGCGACTCCTCTCACTTTTTATCGTGCGGGCGAACCAATACTACCTCCCCTTGATATATTAGATGGATTTAAAGTTGTTCTTGAGAATATGGTACCATACATACAAAACAAAGTTCCTCACAAGACACTCAAGATATGGCGTTTACAATCGCCAAGGCATTTTTATGGAGGTGATTGGAATCAGAACGGCAGTTGCTTGTTCAATAAGCCCCTTGAGGAGCAGCAGCTTGACTTGTGGTTTGATCCCAGCAACAATGGACCGAACAAAGAAGAAAGACTGCTGAATCGTCTGATTGAAGGCGCATTACAAGGAACCAATATTCAACTGCTTGACCTGACTCAACTGAGTGAATTCAGAGCAGATGCCCATCCAGCGATTTGGTTGGGACAGAAGGATGCCGTTTCAGTCTGGGGCCAGGACTGCATGCACTGGTGCTTACCTGGTGTGCCAGATACGTGGGTTGACATATTATCAGAACTGATCCATGTTGGGTTGGAGTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

405

Amino Acids

46.49

Weight (kDa)

8.52

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	52 - 104	1.1e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	107 - 395	3.8e-71	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
Acc65I	GGTACC	1 cut(s)	799
AccB1I	GGYRCC	2 cut(s)	16, 799
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	5 cut(s)	196, 434, 440, 566, 734
AclI	AACGTT	1 cut(s)	501
AclWI	GGATC	3 cut(s)	332, 944, 1183
AcsI	RAATTY	4 cut(s)	397, 688, 698, 1058
AfaI	GTAC	2 cut(s)	209, 801
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	7 cut(s)	169, 499, 589, 670, 910, 1004, 1031
AjnI	CCWGG	4 cut(s)	239, 330, 1122, 1147
AluBI	AGCT	3 cut(s)	25, 482, 934
AluI	AGCT	3 cut(s)	25, 482, 934
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	332, 944, 1183
AoxI	GGCC	3 cut(s)	172, 633, 1120
ApeKI	GCWGC	2 cut(s)	928, 931
ApoI	RAATTY	4 cut(s)	397, 688, 698, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
Asp718I	GGTACC	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
AsuHPI	GGTGA	1 cut(s)	890
AvaII	GGWCC	3 cut(s)	181, 298, 965
AxyI	CCTNAGG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	681
BaeI	ACNNNNGTAYC	2 cut(s)	1152, 1185
BanI	GGYRCC	2 cut(s)	16, 799
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
BbvI	GCAGC	2 cut(s)	940, 943
BccI	CCATC	4 cut(s)	136, 575, 764, 1083
BceAI	ACGGC	2 cut(s)	910, 1091
BciT130I	CCWGG	4 cut(s)	241, 332, 1124, 1149
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	929, 932
BlsI	GCNGC	2 cut(s)	930, 933
Bme1390I	CCNGG	4 cut(s)	241, 332, 1124, 1149
Bme18I	GGWCC	3 cut(s)	181, 298, 965
BmgT120I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
BmiI	GGNNCC	7 cut(s)	18, 182, 299, 300, 801, 1021, 1121
BmrFI	CCNGG	4 cut(s)	241, 332, 1124, 1149
BmsI	GCATC	4 cut(s)	328, 427, 1060, 1093
BpuEI	CTTGAG	4 cut(s)	288, 809, 821, 941
BsaAI	YACGTR	1 cut(s)	1164
BsaBI	GATNNNNATC	2 cut(s)	885, 1074
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	44, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	686, 1142
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	2 cut(s)	885, 1074
BseBI	CCWGG	4 cut(s)	241, 332, 1124, 1149
BseDI	CCNNGG	2 cut(s)	44, 860
BseGI	GGATG	6 cut(s)	128, 357, 442, 580, 1075, 1108
BseJI	GATNNNNATC	2 cut(s)	885, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	3 cut(s)	265, 439, 1043
BseNI	ACTGG	2 cut(s)	686, 1142
BseRI	GAGGAG	6 cut(s)	62, 76, 83, 492, 705, 938
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	2 cut(s)	940, 943
BseYI	CCCAGC	1 cut(s)	953
BshFI	GGCC	3 cut(s)	174, 635, 1122
BshNI	GGYRCC	2 cut(s)	16, 799
BslFI	GGGAC	3 cut(s)	278, 284, 1107
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	278, 284, 1107
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	3 cut(s)	174, 635, 1122
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	324, 949, 1188
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	5 cut(s)	196, 434, 440, 566, 734
BspANI	GGCC	3 cut(s)	174, 635, 1122
BspCNI	CTCAG	3 cut(s)	264, 438, 1044
BspLI	GGNNCC	7 cut(s)	18, 182, 299, 300, 801, 1021, 1121
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	3 cut(s)	332, 944, 1183
BspT107I	GGYRCC	2 cut(s)	16, 799
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	686, 1142
BssECI	CCNNGG	2 cut(s)	44, 860
BssMI	GATC	3 cut(s)	324, 949, 1188
BssT1I	CCWWGG	2 cut(s)	44, 860
Bst2UI	CCWGG	4 cut(s)	241, 332, 1124, 1149
Bst4CI	ACNGT	2 cut(s)	339, 508
Bst6I	CTCTTC	4 cut(s)	44, 71, 80, 452
BstBAI	YACGTR	1 cut(s)	1164
BstC8I	GCNNGC	3 cut(s)	534, 736, 1133
BstDEI	CTNAG	5 cut(s)	251, 425, 447, 492, 1052
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	6 cut(s)	128, 357, 442, 580, 1075, 1108
BstHHI	GCGC	1 cut(s)	1010
BstKTI	GATC	3 cut(s)	327, 952, 1191
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	324, 949, 1188
BstMWI	GCNNNNNNNGC	3 cut(s)	641, 1079, 1128
BstNI	CCWGG	4 cut(s)	241, 332, 1124, 1149
BstNSI	RCATGY	1 cut(s)	1135
BstSCI	CCNGG	4 cut(s)	239, 330, 1122, 1147
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	2 cut(s)	940, 943
BstXI	CCANNNNNNTGG	2 cut(s)	1086, 1164
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	174, 635, 1122
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	6 cut(s)	128, 357, 442, 580, 1075, 1108
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	531, 679, 1135
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	534, 736, 1133
CfoI	GCGC	1 cut(s)	1010
Cfr13I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	1147
Csp6I	GTAC	2 cut(s)	208, 800
CviAII	CATG	5 cut(s)	45, 205, 271, 1132, 1193
CviJI	RGCY	9 cut(s)	25, 49, 174, 470, 482, 635, 916, 934, 1122
CviKI_1	RGCY	9 cut(s)	25, 49, 174, 470, 482, 635, 916, 934, 1122
CviQI	GTAC	2 cut(s)	208, 800
DdeI	CTNAG	5 cut(s)	251, 425, 447, 492, 1052
DpnI	GATC	3 cut(s)	326, 951, 1190
DpnII	GATC	3 cut(s)	324, 949, 1188
DraI	TTTAAA	1 cut(s)	778
Eam1104I	CTCTTC	4 cut(s)	44, 71, 80, 452
EarI	CTCTTC	4 cut(s)	44, 71, 80, 452
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	44, 860
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	181, 298, 965
Eco81I	CCTNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	2 cut(s)	688, 1058
EcoRII	CCWGG	4 cut(s)	239, 330, 1122, 1147
EcoT14I	CCWWGG	2 cut(s)	44, 860
ErhI	CCWWGG	2 cut(s)	44, 860
FaeI	CATG	5 cut(s)	48, 208, 274, 1135, 1196
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	278, 284, 1107
FatI	CATG	5 cut(s)	44, 204, 270, 1131, 1192
FauI	CCCGC	3 cut(s)	433, 559, 727
Fnu4HI	GCNGC	2 cut(s)	929, 932
FokI	GGATG	6 cut(s)	115, 364, 449, 587, 1062, 1115
Fsp4HI	GCNGC	2 cut(s)	929, 932
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	1009
GluI	GCNGC	2 cut(s)	929, 932
GsaI	CCCAGC	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	174, 635, 1122
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	1010
Hin1II	CATG	5 cut(s)	48, 208, 274, 1135, 1196
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	6 cut(s)	276, 383, 712, 886, 991, 1045
HphI	GGTGA	1 cut(s)	890
Hpy166II	GTNNAC	2 cut(s)	851, 1171
Hpy188I	TCNGA	8 cut(s)	324, 351, 428, 694, 891, 999, 1064, 1183
Hpy188III	TCNNGA	3 cut(s)	253, 788, 838
Hpy8I	GTNNAC	2 cut(s)	851, 1171
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	5 cut(s)	109, 457, 583, 998, 1093
HpyCH4III	ACNGT	2 cut(s)	339, 508
HpyCH4IV	ACGT	3 cut(s)	501, 596, 1163
HpyCH4V	TGCA	5 cut(s)	159, 319, 420, 1131, 1135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	641, 1079, 1128
HpyF3I	CTNAG	5 cut(s)	251, 425, 447, 492, 1052
HpySE526I	ACGT	3 cut(s)	501, 596, 1163
Hsp92II	CATG	5 cut(s)	48, 208, 274, 1135, 1196
HspAI	GCGC	1 cut(s)	1008
KflI	GGGWCCC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	803
Kzo9I	GATC	3 cut(s)	324, 949, 1188
LmnI	GCTCC	2 cut(s)	479, 925
Lsp1109I	GCAGC	2 cut(s)	940, 943
LweI	GCATC	4 cut(s)	328, 427, 1060, 1093
MabI	ACCWGGT	1 cut(s)	1147
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	3 cut(s)	501, 596, 1163
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	326, 951, 1190
MboI	GATC	3 cut(s)	324, 949, 1188
MboII	GAAGA	7 cut(s)	31, 58, 67, 157, 469, 590, 989
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	6 cut(s)	160, 283, 397, 688, 698, 1058
MlyI	GAGTC	3 cut(s)	377, 706, 1039
MmeI	TCCRAC	3 cut(s)	156, 329, 1182
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	870
MspR9I	CCNGG	4 cut(s)	241, 332, 1124, 1149
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	4 cut(s)	241, 332, 1124, 1149
MwoI	GCNNNNNNNGC	3 cut(s)	641, 1079, 1128
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	324, 949, 1188
NlaIII	CATG	5 cut(s)	48, 208, 274, 1135, 1196
NlaIV	GGNNCC	7 cut(s)	18, 182, 299, 300, 801, 1021, 1121
NspI	RCATGY	1 cut(s)	1135
PaeI	GCATGC	1 cut(s)	1135
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	276, 886, 991
PflMI	CCANNNNNTGG	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	930, 933
PleI	GAGTC	3 cut(s)	377, 706, 1039
PpsI	GAGTC	3 cut(s)	377, 706, 1039
Ppu21I	YACGTR	1 cut(s)	1164
PpuMI	RGGWCCY	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	4 cut(s)	239, 330, 1122, 1147
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	4 cut(s)	239, 330, 1122, 1147
PspN4I	GGNNCC	7 cut(s)	18, 182, 299, 300, 801, 1021, 1121
PspPI	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
PspPPI	RGGWCCY	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
RsaI	GTAC	2 cut(s)	209, 801
RsaNI	GTAC	2 cut(s)	208, 800
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	2 cut(s)	929, 932
Sau3AI	GATC	3 cut(s)	324, 949, 1188
Sau96I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
SchI	GAGTC	3 cut(s)	377, 706, 1039
ScrFI	CCNGG	4 cut(s)	241, 332, 1124, 1149
SduI	GDGCHC	1 cut(s)	681
SexAI	ACCWGGT	1 cut(s)	1147
SfaNI	GCATC	4 cut(s)	328, 427, 1060, 1093
SinI	GGWCC	3 cut(s)	181, 298, 965
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	4 cut(s)	303, 788, 836, 920
SmoI	CTYRAG	4 cut(s)	303, 788, 836, 920
SphI	GCATGC	1 cut(s)	1135
Sse9I	AATT	6 cut(s)	160, 283, 397, 688, 698, 1058
SsiI	CCGC	5 cut(s)	196, 434, 440, 566, 734
SspI	AATATT	2 cut(s)	367, 1027
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	4 cut(s)	239, 330, 1122, 1147
StyI	CCWWGG	2 cut(s)	44, 860
TaaI	ACNGT	2 cut(s)	339, 508
TaiI	ACGT	3 cut(s)	504, 599, 1166
TaqI	TCGA	2 cut(s)	327, 601
TaqII	GACCGA	1 cut(s)	982
TasI	AATT	6 cut(s)	160, 283, 397, 688, 698, 1058
TfiI	GAWTC	3 cut(s)	276, 886, 991
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	531, 686, 1142
TseI	GCWGC	2 cut(s)	928, 931
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	531, 686, 1142
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	181, 298, 965
XapI	RAATTY	4 cut(s)	397, 688, 698, 1058
XceI	RCATGY	1 cut(s)	1135
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.