Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Reverse (-)

26515905 .. 26517599

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCAAGTCATTGAACATCCTTATTGCAGCTCTCTCGCTCATTGCATTTTCTCCTTTTTGTTTGTGTTCCAAAGCCTATGGAAGTGGCGGCTATCTCTTTCCTCAGTTTTATGACCAATCGTGTCCTAAAGCTCAAGAGATTGTTCAGTCCATTGTCGCTAAAGCATTCGAACATGATCCTCGCATGCCTGCCTCCTTGCTCAGACTCCATTTCCACGACTGTTTCGTCAAGGGATGTGATGCTTCCATACTATTGGACAGCAGTGGAACCATAATCAGCGAGAAACGATCAAACCCTAACAGAAACTCAGCCCGTGGTTTCGAACTCATCGAGGAAATCAAACATGCCTTAGAACAAGAGTGTCCTGAAACAGTTTCTTGCGCTGATATCTTGGCTCTAGCCGCTAGAGACTCAACTGTTATTACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGAGCAAGCTTGAGTGGTTCCAACAACGACATTCCTGCTCCAAACAACACTTTCCAAACCATCCTCACTAAGTTCAAGCGTCAAGGCCTTGATCTCGTCGATCTTGTCTCCCTCTCAGGAAGTCACACCATTGGAAACTCGAGGTGCACAAGTTTCCGACAGAGGTTATACAATCAATCCGGCAACGGAAAGCCTGATATGACTCTTAGCCAATACTATGCAACACTATTGCGTCAACGATGTCCGAGATCCGGAGGTGACCAGACCCTATTCTTCCTCGACTTCGCGACACCGTTCAAGTTTGACAACCACTACTTCAAGAACCTGATAATGTACAAAGGTCTATTGAGCTCTGATGAGATTCTGTTCACGAAGAACAAACAGTCCAAGGAGCTGGTGGAGCTATACGCTGAGAATCAAGAGGCCTTCTTTGAGCAGTTTGCTAAATCGATGGTGAAGATGGGAAATATCTCTCCGTTGACAGGCGCCAAGGGAGAGATCAGGCGTATCTGTCGGAGGGTTAACCATGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

336

Amino Acids

37.43

Weight (kDa)

8.74

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 297	2.8e-82	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	959
AccII	CGCG	2 cut(s)	470, 761
AccIII	TCCGGA	1 cut(s)	725
AciI	CCGC	2 cut(s)	90, 405
AclWI	GGATC	2 cut(s)	173, 717
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	960
AfaI	GTAC	2 cut(s)	450, 809
AfiI	CCNNNNNNNGG	2 cut(s)	725, 956
AgsI	TTSAA	4 cut(s)	16, 550, 772, 793
AloI	GAACNNNNNNTCC	2 cut(s)	842, 874
AluBI	AGCT	7 cut(s)	32, 134, 441, 483, 825, 868, 877
AluI	AGCT	7 cut(s)	32, 134, 441, 483, 825, 868, 877
Alw21I	GWGCWC	2 cut(s)	623, 827
Alw26I	GTCTC	3 cut(s)	405, 459, 586
Alw44I	GTGCAC	1 cut(s)	619
AlwI	GGATC	2 cut(s)	173, 717
Ama87I	CYCGRG	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	725
AoxI	GGCC	3 cut(s)	3, 559, 897
ApaLI	GTGCAC	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	386, 962
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	743, 940
AsuII	TTCGAA	2 cut(s)	171, 324
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	959
BanII	GRGCYC	1 cut(s)	827
Bbv12I	GWGCWC	2 cut(s)	623, 827
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	542, 919, 928
BcgI	CGANNNNNNTGC	4 cut(s)	18, 52, 491, 525
BcoDI	GTCTC	3 cut(s)	405, 459, 586
BfaI	CTAG	3 cut(s)	401, 408, 455
BfoI	RGCGCY	1 cut(s)	963
BisI	GCNGC	3 cut(s)	30, 91, 405
BlsI	GCNGC	3 cut(s)	31, 92, 406
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	3 cut(s)	271, 493, 961
BmsI	GCATC	1 cut(s)	232
Bpu14I	TTCGAA	2 cut(s)	171, 324
BpuEI	CTTGAG	2 cut(s)	120, 505
Bsa29I	ATCGAT	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	316, 861, 963
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 956
Bse3DI	GCAATG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	725
BseCI	ATCGAT	1 cut(s)	923
BseDI	CCNNGG	3 cut(s)	316, 861, 963
BseGI	GGATG	3 cut(s)	18, 242, 534
BseLI	CCNNNNNNNGG	2 cut(s)	725, 956
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	5 cut(s)	119, 217, 324, 603, 876
BseRI	GAGGAG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	441
Bsh1236I	CGCG	2 cut(s)	470, 761
BshFI	GGCC	3 cut(s)	5, 561, 899
BshNI	GGYRCC	1 cut(s)	959
BshVI	ATCGAT	1 cut(s)	923
BsiHKAI	GWGCWC	2 cut(s)	623, 827
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	654, 726
BslI	CCNNNNNNNGG	2 cut(s)	725, 956
BsmAI	GTCTC	3 cut(s)	405, 459, 586
BsmBI	CGTCTC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	5, 561, 899
BsoBI	CYCGRG	1 cut(s)	613
Bsp119I	TTCGAA	2 cut(s)	171, 324
Bsp1286I	GDGCHC	2 cut(s)	623, 827
Bsp13I	TCCGGA	1 cut(s)	725
Bsp1407I	TGTACA	1 cut(s)	807
Bsp143I	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
Bsp68I	TCGCGA	1 cut(s)	761
BspACI	CCGC	2 cut(s)	90, 405
BspANI	GGCC	3 cut(s)	5, 561, 899
BspCNI	CTCAG	5 cut(s)	118, 216, 323, 602, 877
BspDI	ATCGAT	1 cut(s)	923
BspEI	TCCGGA	1 cut(s)	725
BspFNI	CGCG	2 cut(s)	470, 761
BspLI	GGNNCC	3 cut(s)	271, 493, 961
BspPI	GGATC	2 cut(s)	173, 717
BspT104I	TTCGAA	2 cut(s)	171, 324
BspT107I	GGYRCC	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	807
BssECI	CCNNGG	3 cut(s)	316, 861, 963
BssMI	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
BssNI	GRCGYC	1 cut(s)	960
BssT1I	CCWWGG	2 cut(s)	861, 963
Bst4CI	ACNGT	5 cut(s)	224, 376, 421, 768, 858
Bst6I	CTCTTC	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	960
BstAUI	TGTACA	1 cut(s)	807
BstBI	TTCGAA	2 cut(s)	171, 324
BstC8I	GCNNGC	3 cut(s)	188, 192, 481
BstDEI	CTNAG	8 cut(s)	105, 203, 310, 352, 543, 589, 680, 885
BstDSI	CCRYGG	1 cut(s)	316
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	3 cut(s)	18, 242, 534
BstFNI	CGCG	2 cut(s)	470, 761
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	386, 962
BstKTI	GATC	6 cut(s)	181, 293, 568, 577, 725, 975
BstMAI	GTCTC	3 cut(s)	405, 459, 586
BstMBI	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 476, 874
BstNSI	RCATGY	2 cut(s)	190, 350
BstPI	GGTNACC	1 cut(s)	731
BstSLI	GKGCMC	1 cut(s)	623
BstUI	CGCG	2 cut(s)	470, 761
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	722
BstXI	CCANNNNNNTGG	2 cut(s)	256, 868
BstYI	RGATCY	1 cut(s)	722
Bsu15I	ATCGAT	1 cut(s)	923
BsuRI	GGCC	3 cut(s)	5, 561, 899
BsuTUI	ATCGAT	1 cut(s)	923
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	18, 242, 534
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
BtuMI	TCGCGA	1 cut(s)	761
Cac8I	GCNNGC	3 cut(s)	188, 192, 481
CfoI	GCGC	2 cut(s)	386, 962
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	923
CseI	GACGC	3 cut(s)	476, 542, 695
Csp6I	GTAC	2 cut(s)	449, 808
CviAII	CATG	4 cut(s)	176, 187, 347, 1001
CviQI	GTAC	2 cut(s)	449, 808
DdeI	CTNAG	8 cut(s)	105, 203, 310, 352, 543, 589, 680, 885
DinI	GGCGCC	1 cut(s)	961
DpnI	GATC	6 cut(s)	180, 292, 567, 576, 724, 974
DpnII	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Ecl136II	GAGCTC	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	861, 963
Eco147I	AGGCCT	2 cut(s)	561, 899
Eco24I	GRGCYC	1 cut(s)	827
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	613
Eco91I	GGTNACC	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	825
EcoO65I	GGTNACC	1 cut(s)	731
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	861, 963
EcoT38I	GRGCYC	1 cut(s)	827
EgeI	GGCGCC	1 cut(s)	961
EheI	GGCGCC	1 cut(s)	961
ErhI	CCWWGG	2 cut(s)	861, 963
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	4 cut(s)	179, 190, 350, 1004
FatI	CATG	4 cut(s)	175, 186, 346, 1000
Fnu4HI	GCNGC	3 cut(s)	30, 91, 405
FokI	GGATG	3 cut(s)	5, 249, 521
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	3 cut(s)	30, 91, 405
FspBI	CTAG	3 cut(s)	401, 408, 455
GlaI	GCGC	2 cut(s)	385, 961
GluI	GCNGC	3 cut(s)	30, 91, 405
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	5, 561, 899
HapII	CCGG	2 cut(s)	654, 726
HgaI	GACGC	3 cut(s)	476, 542, 695
HhaI	GCGC	2 cut(s)	386, 962
Hin1I	GRCGYC	1 cut(s)	960
Hin1II	CATG	4 cut(s)	179, 190, 350, 1004
Hin6I	GCGC	2 cut(s)	384, 960
HinP1I	GCGC	2 cut(s)	384, 960
HincII	GTYRAC	3 cut(s)	710, 954, 997
HindII	GTYRAC	3 cut(s)	710, 954, 997
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	5 cut(s)	207, 413, 676, 835, 889
HpaI	GTTAAC	1 cut(s)	997
HpaII	CCGG	2 cut(s)	654, 726
HphI	GGTGA	2 cut(s)	743, 940
Hpy166II	GTNNAC	6 cut(s)	434, 621, 710, 843, 954, 997
Hpy188I	TCNGA	5 cut(s)	206, 632, 720, 829, 990
Hpy188III	TCNNGA	8 cut(s)	137, 368, 591, 726, 760, 793, 844, 893
Hpy8I	GTNNAC	6 cut(s)	434, 621, 710, 843, 954, 997
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	1 cut(s)	910
HpyCH4III	ACNGT	5 cut(s)	224, 376, 421, 768, 858
HpyCH4V	TGCA	4 cut(s)	29, 47, 621, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 476, 874
HpyF3I	CTNAG	8 cut(s)	105, 203, 310, 352, 543, 589, 680, 885
Hsp92I	GRCGYC	1 cut(s)	960
Hsp92II	CATG	4 cut(s)	179, 190, 350, 1004
HspAI	GCGC	2 cut(s)	384, 960
KasI	GGCGCC	1 cut(s)	959
Kpn2I	TCCGGA	1 cut(s)	725
KspAI	GTTAAC	1 cut(s)	997
Kzo9I	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
LmnI	GCTCC	4 cut(s)	476, 517, 865, 874
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	401, 408, 455
MaeIII	GTNAC	2 cut(s)	596, 731
MalI	GATC	6 cut(s)	180, 292, 567, 576, 724, 974
MboI	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
MboII	GAAGA	5 cut(s)	471, 474, 739, 859, 943
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	2 cut(s)	623, 827
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	960
MlyI	GAGTC	3 cut(s)	201, 407, 670
MmeI	TCCRAC	3 cut(s)	519, 655, 968
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	996, 1009
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	654, 726
Mva1269I	GAATGC	1 cut(s)	167
MvnI	CGCG	2 cut(s)	470, 761
MwoI	GCNNNNNNNGC	3 cut(s)	404, 476, 874
NarI	GGCGCC	1 cut(s)	960
NdeII	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
NlaIII	CATG	4 cut(s)	179, 190, 350, 1004
NlaIV	GGNNCC	3 cut(s)	271, 493, 961
NmuCI	GTSAC	2 cut(s)	596, 731
NruI	TCGCGA	1 cut(s)	761
NspI	RCATGY	2 cut(s)	190, 350
NspV	TTCGAA	2 cut(s)	171, 324
PaeI	GCATGC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	613
PceI	AGGCCT	2 cut(s)	561, 899
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 330, 434
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	835, 889
PkrI	GCNGC	3 cut(s)	31, 92, 406
PleI	GAGTC	3 cut(s)	201, 407, 670
PluTI	GGCGCC	1 cut(s)	963
PpsI	GAGTC	3 cut(s)	201, 407, 670
Psp124BI	GAGCTC	1 cut(s)	827
PspEI	GGTNACC	1 cut(s)	731
PspFI	CCCAGC	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	271, 493, 961
PspPI	GGNCC	1 cut(s)	434
PspXI	VCTCGAGB	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	722
RruI	TCGCGA	1 cut(s)	761
RsaI	GTAC	2 cut(s)	450, 809
RsaNI	GTAC	2 cut(s)	449, 808
SacI	GAGCTC	1 cut(s)	827
SaqAI	TTAA	2 cut(s)	996, 1009
SatI	GCNGC	3 cut(s)	30, 91, 405
Sau3AI	GATC	6 cut(s)	178, 290, 565, 574, 722, 972
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	3 cut(s)	201, 407, 670
SduI	GDGCHC	2 cut(s)	623, 827
SfaNI	GCATC	1 cut(s)	232
SfoI	GGCGCC	1 cut(s)	961
Sfr274I	CTCGAG	1 cut(s)	613
SfuI	TTCGAA	2 cut(s)	171, 324
SinI	GGWCC	1 cut(s)	434
SlaI	CTCGAG	1 cut(s)	613
SmlI	CTYRAG	3 cut(s)	135, 484, 613
SmoI	CTYRAG	3 cut(s)	135, 484, 613
SphI	GCATGC	1 cut(s)	190
SseBI	AGGCCT	2 cut(s)	561, 899
SsiI	CCGC	2 cut(s)	90, 405
SspDI	GGCGCC	1 cut(s)	959
SspMI	CTAG	3 cut(s)	401, 408, 455
SstI	GAGCTC	1 cut(s)	827
StuI	AGGCCT	2 cut(s)	561, 899
StyI	CCWWGG	2 cut(s)	861, 963
TaaI	ACNGT	5 cut(s)	224, 376, 421, 768, 858
TaqI	TCGA	7 cut(s)	171, 324, 333, 573, 614, 753, 923
TaqII	GACCGA	1 cut(s)	451
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	2 cut(s)	93, 407
TfiI	GAWTC	2 cut(s)	835, 889
Tru1I	TTAA	2 cut(s)	996, 1009
Tru9I	TTAA	2 cut(s)	996, 1009
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	596, 731
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	596, 731
TspGWI	ACGGA	2 cut(s)	675, 939
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	434
XceI	RCATGY	2 cut(s)	190, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XhoI	CTCGAG	1 cut(s)	613
XspI	CTAG	3 cut(s)	401, 408, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.