Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000474.1

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Reverse (-)

151915 .. 155169

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000474.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggctccgaagctactgtcacccctcttccaatggctcattctcctaaccctccttctcctctttctctactcctcactcctctccttccacacatcctcaccgcaacccaaaacaatccccactttaccctcctgcaatttcttcaacggccattgggtccaagaccccgaccgcaggcccatgtacgacgagagctgcccatttcacaggaacgcctggaactgcttcaggaacaagagggacaacatgggtgtcatcaattcctggaaatgggttcctcgtgattgcgtcttgcctcggatcgacccggttcggtttctgggtctgatgaggaacaggaacattgggtttgttggtgactctttgaatgagaattttctgctgtcgtttttgtgcgtacttagggtggcggatttgggggctaagaagtggaagaggaaaggggcttggagaggtgcctattttcccaagttcaatgttacggtggggtatcatcgagctgtgttgctctccaaatatgagtggcagcccaaacagcatgcagatggtgatcaagatggactcaaaggaatatatcgagtagatgttgatattccttcagatgattgggcaaacattggtgatttctatgatgtccttgttttcaacactggccattggtggggctttgataaattcccaaaagaaactcctctcactttctatcgtgcgggtgaacctatatatcctccgcttgatatactgggtggatttaaagtagttgttgagaatatggccgcatacatacaaaacaaaattcctctgaagacattgaagttatggcgtttacaatcaccaaggcattttcatgggggtgactggaatcaaaatggcagttgcttgtttaataaaccccttgaggagcaacagcttgacttgtggtttgatcccagcaacaatggaccaaataaagaagaaagactgctgaatcgtctcatagaagacgcattgcaaggaactgatattcaattgcttaacttgactcatctgagtgagttcagagcagatgcccatccagcaatttggttgggacagaaggatgccgtcaaagtctggggccaggactgcatgcactggtgcctacctggtgtaccagatacatgggttgacattttatcagagctgatccgtattggtttggagctgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

397

Amino Acids

45.98

Weight (kDa)

7.62

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	458, 1119
AciI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
AclWI	GGATC	3 cut(s)	311, 923, 1162
AcoI	YGGCCR	3 cut(s)	151, 655, 777
AcsI	RAATTY	3 cut(s)	376, 677, 798
AcuI	CTGAAG	3 cut(s)	214, 585, 827
AfaI	GTAC	3 cut(s)	188, 402, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	177, 273, 664
AgsI	TTSAA	6 cut(s)	148, 370, 478, 649, 817, 1010
AjnI	CCWGG	4 cut(s)	218, 266, 1101, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	6 cut(s)	13, 198, 503, 913, 1165, 1186
AluI	AGCT	6 cut(s)	13, 198, 503, 913, 1165, 1186
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	3 cut(s)	311, 923, 1162
AoxI	GGCC	5 cut(s)	151, 179, 655, 777, 1099
ApeKI	GCWGC	2 cut(s)	198, 529
ApoI	RAATTY	3 cut(s)	376, 677, 798
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 908, 940
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	4 cut(s)	160, 180, 944, 1099
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
AvaII	GGWCC	2 cut(s)	160, 944
BaeI	ACNNNNGTAYC	2 cut(s)	1131, 1164
BalI	TGGCCA	1 cut(s)	657
BanI	GGYRCC	2 cut(s)	458, 1119
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	815, 990
BbvI	GCAGC	2 cut(s)	185, 541
BccI	CCATC	3 cut(s)	542, 554, 1062
BceAI	ACGGC	2 cut(s)	166, 1070
BciT130I	CCWGG	4 cut(s)	220, 268, 1103, 1128
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	980
BisI	GCNGC	3 cut(s)	199, 530, 780
BlsI	GCNGC	3 cut(s)	200, 531, 781
Bme1390I	CCNGG	5 cut(s)	220, 268, 311, 1103, 1128
Bme18I	GGWCC	2 cut(s)	160, 944
BmgT120I	GGNCC	4 cut(s)	160, 180, 944, 1099
BmiI	GGNNCC	6 cut(s)	6, 161, 279, 460, 1100, 1121
BmrFI	CCNGG	5 cut(s)	220, 268, 311, 1103, 1128
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	2 cut(s)	1039, 1072
BmuI	ACTGGG	1 cut(s)	755
BpiI	GAAGAC	2 cut(s)	815, 990
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	552, 1053
BsaJI	CCNNGG	2 cut(s)	299, 839
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 273, 664
Bse1I	ACTGG	4 cut(s)	658, 750, 866, 1121
Bse3DI	GCAATG	1 cut(s)	989
Bse8I	GATNNNNATC	2 cut(s)	552, 1053
BseBI	CCWGG	4 cut(s)	220, 268, 1103, 1128
BseDI	CCNNGG	2 cut(s)	299, 839
BseGI	GGATG	3 cut(s)	95, 1054, 1087
BseJI	GATNNNNATC	2 cut(s)	552, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	177, 273, 664
BseMI	GCAATG	1 cut(s)	989
BseMII	CTCAG	1 cut(s)	1022
BseNI	ACTGG	4 cut(s)	658, 750, 866, 1121
BseRI	GAGGAG	5 cut(s)	50, 64, 71, 684, 917
BseXI	GCAGC	2 cut(s)	185, 541
BseYI	CCCAGC	2 cut(s)	932, 1186
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	5 cut(s)	153, 181, 657, 779, 1101
BshNI	GGYRCC	2 cut(s)	458, 1119
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	257, 1086
BslI	CCNNNNNNNGG	3 cut(s)	177, 273, 664
BsmAI	GTCTC	1 cut(s)	980
BsmBI	CGTCTC	1 cut(s)	980
BsmFI	GGGAC	2 cut(s)	257, 1086
BsnI	GGCC	5 cut(s)	153, 181, 657, 779, 1101
Bsp143I	GATC	4 cut(s)	303, 553, 928, 1167
BspACI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
BspANI	GGCC	5 cut(s)	153, 181, 657, 779, 1101
BspCNI	CTCAG	1 cut(s)	1023
BspLI	GGNNCC	6 cut(s)	6, 161, 279, 460, 1100, 1121
BspPI	GGATC	3 cut(s)	311, 923, 1162
BspT107I	GGYRCC	2 cut(s)	458, 1119
BsrDI	GCAATG	1 cut(s)	989
BsrI	ACTGG	4 cut(s)	658, 750, 866, 1121
BssECI	CCNNGG	2 cut(s)	299, 839
BssMI	GATC	4 cut(s)	303, 553, 928, 1167
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	839
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	4 cut(s)	220, 268, 1103, 1128
Bst4CI	ACNGT	2 cut(s)	18, 487
Bst6I	CTCTTC	2 cut(s)	32, 431
BstC8I	GCNNGC	3 cut(s)	179, 543, 1112
BstDEI	CTNAG	3 cut(s)	404, 426, 1031
BstF5I	GGATG	3 cut(s)	95, 1054, 1087
BstKTI	GATC	4 cut(s)	306, 556, 931, 1170
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	4 cut(s)	303, 553, 928, 1167
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
BstNI	CCWGG	4 cut(s)	220, 268, 1103, 1128
BstNSI	RCATGY	2 cut(s)	545, 1114
BstSCI	CCNGG	5 cut(s)	218, 266, 309, 1101, 1126
BstV1I	GCAGC	2 cut(s)	185, 541
BstV2I	GAAGAC	2 cut(s)	815, 990
BstXI	CCANNNNNNTGG	2 cut(s)	1065, 1143
BsuRI	GGCC	5 cut(s)	153, 181, 657, 779, 1101
BtsCI	GGATG	3 cut(s)	95, 1054, 1087
BtsIMutI	CAGTG	2 cut(s)	651, 1114
Cac8I	GCNNGC	3 cut(s)	179, 543, 1112
Cfr13I	GGNCC	4 cut(s)	160, 180, 944, 1099
CseI	GACGC	2 cut(s)	280, 995
CsiI	ACCWGGT	1 cut(s)	1126
Csp6I	GTAC	3 cut(s)	187, 401, 1133
CviAII	CATG	6 cut(s)	184, 250, 542, 851, 1111, 1143
CviQI	GTAC	3 cut(s)	187, 401, 1133
DdeI	CTNAG	3 cut(s)	404, 426, 1031
DpnI	GATC	4 cut(s)	305, 555, 930, 1169
DpnII	GATC	4 cut(s)	303, 553, 928, 1167
DraI	TTTAAA	1 cut(s)	757
EaeI	YGGCCR	3 cut(s)	151, 655, 777
Eam1104I	CTCTTC	2 cut(s)	32, 431
EarI	CTCTTC	2 cut(s)	32, 431
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	839
Eco47I	GGWCC	2 cut(s)	160, 944
Eco57I	CTGAAG	3 cut(s)	214, 585, 827
EcoRII	CCWGG	4 cut(s)	218, 266, 1101, 1126
EcoT14I	CCWWGG	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	980
FaeI	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
FaqI	GGGAC	2 cut(s)	257, 1086
FatI	CATG	6 cut(s)	183, 249, 541, 850, 1110, 1142
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	199, 530, 780
FokI	GGATG	3 cut(s)	82, 1041, 1094
Fsp4HI	GCNGC	3 cut(s)	199, 530, 780
GluI	GCNGC	3 cut(s)	199, 530, 780
GsaI	CCCAGC	2 cut(s)	936, 1190
HaeIII	GGCC	5 cut(s)	153, 181, 657, 779, 1101
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	2 cut(s)	280, 995
Hin1II	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
HincII	GTYRAC	1 cut(s)	1150
HindII	GTYRAC	1 cut(s)	1150
HinfI	GANTC	5 cut(s)	362, 564, 865, 970, 1024
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	8 cut(s)	12, 93, 371, 563, 635, 728, 828, 869
Hpy166II	GTNNAC	4 cut(s)	719, 830, 1133, 1150
Hpy188I	TCNGA	8 cut(s)	9, 303, 330, 604, 807, 1032, 1043, 1162
Hpy188III	TCNNGA	3 cut(s)	232, 284, 557
Hpy8I	GTNNAC	4 cut(s)	719, 830, 1133, 1150
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	65, 97, 609, 1072
HpyCH4III	ACNGT	2 cut(s)	18, 487
HpyCH4V	TGCA	5 cut(s)	138, 545, 994, 1110, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
HpyF3I	CTNAG	3 cut(s)	404, 426, 1031
Hsp92II	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	303, 553, 928, 1167
LmnI	GCTCC	3 cut(s)	10, 904, 1183
Lsp1109I	GCAGC	2 cut(s)	185, 541
LweI	GCATC	2 cut(s)	1039, 1072
MabI	ACCWGGT	1 cut(s)	1126
MaeIII	GTNAC	4 cut(s)	18, 359, 481, 857
MalI	GATC	4 cut(s)	305, 555, 930, 1169
MboI	GATC	4 cut(s)	303, 553, 928, 1167
MboII	GAAGA	6 cut(s)	19, 136, 448, 820, 968, 995
MfeI	CAATTG	1 cut(s)	1010
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	7 cut(s)	139, 262, 376, 677, 798, 1010, 1062
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	3 cut(s)	356, 558, 1018
Mox20I	TGGCCA	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	3 cut(s)	756, 888, 1017
MslI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
Msp20I	TGGCCA	1 cut(s)	657
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	5 cut(s)	220, 268, 311, 1103, 1128
MunI	CAATTG	1 cut(s)	1010
MvaI	CCWGG	4 cut(s)	220, 268, 1103, 1128
MwoI	GCNNNNNNNGC	3 cut(s)	538, 1058, 1107
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	4 cut(s)	303, 553, 928, 1167
NlaIII	CATG	6 cut(s)	187, 253, 545, 854, 1114, 1146
NlaIV	GGNNCC	6 cut(s)	6, 161, 279, 460, 1100, 1121
NmuCI	GTSAC	3 cut(s)	18, 359, 857
NspI	RCATGY	2 cut(s)	545, 1114
PaeI	GCATGC	2 cut(s)	545, 1114
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	865, 970
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	200, 531, 781
PleI	GAGTC	3 cut(s)	356, 558, 1018
PpsI	GAGTC	3 cut(s)	356, 558, 1018
Psp6I	CCWGG	4 cut(s)	218, 266, 1101, 1126
PspFI	CCCAGC	2 cut(s)	932, 1186
PspGI	CCWGG	4 cut(s)	218, 266, 1101, 1126
PspN4I	GGNNCC	6 cut(s)	6, 161, 279, 460, 1100, 1121
PspPI	GGNCC	4 cut(s)	160, 180, 944, 1099
RsaI	GTAC	3 cut(s)	188, 402, 1134
RsaNI	GTAC	3 cut(s)	187, 401, 1133
RseI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
SaqAI	TTAA	3 cut(s)	756, 888, 1017
SatI	GCNGC	3 cut(s)	199, 530, 780
Sau3AI	GATC	4 cut(s)	303, 553, 928, 1167
Sau96I	GGNCC	4 cut(s)	160, 180, 944, 1099
SchI	GAGTC	3 cut(s)	356, 558, 1018
ScrFI	CCNGG	5 cut(s)	220, 268, 311, 1103, 1128
SetI	ASST	9 cut(s)	15, 200, 460, 505, 724, 915, 1129, 1167, 1188
SexAI	ACCWGGT	1 cut(s)	1126
SfaNI	GCATC	2 cut(s)	1039, 1072
SinI	GGWCC	2 cut(s)	160, 944
SmiMI	CAYNNNNRTG	4 cut(s)	546, 849, 855, 1032
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	2 cut(s)	545, 1114
Sse9I	AATT	7 cut(s)	139, 262, 376, 677, 798, 1010, 1062
SsiI	CCGC	6 cut(s)	104, 175, 413, 713, 734, 780
StyD4I	CCNGG	5 cut(s)	218, 266, 309, 1101, 1126
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	18, 487
TaqI	TCGA	3 cut(s)	306, 499, 580
TasI	AATT	7 cut(s)	139, 262, 376, 677, 798, 1010, 1062
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	865, 970
Tru1I	TTAA	3 cut(s)	756, 888, 1017
Tru9I	TTAA	3 cut(s)	756, 888, 1017
TscAI	CASTG	2 cut(s)	658, 1121
TseFI	GTSAC	3 cut(s)	18, 359, 857
TseI	GCWGC	2 cut(s)	198, 529
Tsp45I	GTSAC	3 cut(s)	18, 359, 857
TspDTI	ATGAA	1 cut(s)	839
TspGWI	ACGGA	1 cut(s)	1160
TspRI	CASTG	2 cut(s)	658, 1121
VpaK11BI	GGWCC	2 cut(s)	160, 944
XapI	RAATTY	3 cut(s)	376, 677, 798
XceI	RCATGY	2 cut(s)	545, 1114
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.