Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

9677516 .. 9681373

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAATACTCCGAAGAAAGAAGCAGGACGGACTCTGGTGACGAGAATGGGTCCGAAGGTACTGTCACCCCTCTTCCCATGGCTCATTCTCCTAACCCTCATTCTCCTCCTCCTCTACTCCTCACTCCTCTCCTCCCCGCCACCCAAACCAATCCCCACTTTACCCTCGTGCAATCTCTTCAATGGCCACTGGGTCCAAGACCCCGACCGCACACCCATGTACGACGAGAGCTGCCCGTTTCACCGAAACGCGTGGAACTGCTTGAGGAACAAGAGGGACAACATGGGTGTCATCAATTCATGGAAATGGGTTCCTCGTGACTGCGACTTACCTCGGATCGACCCGGTTGAGTTTCTGGGTCTGATGAGGAACAGGAACATTGGGTTTGTCGGTGACTCTTTGAATGAGAATATGTTGGTGTCGTTTTTGTGCCTACTTCGGGTCGCGGATTTGGGGGCTAAGAAGTGGAAGAGGAAAGGGGCTTGGAGAGGTGCTTATTTTCCCAAGTTTAATGTTACGGTTGGCTACCATCGTGCTGTGTTGCTCGCTAAATATGAGTGGGAGCCAAAACAGCATACAGATGGTGATCAAGATGGACTCAAAGGAATATATCAAGTAGATGTTGACATTCCTTCTGATGATTGGGCAAACATTGGTGATTTCTATGATGTCCTTGTTTTCAACACTGGCCATTGGTGGGGCTTTGATAAATTCCCAAAAGAGACTCCTCTCACTTTCTATCGTGCGGGTGAACCAATATATCCTCCGCTTGATATATTGAGTGGATTTAAAGTTGTTGTCGAAAATATGGCTTCATATATACAAAACAAAGTTCCTTTGAAGACATTGAAGTTTTGGCGTTTACAATCACCAAGGCATTTTCATGGGGGTGACTGGAATCAAAATGGCAGTTGCTTGTTTAATAAACCCCTTGAGGAGCAACAGCTTGATTTGTGGTTTGATCCCAGCAACAATGGACCAAATAAAGAAGAAAGACTGCTGAATCGTCTCATAGAAGACGCATTGCAAGGAACTGATATTCAATTGCTTAACCTGACTCGTCTGAGTGAGTTCAGAGCAGATGCCCATCCAGCAATATGGTTGGGACAGAAGGATGCCGTCAAAGTCTGGGGCCAGGACTGCATGCACTGGTGCTTACCTGGTGTACCAGATACATGGGTTGACATTTTATCACAACTGATCCGTATTGGTTTGGAGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

409

Amino Acids

47.07

Weight (kDa)

7.1

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	56 - 109	9.2e-16	PMR5 N terminal Domain
PC-Esterase	PF13839	110 - 399	2e-72	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	251, 446
AciI	CCGC	5 cut(s)	137, 208, 446, 746, 767
AclWI	GGATC	3 cut(s)	344, 956, 1195
AcoI	YGGCCR	2 cut(s)	184, 688
AcsI	RAATTY	1 cut(s)	710
AfaI	GTAC	3 cut(s)	60, 221, 1167
AfiI	CCNNNNNNNGG	2 cut(s)	439, 697
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	6 cut(s)	181, 403, 682, 841, 850, 1043
AjnI	CCWGG	2 cut(s)	1134, 1159
AluBI	AGCT	2 cut(s)	231, 946
AluI	AGCT	2 cut(s)	231, 946
Alw26I	GTCTC	2 cut(s)	716, 1013
AlwI	GGATC	3 cut(s)	344, 956, 1195
AoxI	GGCC	3 cut(s)	184, 688, 1132
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	710
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	4 cut(s)	50, 193, 977, 1132
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	9 cut(s)	49, 57, 233, 404, 596, 668, 761, 861, 902
AvaII	GGWCC	3 cut(s)	50, 193, 977
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BalI	TGGCCA	2 cut(s)	186, 690
BauI	CACGAG	2 cut(s)	166, 315
BbsI	GAAGAC	2 cut(s)	848, 1023
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	4 cut(s)	537, 575, 587, 1095
BceAI	ACGGC	1 cut(s)	1103
BciT130I	CCWGG	2 cut(s)	1136, 1161
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	716, 1013
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	344, 1136, 1161
Bme18I	GGWCC	3 cut(s)	50, 193, 977
BmgT120I	GGNCC	4 cut(s)	50, 193, 977, 1132
BmiI	GGNNCC	5 cut(s)	51, 194, 312, 564, 1133
BmrFI	CCNGG	3 cut(s)	344, 1136, 1161
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	3 cut(s)	1072, 1105, 1209
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	848, 1023
BpuEI	CTTGAG	2 cut(s)	283, 953
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	2 cut(s)	585, 1086
BsaJI	CCNNGG	3 cut(s)	77, 332, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 697
Bse1I	ACTGG	4 cut(s)	194, 691, 899, 1154
Bse3DI	GCAATG	1 cut(s)	1022
Bse8I	GATNNNNATC	2 cut(s)	585, 1086
BseBI	CCWGG	2 cut(s)	1136, 1161
BseDI	CCNNGG	3 cut(s)	77, 332, 872
BseGI	GGATG	2 cut(s)	1087, 1120
BseJI	GATNNNNATC	2 cut(s)	585, 1086
BseLI	CCNNNNNNNGG	2 cut(s)	439, 697
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	1 cut(s)	1055
BseNI	ACTGG	4 cut(s)	194, 691, 899, 1154
BseRI	GAGGAG	8 cut(s)	95, 98, 101, 109, 116, 121, 717, 950
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	965
Bsh1236I	CGCG	2 cut(s)	251, 446
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	186, 690, 1134
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	290, 1119
BslI	CCNNNNNNNGG	2 cut(s)	439, 697
BsmAI	GTCTC	2 cut(s)	716, 1013
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	2 cut(s)	290, 1119
BsnI	GGCC	3 cut(s)	186, 690, 1134
Bsp143I	GATC	4 cut(s)	336, 586, 961, 1200
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	5 cut(s)	137, 208, 446, 746, 767
BspANI	GGCC	3 cut(s)	186, 690, 1134
BspCNI	CTCAG	1 cut(s)	1056
BspFNI	CGCG	2 cut(s)	251, 446
BspLI	GGNNCC	5 cut(s)	51, 194, 312, 564, 1133
BspPI	GGATC	3 cut(s)	344, 956, 1195
BsrDI	GCAATG	1 cut(s)	1022
BsrI	ACTGG	4 cut(s)	194, 691, 899, 1154
BssECI	CCNNGG	3 cut(s)	77, 332, 872
BssMI	GATC	4 cut(s)	336, 586, 961, 1200
BssSI	CACGAG	2 cut(s)	166, 315
BssT1I	CCWWGG	2 cut(s)	77, 872
Bst2BI	CACGAG	2 cut(s)	166, 315
Bst2UI	CCWGG	2 cut(s)	1136, 1161
Bst4CI	ACNGT	2 cut(s)	63, 520
Bst6I	CTCTTC	3 cut(s)	77, 182, 464
BstC8I	GCNNGC	2 cut(s)	546, 1145
BstDEI	CTNAG	2 cut(s)	459, 1064
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	1087, 1120
BstFNI	CGCG	2 cut(s)	251, 446
BstKTI	GATC	4 cut(s)	339, 589, 964, 1203
BstMAI	GTCTC	2 cut(s)	716, 1013
BstMBI	GATC	4 cut(s)	336, 586, 961, 1200
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	571, 1091, 1140
BstNI	CCWGG	2 cut(s)	1136, 1161
BstNSI	RCATGY	1 cut(s)	1147
BstSCI	CCNGG	3 cut(s)	342, 1134, 1159
BstUI	CGCG	2 cut(s)	251, 446
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	2 cut(s)	848, 1023
BstXI	CCANNNNNNTGG	2 cut(s)	1098, 1176
BsuRI	GGCC	3 cut(s)	186, 690, 1134
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	1087, 1120
BtsIMutI	CAGTG	3 cut(s)	187, 684, 1147
Cac8I	GCNNGC	2 cut(s)	546, 1145
Cfr13I	GGNCC	4 cut(s)	50, 193, 977, 1132
CseI	GACGC	1 cut(s)	1028
CsiI	ACCWGGT	1 cut(s)	1159
Csp6I	GTAC	3 cut(s)	59, 220, 1166
CviAII	CATG	7 cut(s)	78, 217, 283, 300, 884, 1144, 1176
CviQI	GTAC	3 cut(s)	59, 220, 1166
DdeI	CTNAG	2 cut(s)	459, 1064
DpnI	GATC	4 cut(s)	338, 588, 963, 1202
DpnII	GATC	4 cut(s)	336, 586, 961, 1200
DraI	TTTAAA	1 cut(s)	790
EaeI	YGGCCR	2 cut(s)	184, 688
Eam1104I	CTCTTC	3 cut(s)	77, 182, 464
EarI	CTCTTC	3 cut(s)	77, 182, 464
Eco130I	CCWWGG	2 cut(s)	77, 872
Eco47I	GGWCC	3 cut(s)	50, 193, 977
EcoRII	CCWGG	2 cut(s)	1134, 1159
EcoT14I	CCWWGG	2 cut(s)	77, 872
ErhI	CCWWGG	2 cut(s)	77, 872
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	7 cut(s)	81, 220, 286, 303, 887, 1147, 1179
FaqI	GGGAC	2 cut(s)	290, 1119
FatI	CATG	7 cut(s)	77, 216, 282, 299, 883, 1143, 1175
FauI	CCCGC	2 cut(s)	144, 739
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	1074, 1127
Fsp4HI	GCNGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	232
GsaI	CCCAGC	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	186, 690, 1134
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	1028
Hin1II	CATG	7 cut(s)	81, 220, 286, 303, 887, 1147, 1179
HincII	GTYRAC	2 cut(s)	625, 1183
HindII	GTYRAC	2 cut(s)	625, 1183
HinfI	GANTC	7 cut(s)	31, 395, 597, 724, 898, 1003, 1057
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	9 cut(s)	49, 57, 233, 404, 596, 668, 761, 861, 902
Hpy166II	GTNNAC	5 cut(s)	625, 752, 863, 1166, 1183
Hpy188I	TCNGA	7 cut(s)	12, 54, 336, 363, 637, 1065, 1076
Hpy188III	TCNNGA	2 cut(s)	317, 590
Hpy8I	GTNNAC	5 cut(s)	625, 752, 863, 1166, 1183
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	49, 642, 1105
HpyCH4III	ACNGT	2 cut(s)	63, 520
HpyCH4V	TGCA	5 cut(s)	171, 1027, 1143, 1147, 1222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	571, 1091, 1140
HpyF3I	CTNAG	2 cut(s)	459, 1064
Hsp92II	CATG	7 cut(s)	81, 220, 286, 303, 887, 1147, 1179
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	336, 586, 961, 1200
LmnI	GCTCC	2 cut(s)	562, 937
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	3 cut(s)	1072, 1105, 1209
MabI	ACCWGGT	1 cut(s)	1159
MaeIII	GTNAC	6 cut(s)	37, 63, 317, 392, 514, 890
MalI	GATC	4 cut(s)	338, 588, 963, 1202
MboI	GATC	4 cut(s)	336, 586, 961, 1200
MboII	GAAGA	7 cut(s)	25, 64, 169, 481, 853, 1001, 1028
MfeI	CAATTG	1 cut(s)	1043
MlsI	TGGCCA	2 cut(s)	186, 690
MluCI	AATT	3 cut(s)	295, 710, 1043
MluI	ACGCGT	1 cut(s)	249
MluNI	TGGCCA	2 cut(s)	186, 690
MlyI	GAGTC	5 cut(s)	25, 389, 591, 718, 1051
Mox20I	TGGCCA	2 cut(s)	186, 690
MscI	TGGCCA	2 cut(s)	186, 690
MseI	TTAA	4 cut(s)	510, 789, 921, 1050
MslI	CAYNNNNRTG	5 cut(s)	215, 304, 579, 882, 888
Msp20I	TGGCCA	2 cut(s)	186, 690
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	344, 1136, 1161
MunI	CAATTG	1 cut(s)	1043
MvaI	CCWGG	2 cut(s)	1136, 1161
MvnI	CGCG	2 cut(s)	251, 446
MwoI	GCNNNNNNNGC	3 cut(s)	571, 1091, 1140
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	336, 586, 961, 1200
NlaIII	CATG	7 cut(s)	81, 220, 286, 303, 887, 1147, 1179
NlaIV	GGNNCC	5 cut(s)	51, 194, 312, 564, 1133
NmuCI	GTSAC	5 cut(s)	37, 63, 317, 392, 890
NspI	RCATGY	1 cut(s)	1147
PaeI	GCATGC	1 cut(s)	1147
PfeI	GAWTC	2 cut(s)	898, 1003
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	5 cut(s)	25, 389, 591, 718, 1051
PpsI	GAGTC	5 cut(s)	25, 389, 591, 718, 1051
Psp6I	CCWGG	2 cut(s)	1134, 1159
PspFI	CCCAGC	1 cut(s)	965
PspGI	CCWGG	2 cut(s)	1134, 1159
PspN4I	GGNNCC	5 cut(s)	51, 194, 312, 564, 1133
PspPI	GGNCC	4 cut(s)	50, 193, 977, 1132
RsaI	GTAC	3 cut(s)	60, 221, 1167
RsaNI	GTAC	3 cut(s)	59, 220, 1166
RseI	CAYNNNNRTG	5 cut(s)	215, 304, 579, 882, 888
SaqAI	TTAA	4 cut(s)	510, 789, 921, 1050
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	4 cut(s)	336, 586, 961, 1200
Sau96I	GGNCC	4 cut(s)	50, 193, 977, 1132
SchI	GAGTC	5 cut(s)	25, 389, 591, 718, 1051
ScrFI	CCNGG	3 cut(s)	344, 1136, 1161
SetI	ASST	7 cut(s)	60, 233, 334, 493, 948, 1056, 1162
SexAI	ACCWGGT	1 cut(s)	1159
SfaNI	GCATC	3 cut(s)	1072, 1105, 1209
SinI	GGWCC	3 cut(s)	50, 193, 977
SmiMI	CAYNNNNRTG	5 cut(s)	215, 304, 579, 882, 888
SmlI	CTYRAG	2 cut(s)	262, 932
SmoI	CTYRAG	2 cut(s)	262, 932
SphI	GCATGC	1 cut(s)	1147
Sse9I	AATT	3 cut(s)	295, 710, 1043
SsiI	CCGC	5 cut(s)	137, 208, 446, 746, 767
StyD4I	CCNGG	3 cut(s)	342, 1134, 1159
StyI	CCWWGG	2 cut(s)	77, 872
TaaI	ACNGT	2 cut(s)	63, 520
TaqI	TCGA	2 cut(s)	339, 801
TasI	AATT	3 cut(s)	295, 710, 1043
TfiI	GAWTC	2 cut(s)	898, 1003
Tru1I	TTAA	4 cut(s)	510, 789, 921, 1050
Tru9I	TTAA	4 cut(s)	510, 789, 921, 1050
TscAI	CASTG	3 cut(s)	194, 691, 1154
TseFI	GTSAC	5 cut(s)	37, 63, 317, 392, 890
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	5 cut(s)	37, 63, 317, 392, 890
TspDTI	ATGAA	4 cut(s)	17, 288, 804, 872
TspGWI	ACGGA	2 cut(s)	43, 1193
TspRI	CASTG	3 cut(s)	194, 691, 1154
VpaK11BI	GGWCC	3 cut(s)	50, 193, 977
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.