Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002750.1

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

84375 .. 87049

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002750.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atggctccgaagctactgtcacccctcttccaatggctcattctcctaaccctccttctcctctttctctactcctcactcctctccttccacacatcctcaccgcaacccaaaccaatccccactttaccctcctgcaatttcttcaatggccattgggtccaagaccccgaccgcagacccatgtacgacgagagctgcccatttcacaggaacgcctggaactgcttcaggaacaagagggacaacatgggtgtcatcaattcctggaaatgggttcctcgtgattgcgtcttgcctcggatcgacccggttcggtttctgggtctgatgaggaacaggaacattgggtttgttggtgactctttgaatgagaattttctgctgtcgtttttgtgcgtacttagggtggcggatttgggggctaagaagtggaagaggaaaggggcttggagaggtgcctattttcccaagttcaatgttacggtggggtatcatcgagctgtgttgctctccaaatatgagtggcagcccaaacagcatgcagatggtgatcaagatggactcaaaggaatatatcgagtagatgttgatattccttcagatgattgggcaaacattggtgatttctatgatgtccttgttttcaacactggccattggtggggctttgataaattcccaaaagaaactcctctcactttctatcgtgcgggtgaacctatatatcctccgcttgatatactgggtggatttaaagtagttgttgagaatatggccgcatacatacaaaacaaaattcctctgaagacattgaagttatggcgtttacaatcaccaaggcattttcatgggggtgactggaatcaaaatggcagttgcttgtttaataaaccccttgaggagcaacaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

305

Amino Acids

35.5

Weight (kDa)

9.23

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	3 cut(s)	151, 655, 777
AcsI	RAATTY	3 cut(s)	376, 677, 798
AcuI	CTGAAG	3 cut(s)	214, 585, 827
AfaI	GTAC	2 cut(s)	188, 402
AfiI	CCNNNNNNNGG	2 cut(s)	273, 664
AgsI	TTSAA	5 cut(s)	148, 370, 478, 649, 817
AjnI	CCWGG	2 cut(s)	218, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	13, 198, 503
AluI	AGCT	3 cut(s)	13, 198, 503
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	3 cut(s)	151, 655, 777
ApeKI	GCWGC	2 cut(s)	198, 529
ApoI	RAATTY	3 cut(s)	376, 677, 798
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	2 cut(s)	153, 657
BanI	GGYRCC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	185, 541
BccI	CCATC	2 cut(s)	542, 554
BciT130I	CCWGG	2 cut(s)	220, 268
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	199, 530, 780
BlsI	GCNGC	3 cut(s)	200, 531, 781
Bme1390I	CCNGG	3 cut(s)	220, 268, 311
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	4 cut(s)	6, 161, 279, 460
BmrFI	CCNGG	3 cut(s)	220, 268, 311
BmrI	ACTGGG	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	299, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 664
Bse1I	ACTGG	3 cut(s)	658, 750, 866
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	220, 268
BseDI	CCNNGG	2 cut(s)	299, 839
BseGI	GGATG	1 cut(s)	95
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	273, 664
BseNI	ACTGG	3 cut(s)	658, 750, 866
BseRI	GAGGAG	5 cut(s)	50, 64, 71, 684, 917
BseXI	GCAGC	2 cut(s)	185, 541
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	153, 657, 779
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	273, 664
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	153, 657, 779
Bsp143I	GATC	2 cut(s)	303, 553
BspACI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
BspANI	GGCC	3 cut(s)	153, 657, 779
BspLI	GGNNCC	4 cut(s)	6, 161, 279, 460
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	658, 750, 866
BssECI	CCNNGG	2 cut(s)	299, 839
BssMI	GATC	2 cut(s)	303, 553
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	839
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	220, 268
Bst4CI	ACNGT	2 cut(s)	18, 487
Bst6I	CTCTTC	2 cut(s)	32, 431
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	404, 426
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	306, 556
BstMBI	GATC	2 cut(s)	303, 553
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	2 cut(s)	220, 268
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	3 cut(s)	218, 266, 309
BstV1I	GCAGC	2 cut(s)	185, 541
BstV2I	GAAGAC	1 cut(s)	815
BsuRI	GGCC	3 cut(s)	153, 657, 779
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	187, 401
CviAII	CATG	4 cut(s)	184, 250, 542, 851
CviQI	GTAC	2 cut(s)	187, 401
DdeI	CTNAG	2 cut(s)	404, 426
DpnI	GATC	2 cut(s)	305, 555
DpnII	GATC	2 cut(s)	303, 553
DraI	TTTAAA	1 cut(s)	757
EaeI	YGGCCR	3 cut(s)	151, 655, 777
Eam1104I	CTCTTC	2 cut(s)	32, 431
EarI	CTCTTC	2 cut(s)	32, 431
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	3 cut(s)	214, 585, 827
EcoRII	CCWGG	2 cut(s)	218, 266
EcoT14I	CCWWGG	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	839
FaeI	CATG	4 cut(s)	187, 253, 545, 854
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	183, 249, 541, 850
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	199, 530, 780
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	199, 530, 780
GluI	GCNGC	3 cut(s)	199, 530, 780
HaeIII	GGCC	3 cut(s)	153, 657, 779
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	187, 253, 545, 854
HinfI	GANTC	3 cut(s)	362, 564, 865
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
Hpy166II	GTNNAC	2 cut(s)	719, 830
Hpy188I	TCNGA	5 cut(s)	9, 303, 330, 604, 807
Hpy188III	TCNNGA	3 cut(s)	232, 284, 557
Hpy8I	GTNNAC	2 cut(s)	719, 830
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	65, 97, 609
HpyCH4III	ACNGT	2 cut(s)	18, 487
HpyCH4V	TGCA	2 cut(s)	138, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	2 cut(s)	404, 426
Hsp92II	CATG	4 cut(s)	187, 253, 545, 854
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	303, 553
LmnI	GCTCC	2 cut(s)	10, 904
Lsp1109I	GCAGC	2 cut(s)	185, 541
MaeIII	GTNAC	4 cut(s)	18, 359, 481, 857
MalI	GATC	2 cut(s)	305, 555
MboI	GATC	2 cut(s)	303, 553
MboII	GAAGA	4 cut(s)	19, 136, 448, 820
MlsI	TGGCCA	2 cut(s)	153, 657
MluCI	AATT	5 cut(s)	139, 262, 376, 677, 798
MluNI	TGGCCA	2 cut(s)	153, 657
MlyI	GAGTC	2 cut(s)	356, 558
Mox20I	TGGCCA	2 cut(s)	153, 657
MroXI	GAANNNNTTC	1 cut(s)	227
MscI	TGGCCA	2 cut(s)	153, 657
MseI	TTAA	2 cut(s)	756, 888
MslI	CAYNNNNRTG	3 cut(s)	546, 849, 855
Msp20I	TGGCCA	2 cut(s)	153, 657
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	220, 268, 311
MvaI	CCWGG	2 cut(s)	220, 268
MwoI	GCNNNNNNNGC	1 cut(s)	538
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	303, 553
NlaIII	CATG	4 cut(s)	187, 253, 545, 854
NlaIV	GGNNCC	4 cut(s)	6, 161, 279, 460
NmuCI	GTSAC	3 cut(s)	18, 359, 857
NspI	RCATGY	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	865
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	200, 531, 781
PleI	GAGTC	2 cut(s)	356, 558
PpsI	GAGTC	2 cut(s)	356, 558
Psp6I	CCWGG	2 cut(s)	218, 266
PspGI	CCWGG	2 cut(s)	218, 266
PspN4I	GGNNCC	4 cut(s)	6, 161, 279, 460
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	2 cut(s)	188, 402
RsaNI	GTAC	2 cut(s)	187, 401
RseI	CAYNNNNRTG	3 cut(s)	546, 849, 855
SaqAI	TTAA	2 cut(s)	756, 888
SatI	GCNGC	3 cut(s)	199, 530, 780
Sau3AI	GATC	2 cut(s)	303, 553
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	356, 558
ScrFI	CCNGG	3 cut(s)	220, 268, 311
SetI	ASST	6 cut(s)	15, 200, 460, 505, 724, 915
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	3 cut(s)	546, 849, 855
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	5 cut(s)	139, 262, 376, 677, 798
SsiI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
StyD4I	CCNGG	3 cut(s)	218, 266, 309
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	18, 487
TaqI	TCGA	3 cut(s)	306, 499, 580
TasI	AATT	5 cut(s)	139, 262, 376, 677, 798
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	1 cut(s)	865
Tru1I	TTAA	2 cut(s)	756, 888
Tru9I	TTAA	2 cut(s)	756, 888
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	3 cut(s)	18, 359, 857
TseI	GCWGC	2 cut(s)	198, 529
Tsp45I	GTSAC	3 cut(s)	18, 359, 857
TspDTI	ATGAA	1 cut(s)	839
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	3 cut(s)	376, 677, 798
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.