Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Forward (+)

11095500 .. 11098682

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G076500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCACCCAAGCTGCTCTCACCCCTCTTCCCATGGCTCATTCTACTGACCCTCCTGCTCCTCTTCATCTACTCTTCACTCCTCCCCTTCCACACCCCCTCTCCACCATTCCCACAACACAAGAAAATCCCCACTTTACCTTCCTGCAATCTCTTCAATGGCCATTGGGTCCAAGACCCCAACCGCAGACCCATGTACGATGAGACCTGCCCATTTCACAGAAACGCCTGGAACTGCTTGAGGAACAAGAGGGATAATATGGGTACCATCAATTCTTGGAAATGGGTCCCTCAAGATTGCGTTTTGCATCGGATCGACCCGGTTCGATTTCTGGGTCTGATGAGGGATAGGAATATTGGGTTTGTCGGCGACTCTCTGAATGAGAACTTTTTGGTGTCGTTTTTGTGCACTCTGAGAGTGGCTGATTTGGGTGCTAAGAAGTGGAAGAGGAAGGGGGCTTGGAGAGGAGCTTATTTTCCTAAGTTCAATGTTACGGTGGGGTATCATCGGGCAGTGTTACTCGCCAGATATGAGTGGCAGCCGAAACAGCCTGCACATGGTGACCAAGATGGAGTGAAAGGAATATATCGAGTAGATGTTGATATTCCTGCTGATGATTGGGCCGACATTGCTGATTTTTATGATGTCCTTGTTTTCAATACTGGGCACTGGTGGAGTTCTGATAAGTTCCCAAAAGAGACTCCTCTCTCTTTTTATCGTGCGGGCAAACCAATCTTACCTCCCCTTGACATATTGGATGGATTTAAAGTTGTTCTTGAGAATATGGTCTCTTACATACAAAACAAACTTCCTCAAAAGACACTCAAGTTATGGCGGTTACAATCACCAAGGCATTTCTATGGGGGTGAGTGGAATCAAAATGGCAGTTGCTTGTTCAATAAGCCCCTTGAAGAGCAGCAGCTTGACTTGTGGTTTGACCCCAGCAACAATGGACCGAATAAAGAAGAAAGACTGCTGAATCATCTGATTGAAGACACTTTGCAACGAACCGATATTCAATTGCTTAACCTGACTTATCTGAGTGAGTTCAGAGTGGATGCCCATCCAGCAATTTGGTTGGGACAGAAGGATGCTGTCGCAATCTGGGGCCAGGACTGCATGCACTGGTGCTTACCTGGTGTACCAGATACATGGGTTGACATTTTAACAGAGCTGATCCGTATTGGATTGGAGATAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

401

Amino Acids

46.51

Weight (kDa)

7.63

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	4, 263
AciI	CCGC	3 cut(s)	184, 722, 835
AclWI	GGATC	2 cut(s)	320, 1171
AcoI	YGGCCR	1 cut(s)	160
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	3 cut(s)	197, 265, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	7 cut(s)	157, 487, 658, 898, 911, 992, 1019
AjnI	CCWGG	3 cut(s)	227, 1110, 1135
AluBI	AGCT	4 cut(s)	13, 470, 922, 1174
AluI	AGCT	4 cut(s)	13, 470, 922, 1174
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	3 cut(s)	197, 692, 793
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	320, 1171
AoxI	GGCC	3 cut(s)	160, 621, 1108
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	4 cut(s)	13, 538, 916, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	5 cut(s)	169, 286, 621, 953, 1108
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	4 cut(s)	12, 572, 837, 878
AvaII	GGWCC	3 cut(s)	169, 286, 953
BaeGI	GKGCMC	2 cut(s)	410, 669
BaeI	ACNNNNGTAYC	2 cut(s)	1140, 1173
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	2 cut(s)	4, 263
BbsI	GAAGAC	1 cut(s)	999
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	550, 928, 931
BccI	CCATC	4 cut(s)	275, 563, 752, 1071
BciT130I	CCWGG	3 cut(s)	229, 1112, 1137
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	3 cut(s)	197, 692, 793
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	4 cut(s)	14, 539, 917, 920
BlsI	GCNGC	4 cut(s)	15, 540, 918, 921
Bme1390I	CCNGG	4 cut(s)	229, 320, 1112, 1137
Bme18I	GGWCC	3 cut(s)	169, 286, 953
BmgT120I	GGNCC	5 cut(s)	169, 286, 621, 953, 1108
BmiI	GGNNCC	6 cut(s)	6, 170, 265, 287, 288, 1109
BmrFI	CCNGG	4 cut(s)	229, 320, 1112, 1137
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	3 cut(s)	316, 1048, 1081
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	999
BpuEI	CTTGAG	4 cut(s)	259, 276, 797, 809
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaI	GGTCTC	2 cut(s)	197, 793
BsaJI	CCNNGG	2 cut(s)	32, 848
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 85, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	667, 674, 1130
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	3 cut(s)	229, 1112, 1137
BseDI	CCNNGG	2 cut(s)	32, 848
BseGI	GGATG	4 cut(s)	763, 1063, 1063, 1096
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	404, 1031
BseNI	ACTGG	3 cut(s)	667, 674, 1130
BseRI	GAGGAG	4 cut(s)	50, 71, 480, 693
BseSI	GKGCMC	2 cut(s)	410, 669
BseXI	GCAGC	3 cut(s)	550, 928, 931
BseYI	CCCAGC	1 cut(s)	941
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	162, 623, 1110
BshNI	GGYRCC	2 cut(s)	4, 263
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	272, 1095
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	197, 692, 793
BsmFI	GGGAC	2 cut(s)	272, 1095
BsnI	GGCC	3 cut(s)	162, 623, 1110
Bso31I	GGTCTC	2 cut(s)	197, 793
Bsp1286I	GDGCHC	2 cut(s)	410, 669
Bsp143I	GATC	2 cut(s)	312, 1176
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	3 cut(s)	184, 722, 835
BspANI	GGCC	3 cut(s)	162, 623, 1110
BspCNI	CTCAG	2 cut(s)	405, 1032
BspLI	GGNNCC	6 cut(s)	6, 170, 265, 287, 288, 1109
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	320, 1171
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	4, 263
BspTNI	GGTCTC	2 cut(s)	197, 793
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	667, 674, 1130
BssECI	CCNNGG	2 cut(s)	32, 848
BssMI	GATC	2 cut(s)	312, 1176
BssT1I	CCWWGG	2 cut(s)	32, 848
Bst2UI	CCWGG	3 cut(s)	229, 1112, 1137
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	6 cut(s)	32, 68, 79, 158, 440, 906
BstC8I	GCNNGC	3 cut(s)	552, 724, 1121
BstDEI	CTNAG	4 cut(s)	413, 435, 480, 1040
BstDSI	CCRYGG	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	560
BstF5I	GGATG	4 cut(s)	763, 1063, 1063, 1096
BstKTI	GATC	2 cut(s)	315, 1179
BstMAI	GTCTC	3 cut(s)	197, 692, 793
BstMBI	GATC	2 cut(s)	312, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	547, 629, 1067, 1116
BstNI	CCWGG	3 cut(s)	229, 1112, 1137
BstNSI	RCATGY	1 cut(s)	1123
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	4 cut(s)	227, 318, 1110, 1135
BstSLI	GKGCMC	2 cut(s)	410, 669
BstV1I	GCAGC	3 cut(s)	550, 928, 931
BstV2I	GAAGAC	1 cut(s)	999
BstXI	CCANNNNNNTGG	2 cut(s)	1074, 1152
BsuRI	GGCC	3 cut(s)	162, 623, 1110
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	4 cut(s)	763, 1063, 1063, 1096
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	519, 667, 1123
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	552, 724, 1121
Cfr13I	GGNCC	5 cut(s)	169, 286, 621, 953, 1108
CsiI	ACCWGGT	1 cut(s)	1135
Csp6I	GTAC	3 cut(s)	196, 264, 1142
CviAII	CATG	5 cut(s)	33, 193, 557, 1120, 1152
CviQI	GTAC	3 cut(s)	196, 264, 1142
DdeI	CTNAG	4 cut(s)	413, 435, 480, 1040
DpnI	GATC	2 cut(s)	314, 1178
DpnII	GATC	2 cut(s)	312, 1176
DraI	TTTAAA	1 cut(s)	766
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	6 cut(s)	32, 68, 79, 158, 440, 906
EarI	CTCTTC	6 cut(s)	32, 68, 79, 158, 440, 906
Eco130I	CCWWGG	2 cut(s)	32, 848
Eco31I	GGTCTC	2 cut(s)	197, 793
Eco47I	GGWCC	3 cut(s)	169, 286, 953
Eco91I	GGTNACC	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	227, 1110, 1135
EcoT14I	CCWWGG	2 cut(s)	32, 848
ErhI	CCWWGG	2 cut(s)	32, 848
FaeI	CATG	5 cut(s)	36, 196, 560, 1123, 1155
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FaqI	GGGAC	2 cut(s)	272, 1095
FatI	CATG	5 cut(s)	32, 192, 556, 1119, 1151
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	14, 539, 917, 920
FokI	GGATG	4 cut(s)	770, 1050, 1070, 1103
Fsp4HI	GCNGC	4 cut(s)	14, 539, 917, 920
GluI	GCNGC	4 cut(s)	14, 539, 917, 920
GsaI	CCCAGC	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	162, 623, 1110
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	5 cut(s)	36, 196, 560, 1123, 1155
HincII	GTYRAC	1 cut(s)	1159
HindII	GTYRAC	1 cut(s)	1159
HinfI	GANTC	4 cut(s)	371, 700, 874, 979
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	4 cut(s)	12, 572, 837, 878
Hpy166II	GTNNAC	3 cut(s)	408, 1142, 1159
Hpy188I	TCNGA	8 cut(s)	312, 339, 378, 414, 682, 987, 1041, 1052
Hpy188III	TCNNGA	2 cut(s)	293, 776
Hpy8I	GTNNAC	3 cut(s)	408, 1142, 1159
HpyAV	CCTTC	4 cut(s)	97, 150, 445, 1081
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	147, 307, 408, 554, 1003, 1119, 1123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	547, 629, 1067, 1116
HpyF3I	CTNAG	4 cut(s)	413, 435, 480, 1040
Hsp92II	CATG	5 cut(s)	36, 196, 560, 1123, 1155
KflI	GGGWCCC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	312, 1176
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	63, 467
Lsp1109I	GCAGC	3 cut(s)	550, 928, 931
LweI	GCATC	3 cut(s)	316, 1048, 1081
MabI	ACCWGGT	1 cut(s)	1135
MaeIII	GTNAC	4 cut(s)	490, 516, 560, 837
MalI	GATC	2 cut(s)	314, 1178
MboI	GATC	2 cut(s)	312, 1176
MboII	GAAGA	8 cut(s)	19, 55, 66, 145, 457, 923, 977, 1004
MfeI	CAATTG	1 cut(s)	1019
MhlI	GDGCHC	2 cut(s)	410, 669
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	271, 1019, 1071
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	365, 694
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	3 cut(s)	765, 1026, 1166
MslI	CAYNNNNRTG	1 cut(s)	858
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	4 cut(s)	229, 320, 1112, 1137
MunI	CAATTG	1 cut(s)	1019
MvaI	CCWGG	3 cut(s)	229, 1112, 1137
MwoI	GCNNNNNNNGC	4 cut(s)	547, 629, 1067, 1116
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	312, 1176
NlaIII	CATG	5 cut(s)	36, 196, 560, 1123, 1155
NlaIV	GGNNCC	6 cut(s)	6, 170, 265, 287, 288, 1109
NmuCI	GTSAC	1 cut(s)	560
NspI	RCATGY	1 cut(s)	1123
PaeI	GCATGC	1 cut(s)	1123
PciSI	GCTCTTC	1 cut(s)	906
PfeI	GAWTC	2 cut(s)	874, 979
PkrI	GCNGC	4 cut(s)	15, 540, 918, 921
PleI	GAGTC	2 cut(s)	365, 694
PpsI	GAGTC	2 cut(s)	365, 694
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	3 cut(s)	227, 1110, 1135
PspEI	GGTNACC	1 cut(s)	560
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	3 cut(s)	227, 1110, 1135
PspN4I	GGNNCC	6 cut(s)	6, 170, 265, 287, 288, 1109
PspPI	GGNCC	5 cut(s)	169, 286, 621, 953, 1108
PspPPI	RGGWCCY	1 cut(s)	286
RsaI	GTAC	3 cut(s)	197, 265, 1143
RsaNI	GTAC	3 cut(s)	196, 264, 1142
RseI	CAYNNNNRTG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	765, 1026, 1166
SatI	GCNGC	4 cut(s)	14, 539, 917, 920
Sau3AI	GATC	2 cut(s)	312, 1176
Sau96I	GGNCC	5 cut(s)	169, 286, 621, 953, 1108
SchI	GAGTC	2 cut(s)	365, 694
ScrFI	CCNGG	4 cut(s)	229, 320, 1112, 1137
SduI	GDGCHC	2 cut(s)	410, 669
SetI	ASST	9 cut(s)	15, 142, 209, 472, 742, 924, 1032, 1138, 1176
SexAI	ACCWGGT	1 cut(s)	1135
SfaNI	GCATC	3 cut(s)	316, 1048, 1081
SinI	GGWCC	3 cut(s)	169, 286, 953
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	4 cut(s)	238, 291, 776, 824
SmoI	CTYRAG	4 cut(s)	238, 291, 776, 824
SphI	GCATGC	1 cut(s)	1123
Sse9I	AATT	3 cut(s)	271, 1019, 1071
SsiI	CCGC	3 cut(s)	184, 722, 835
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	4 cut(s)	227, 318, 1110, 1135
StyI	CCWWGG	2 cut(s)	32, 848
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	315, 325, 589
TaqII	GACCGA	1 cut(s)	970
TasI	AATT	3 cut(s)	271, 1019, 1071
TfiI	GAWTC	2 cut(s)	874, 979
Tru1I	TTAA	3 cut(s)	765, 1026, 1166
Tru9I	TTAA	3 cut(s)	765, 1026, 1166
TscAI	CASTG	3 cut(s)	519, 674, 1130
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	4 cut(s)	13, 538, 916, 919
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	1169
TspRI	CASTG	3 cut(s)	519, 674, 1130
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	169, 286, 953
XceI	RCATGY	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.