Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005402

Physical Location & Seq

Genomic Coordinates Forward (+)

4666375 .. 4668974

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCTTCTAACAATGCCACCCAAGCTCCTCTCTCCCCTCTTCCCATGGCTTATTCTACTGACCCTCTTCCTCCTCTTCCTCTACTCCTCACTCCTCCCCTTCCACCCACCCTCTCCACCAACCCCTCCATCCAACAAGTTCCCCACTTTACCCTCCTGCAATTTCTTCAAAGGTCATTGGGTCCAAGACCCCAACCGCAGACCCATGTACGATGAGACCTGCCCATTTCACAGAAACTCCTGGAACTGCCTCAGGAACAAGAGGGACAACATGGGAATCATCAATTCTTGGAAATGGGTCCCTCAAGGTTGCGTCTTGCATCGGATCGACCCGGCACGGTTTCTGGGTCGGATGAGGAACAGGAATATTGGGTTCGTCGGCGACTCGCTGAATGAGAATTTTTTGGTGTCGTTTTTGTGCATTCTGAGAGTGGCTGATGCGGGTGCTAAGAAGTGGAAGAGGAAGGGGGCTTGGAGAGGAGCTTATTTTCCCAAGTTCAACGTTACGGTGGGGTATCATCGGGCAGTGTTGCTCGCTAAATATGAGTGGCAACCAAAACAGACTGCGGGTGGGGATGAAGATGGATTGAAAGGAACTTATCGAGTAGATGTTGATATTCCTGCCAATGATTGGGCCAACATTGCTGATTTTTATGATGTCCTAGTTTTCAATACAGGGCACTGGTGGAATTCTGATAAGTTTCCAAAAGAGAGTTCTCTCACTTTTTATCGTGCGGGCAAACCAATACTACCTCCCCTTGATATATTAGATGGATTTAAAGTTGTTCTTGAGAATATGGTACCATACATACAAAACAAAGTTCCTCACAAGACACTCAAGATATGGCGTTTACAATCTCCAAGGCATTTTTATGGAGGTGATTGGAATCAGAACGGCAGTTGCTTGTTCAATAAGCCCCTTGAGGAGCAGCAGCTTGACTTGTGGTTTGACCCCAGCAACAATGGACCAAACAAAGAAGAAAGACTGCTGAATCGTCTGATTGAAGGTGCATTACAAGGAACCAATATTCAACTGCTTGACCTGACTCAACCGAGTGAATTCAGAGCAGATGCCCATCCAGCGATTTGGTTGGGACAGAAGGATGCCGTTTCAGTCTGGGGCCAGGACTGCATGCACTGGTGCTTGCCTGGTGTACCGGACACATGGGTTGACATATTATCAGAGCTGATCCATGTTGGGTTGGAGTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

405

Amino Acids

46.53

Weight (kDa)

8.67

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	52 - 104	1.2e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	107 - 395	1.8e-71	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64470 AT5G64470 AT5G64470 AT5G64470
fragaria_vesca	FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080 FvH4_2g11080
malus_domestica	MD10G1057700.v1.1
prunus_persica	Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1 Prupe.8G076500_v2.0.a1
pyrus_communis	pycom10g04450
rosa_chinensis	RchiOBHm_Chr6g0269281
rosa_laevigata	RLG00000013862
rosa_multiflora	Rmu_sc0002750.1_g000024 Rmu_ssc0000474.1_g000044
rosa_roxburghii	Rroxscaffold_7G00198880
rosa_rugosa	Rorug06G0047300 Rorug06G0047300
rosa_samantha	Rh6AG166900 Rh6BG172500 Rh6CG166300 Rh6DG158000
rosa_wichuraiana	Rw6G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
Acc65I	GGTACC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	799
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	4 cut(s)	196, 440, 566, 734
AclI	AACGTT	1 cut(s)	501
AclWI	GGATC	2 cut(s)	332, 1183
AcsI	RAATTY	3 cut(s)	397, 688, 1058
AfaI	GTAC	3 cut(s)	209, 801, 1155
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	7 cut(s)	169, 499, 589, 670, 910, 1004, 1031
AjnI	CCWGG	3 cut(s)	239, 1122, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	4 cut(s)	25, 482, 934, 1186
AluI	AGCT	4 cut(s)	25, 482, 934, 1186
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	332, 1183
AoxI	GGCC	2 cut(s)	633, 1120
ApeKI	GCWGC	2 cut(s)	928, 931
ApoI	RAATTY	3 cut(s)	397, 688, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
Asp718I	GGTACC	1 cut(s)	799
AspS9I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	890
AvaII	GGWCC	3 cut(s)	181, 298, 965
AxyI	CCTNAGG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	799
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
BbvI	GCAGC	2 cut(s)	940, 943
BccI	CCATC	4 cut(s)	136, 575, 764, 1083
BceAI	ACGGC	2 cut(s)	910, 1091
BciT130I	CCWGG	3 cut(s)	241, 1124, 1149
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	929, 932
BlsI	GCNGC	2 cut(s)	930, 933
Bme1390I	CCNGG	4 cut(s)	241, 332, 1124, 1149
Bme18I	GGWCC	3 cut(s)	181, 298, 965
BmgT120I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
BmiI	GGNNCC	6 cut(s)	182, 299, 300, 801, 1021, 1121
BmrFI	CCNGG	4 cut(s)	241, 332, 1124, 1149
BmsI	GCATC	4 cut(s)	328, 427, 1060, 1093
BpuEI	CTTGAG	4 cut(s)	288, 809, 821, 941
BpuMI	CCSGG	1 cut(s)	332
BsaBI	GATNNNNATC	2 cut(s)	885, 1074
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	44, 860
BsaWI	WCCGGW	1 cut(s)	1156
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	686, 1142
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	2 cut(s)	885, 1074
BseBI	CCWGG	3 cut(s)	241, 1124, 1149
BseDI	CCNNGG	2 cut(s)	44, 860
BseGI	GGATG	5 cut(s)	128, 357, 580, 1075, 1108
BseJI	GATNNNNATC	2 cut(s)	885, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	265, 416
BseNI	ACTGG	2 cut(s)	686, 1142
BseRI	GAGGAG	6 cut(s)	17, 62, 76, 83, 492, 938
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	2 cut(s)	940, 943
BseYI	CCCAGC	1 cut(s)	953
BshFI	GGCC	2 cut(s)	635, 1122
BshNI	GGYRCC	1 cut(s)	799
BsiSI	CCGG	2 cut(s)	332, 1157
BslFI	GGGAC	3 cut(s)	278, 284, 1107
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	278, 284, 1107
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	635, 1122
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	324, 1188
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	4 cut(s)	196, 440, 566, 734
BspANI	GGCC	2 cut(s)	635, 1122
BspCNI	CTCAG	2 cut(s)	264, 417
BspLI	GGNNCC	6 cut(s)	182, 299, 300, 801, 1021, 1121
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	332, 1183
BspT107I	GGYRCC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	686, 1142
BssECI	CCNNGG	2 cut(s)	44, 860
BssMI	GATC	2 cut(s)	324, 1188
BssT1I	CCWWGG	2 cut(s)	44, 860
Bst2UI	CCWGG	3 cut(s)	241, 1124, 1149
Bst4CI	ACNGT	2 cut(s)	339, 508
Bst6I	CTCTTC	4 cut(s)	44, 71, 80, 452
BstC8I	GCNNGC	4 cut(s)	534, 736, 1133, 1145
BstDEI	CTNAG	3 cut(s)	251, 425, 447
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	5 cut(s)	128, 357, 580, 1075, 1108
BstKTI	GATC	2 cut(s)	327, 1191
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	324, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 641, 1079, 1128
BstNI	CCWGG	3 cut(s)	241, 1124, 1149
BstNSI	RCATGY	1 cut(s)	1135
BstSCI	CCNGG	4 cut(s)	239, 330, 1122, 1147
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	2 cut(s)	940, 943
BstXI	CCANNNNNNTGG	1 cut(s)	1086
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	635, 1122
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	5 cut(s)	128, 357, 580, 1075, 1108
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	531, 679, 1135
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	4 cut(s)	534, 736, 1133, 1145
Cfr13I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	208, 800, 1154
CviAII	CATG	6 cut(s)	45, 205, 271, 1132, 1164, 1193
CviQI	GTAC	3 cut(s)	208, 800, 1154
DdeI	CTNAG	3 cut(s)	251, 425, 447
DpnI	GATC	2 cut(s)	326, 1190
DpnII	GATC	2 cut(s)	324, 1188
DraI	TTTAAA	1 cut(s)	778
Eam1104I	CTCTTC	4 cut(s)	44, 71, 80, 452
EarI	CTCTTC	4 cut(s)	44, 71, 80, 452
Eco130I	CCWWGG	2 cut(s)	44, 860
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	181, 298, 965
Eco81I	CCTNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	2 cut(s)	688, 1058
EcoRII	CCWGG	3 cut(s)	239, 1122, 1147
EcoT14I	CCWWGG	2 cut(s)	44, 860
ErhI	CCWWGG	2 cut(s)	44, 860
FaeI	CATG	6 cut(s)	48, 208, 274, 1135, 1167, 1196
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	278, 284, 1107
FatI	CATG	6 cut(s)	44, 204, 270, 1131, 1163, 1192
FauI	CCCGC	3 cut(s)	433, 559, 727
Fnu4HI	GCNGC	2 cut(s)	929, 932
FokI	GGATG	5 cut(s)	115, 364, 587, 1062, 1115
Fsp4HI	GCNGC	2 cut(s)	929, 932
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	2 cut(s)	929, 932
GsaI	CCCAGC	1 cut(s)	957
HaeIII	GGCC	2 cut(s)	635, 1122
HapII	CCGG	2 cut(s)	332, 1157
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	6 cut(s)	48, 208, 274, 1135, 1167, 1196
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HinfI	GANTC	5 cut(s)	276, 383, 886, 991, 1045
HpaII	CCGG	2 cut(s)	332, 1157
HphI	GGTGA	1 cut(s)	890
Hpy166II	GTNNAC	3 cut(s)	851, 1154, 1171
Hpy188I	TCNGA	8 cut(s)	324, 351, 426, 694, 891, 999, 1064, 1183
Hpy188III	TCNNGA	3 cut(s)	253, 788, 838
Hpy8I	GTNNAC	3 cut(s)	851, 1154, 1171
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	4 cut(s)	109, 457, 998, 1093
HpyCH4III	ACNGT	2 cut(s)	339, 508
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	159, 319, 420, 1010, 1131, 1135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 641, 1079, 1128
HpyF3I	CTNAG	3 cut(s)	251, 425, 447
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	6 cut(s)	48, 208, 274, 1135, 1167, 1196
KflI	GGGWCCC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	803
Kzo9I	GATC	2 cut(s)	324, 1188
LmnI	GCTCC	3 cut(s)	30, 479, 925
Lsp1109I	GCAGC	2 cut(s)	940, 943
LweI	GCATC	4 cut(s)	328, 427, 1060, 1093
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	2 cut(s)	326, 1190
MboI	GATC	2 cut(s)	324, 1188
MboII	GAAGA	7 cut(s)	31, 58, 67, 157, 469, 590, 989
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	160, 283, 397, 688, 1058
MlyI	GAGTC	2 cut(s)	377, 1039
MmeI	TCCRAC	3 cut(s)	156, 329, 1182
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	870
MspI	CCGG	2 cut(s)	332, 1157
MspR9I	CCNGG	4 cut(s)	241, 332, 1124, 1149
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	3 cut(s)	241, 1124, 1149
MwoI	GCNNNNNNNGC	4 cut(s)	22, 641, 1079, 1128
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	324, 1188
NlaIII	CATG	6 cut(s)	48, 208, 274, 1135, 1167, 1196
NlaIV	GGNNCC	6 cut(s)	182, 299, 300, 801, 1021, 1121
NspI	RCATGY	1 cut(s)	1135
PaeI	GCATGC	1 cut(s)	1135
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	276, 886, 991
PflMI	CCANNNNNTGG	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	930, 933
PleI	GAGTC	2 cut(s)	377, 1039
PpsI	GAGTC	2 cut(s)	377, 1039
PpuMI	RGGWCCY	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	239, 1122, 1147
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	3 cut(s)	239, 1122, 1147
PspN4I	GGNNCC	6 cut(s)	182, 299, 300, 801, 1021, 1121
PspPI	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
PspPPI	RGGWCCY	1 cut(s)	298
RsaI	GTAC	3 cut(s)	209, 801, 1155
RsaNI	GTAC	3 cut(s)	208, 800, 1154
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	2 cut(s)	929, 932
Sau3AI	GATC	2 cut(s)	324, 1188
Sau96I	GGNCC	5 cut(s)	181, 298, 633, 965, 1120
SchI	GAGTC	2 cut(s)	377, 1039
ScrFI	CCNGG	4 cut(s)	241, 332, 1124, 1149
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	4 cut(s)	328, 427, 1060, 1093
SinI	GGWCC	3 cut(s)	181, 298, 965
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	4 cut(s)	303, 788, 836, 920
SmoI	CTYRAG	4 cut(s)	303, 788, 836, 920
SphI	GCATGC	1 cut(s)	1135
Sse9I	AATT	5 cut(s)	160, 283, 397, 688, 1058
SsiI	CCGC	4 cut(s)	196, 440, 566, 734
SspI	AATATT	2 cut(s)	367, 1027
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	4 cut(s)	239, 330, 1122, 1147
StyI	CCWWGG	2 cut(s)	44, 860
TaaI	ACNGT	2 cut(s)	339, 508
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	327, 601
TasI	AATT	5 cut(s)	160, 283, 397, 688, 1058
TfiI	GAWTC	3 cut(s)	276, 886, 991
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	531, 686, 1142
TseI	GCWGC	2 cut(s)	928, 931
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	531, 686, 1142
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	181, 298, 965
XapI	RAATTY	3 cut(s)	397, 688, 1058
XceI	RCATGY	1 cut(s)	1135
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.