Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001095.1

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Forward (+)

62241 .. 63681

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001095.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggcaaagtctttgctcttccttctagctctttctctcattgcctttgctccactgtgtttctgttacaacaataacaatcatggtggctatctctacccacagttctatgaccactcttgccccaaagctcaacagattgtgcagtccattgttgcaaaggctgttgcaagagaagcaagaatggcggcttctttgcttaggctgcacttccatgactgctttgtaaagggttgtgatggatcaatccttttggacagtagcaagaacataatcaccgagaagaggtctaacccgaatctgaattcaatccgagggttagaagtaattgatgagatcaaatctgcgatagagaaggagtgtcccagcactgtgtcttgtgctgacattgtcgctctagctgctagagattccactgttttagctggaggaccacactgggaagtcccagtaggaagaagagactctagaggcgcgagtttaagcggctcgaacaatgaaatccctgctccaaacaacacattccaaaccattctcaccaagttcaagaggcaaaagcttaacattgttgatcttgttgcactatctggaagtcacacaattggaaatgccaggtgcaccacttttagacagagactttacaaccaaacaggaagagggcttgctgacttcactcttgaccagtcatatgctgccagtttgaggaaaaattgcccaagatctggtggagaccaaaacctgttcttcctggactttgtgagcccaacaaagtttgacaacagctacttcaagaacttattggctaacaagggcctgcttaactctgaccaagttcttgttacaaagagtgaagtagccaagcaattggttcagcaatatgcaatgaacaacgagcttttccttgagcaatttgccaagtccatgattaagatggggaatctttcaccaattacaggttcaaggggagagatcagaaagaattgcaggaaggtcaactactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

334

Amino Acids

36.93

Weight (kDa)

9.32

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	188, 486
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	304
AfiI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
AgsI	TTSAA	4 cut(s)	309, 547, 790, 960
AjnI	CCWGG	2 cut(s)	611, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	940, 972
AluBI	AGCT	7 cut(s)	29, 131, 401, 425, 559, 783, 895
AluI	AGCT	7 cut(s)	29, 131, 401, 425, 559, 783, 895
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	3 cut(s)	456, 628, 723
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	811
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	205, 401, 692
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	431, 811
AsuHPI	GGTGA	3 cut(s)	268, 529, 936
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	192, 388, 679
BccI	CCATC	2 cut(s)	233, 925
BciT130I	CCWGG	2 cut(s)	613, 749
BcoDI	GTCTC	3 cut(s)	456, 628, 723
BfaI	CTAG	4 cut(s)	26, 398, 405, 468
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
BlsI	GCNGC	5 cut(s)	190, 207, 403, 488, 694
Bme1390I	CCNGG	2 cut(s)	613, 749
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	431, 811
BmrFI	CCNGG	2 cut(s)	613, 749
BmrI	ACTGGG	2 cut(s)	443, 448
BmuI	ACTGGG	2 cut(s)	443, 448
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	923
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
Bse1I	ACTGG	4 cut(s)	443, 449, 682, 696
Bse3DI	GCAATG	2 cut(s)	39, 888
BseBI	CCWGG	2 cut(s)	613, 749
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BseMI	GCAATG	2 cut(s)	39, 888
BseNI	ACTGG	4 cut(s)	443, 449, 682, 696
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	192, 388, 679
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	164, 191
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	348, 431
BslI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BsmAI	GTCTC	3 cut(s)	456, 628, 723
BsmFI	GGGAC	2 cut(s)	348, 431
BsnI	GGCC	1 cut(s)	813
Bso31I	GGTCTC	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	620, 764
Bsp143I	GATC	5 cut(s)	242, 336, 571, 719, 969
BspACI	CCGC	2 cut(s)	188, 486
BspANI	GGCC	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	723
BsrDI	GCAATG	2 cut(s)	39, 888
BsrI	ACTGG	4 cut(s)	443, 449, 682, 696
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	242, 336, 571, 719, 969
Bst2UI	CCWGG	2 cut(s)	613, 749
Bst4CI	ACNGT	5 cut(s)	57, 105, 260, 373, 418
Bst6I	CTCTTC	4 cut(s)	23, 278, 454, 649
BstC8I	GCNNGC	2 cut(s)	663, 815
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	5 cut(s)	245, 339, 574, 722, 972
BstMAI	GTCTC	3 cut(s)	456, 628, 723
BstMBI	GATC	5 cut(s)	242, 336, 571, 719, 969
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
BstNI	CCWGG	2 cut(s)	613, 749
BstSCI	CCNGG	2 cut(s)	611, 747
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	192, 388, 679
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	813
BtsIMutI	CAGTG	4 cut(s)	53, 369, 414, 436
Cac8I	GCNNGC	2 cut(s)	663, 815
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	431, 811
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	3 cut(s)	83, 215, 922
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	5 cut(s)	244, 338, 573, 721, 971
DpnII	GATC	5 cut(s)	242, 336, 571, 719, 969
Eam1104I	CTCTTC	4 cut(s)	23, 278, 454, 649
EarI	CTCTTC	4 cut(s)	23, 278, 454, 649
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	611, 747
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	3 cut(s)	86, 218, 925
FaiI	YATR	8 cut(s)	84, 111, 216, 272, 688, 690, 879, 923
FaqI	GGGAC	2 cut(s)	348, 431
FatI	CATG	3 cut(s)	82, 214, 921
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
FspBI	CTAG	4 cut(s)	26, 398, 405, 468
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	813
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	86, 218, 925
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	4 cut(s)	298, 410, 464, 937
HphI	GGTGA	3 cut(s)	268, 529, 936
Hpy166II	GTNNAC	2 cut(s)	618, 994
Hpy188I	TCNGA	4 cut(s)	303, 314, 826, 974
Hpy188III	TCNNGA	6 cut(s)	468, 547, 588, 677, 790, 1002
Hpy8I	GTNNAC	2 cut(s)	618, 994
HpyAV	CCTTC	3 cut(s)	32, 349, 982
HpyCH4III	ACNGT	5 cut(s)	57, 105, 260, 373, 418
HpyCH4V	TGCA	8 cut(s)	145, 158, 170, 208, 581, 618, 881, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	86, 218, 925
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	242, 336, 571, 719, 969
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	55, 514
Lsp1109I	GCAGC	3 cut(s)	192, 388, 679
MaeI	CTAG	4 cut(s)	26, 398, 405, 468
MaeIII	GTNAC	3 cut(s)	65, 593, 838
MalI	GATC	5 cut(s)	244, 338, 573, 721, 971
MboI	GATC	5 cut(s)	242, 336, 571, 719, 969
MboII	GAAGA	6 cut(s)	10, 295, 468, 471, 666, 736
MfeI	CAATTG	2 cut(s)	600, 863
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	2 cut(s)	620, 764
MluCI	AATT	8 cut(s)	304, 327, 600, 709, 863, 908, 948, 979
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	7 cut(s)	279, 308, 422, 464, 543, 650, 696
MseI	TTAA	4 cut(s)	482, 561, 819, 927
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	613, 749
MunI	CAATTG	2 cut(s)	600, 863
MvaI	CCWGG	2 cut(s)	613, 749
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	176, 185, 205, 401
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	5 cut(s)	242, 336, 571, 719, 969
NlaIII	CATG	3 cut(s)	86, 218, 925
NmuCI	GTSAC	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	298, 410, 937
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	5 cut(s)	190, 207, 403, 488, 694
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	611, 747
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	611, 747
PspPI	GGNCC	2 cut(s)	431, 811
PsuI	RGATCY	1 cut(s)	719
PsyI	GACNNNGTC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	482, 561, 819, 927
SatI	GCNGC	5 cut(s)	189, 206, 402, 487, 693
Sau3AI	GATC	5 cut(s)	242, 336, 571, 719, 969
Sau96I	GGNCC	2 cut(s)	431, 811
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	613, 749
SduI	GDGCHC	2 cut(s)	620, 764
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	8 cut(s)	304, 327, 600, 709, 863, 908, 948, 979
SsiI	CCGC	2 cut(s)	188, 486
SspMI	CTAG	4 cut(s)	26, 398, 405, 468
StyD4I	CCNGG	2 cut(s)	611, 747
TaaI	ACNGT	5 cut(s)	57, 105, 260, 373, 418
TaqI	TCGA	1 cut(s)	491
TasI	AATT	8 cut(s)	304, 327, 600, 709, 863, 908, 948, 979
TauI	GCSGC	2 cut(s)	191, 489
TfiI	GAWTC	3 cut(s)	298, 410, 937
Tru1I	TTAA	4 cut(s)	482, 561, 819, 927
Tru9I	TTAA	4 cut(s)	482, 561, 819, 927
TscAI	CASTG	4 cut(s)	60, 376, 421, 443
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	3 cut(s)	205, 401, 692
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	513, 899
TspRI	CASTG	4 cut(s)	60, 376, 421, 443
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	1 cut(s)	722
VneI	GTGCAC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XspI	CTAG	4 cut(s)	26, 398, 405, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.