pycom02g11000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
7769159 .. 7771866
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11000.3

Sequence Viewer

Length: 1128 bp
ATGCAGCTTCTCTCTCTCTCTCTCTCTCTCCCCCCACAAAGTCCCTCAATAAATTTCATCAATCCAACCAAAGGATTCATCAAACCAAAGTCTTCAAATTTCAAGTCTTTTTCTCCAAGAAACCACATTATTATGGCCAACTCTTTGAGCTTCCTTCTAGCCCTTTCTCTTCTTGCATTTTCTCCACTATGTTTCTGTGACAAAACTCCTGGTGGGTATCTCTACCCACAGTTTTATGACCGCTCCTGCCCCAGAGCCAAAGAGATTGTCAAGTCTGTTGTTGCGAAAGCCGTTGCTAGGGAAACCCGAATGGCAGCTTCTTTGCTCAGGCTGCATTTCCATGACTGTTTCGTGAAGGGTTGCGATGCATCACTTCTGCTGGACAGCAGCCAGAACATAATCACCGAAAAGAGGTCTGTCCCGAACCAGAATTCAGCGCGAGGGTTCGAAGTGATTGACGAAATCAAGTCTGCATTGGAGAAGGAGTGCCCCAGCACGGTGTCTTGTGCTGACATTTTGGCTCTTGCTGCTAGAGACTCAACTGTCCTGACTGGTGGGCCAAACTGGGAGGTCCCACTGGGAAGAAGGGATTCAAGAGAAGCAAGTTTGAGTGGCTCCAACAGCAACATTCCTGCCCCAAACAACACATTCCAAACTATTCTCACCAAGTTCAAATTGAAAAAGCTCGACATTGTTGATCTTGTTGCACTATCTGGAAGCCACACCATTGGAAATGCCAGGTGCACCTCCTTCAGGCAGAGGCTCTACAACCAGTCGGGCAACGGCCTGGCTGACTTCACCCTCGACCAGTCCTACGCCGGTCAGCTTCGAACCAGGTGCCCGAGATCCGGCGGGGACCAGAACCTTTTCGTGATGGACTTTGTGAGCCCTACAAAGTTCGACAACAACTACTTCAAGAACCTGCTGGCCTCCAAGGGGCTTCTGAACTCGGACGAAGTTCTCGTCACGAAAAGTCAGGTGTCGAAGCAGTTGGTGCAGCAGTATGCAGAGAACAATGAGCTTTTCTTTAAGCAGTTTGCCAAGTCCATGGTTAAGATGGGGAATATTTCTCCGATTACGGGGTCGAGGGGAGAGATTAGGAAGAGCTGCAGGAAGGTTAACTCTTAA

Protein Analysis

376

Amino Acids

41.36

Weight (kDa)

9.52

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 930
AccB1I GGYRCC 1 cut(s) 837
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 439
AciI CCGC 2 cut(s) 241, 852
AclWI GGATC 1 cut(s) 840
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 52, 97, 430
AcuI CTGAAG 1 cut(s) 736
AfiI CCNNNNNNNGG 8 cut(s) 71, 297, 411, 496, 753, 848, 936, 1079
AgsI TTSAA 6 cut(s) 96, 103, 594, 673, 679, 916
AjnI CCWGG 4 cut(s) 208, 737, 786, 833
AluBI AGCT 7 cut(s) 7, 150, 317, 685, 826, 1021, 1107
AluI AGCT 7 cut(s) 7, 150, 317, 685, 826, 1021, 1107
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 1 cut(s) 528
Alw44I GTGCAC 1 cut(s) 742
AlwI GGATC 1 cut(s) 840
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 4 cut(s) 135, 557, 784, 927
ApaLI GTGCAC 1 cut(s) 742
ApeKI GCWGC 7 cut(s) 4, 314, 331, 387, 527, 997, 1107
ApoI RAATTY 3 cut(s) 52, 97, 430
ArsI GACNNNNNNTTYG 6 cut(s) 89, 121, 252, 284, 948, 980
Asp700I GAANNNNTTC 2 cut(s) 589, 866
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 3 cut(s) 557, 571, 856
AsuHPI GGTGA 3 cut(s) 394, 655, 790
AsuII TTCGAA 2 cut(s) 447, 829
AvaI CYCGRG 1 cut(s) 841
AvaII GGWCC 2 cut(s) 571, 856
BaeGI GKGCMC 3 cut(s) 491, 746, 842
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 837
BanII GRGCYC 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 7 cut(s) 16, 318, 326, 399, 514, 1009, 1094
BccI CCATC 2 cut(s) 868, 1051
BceAI ACGGC 2 cut(s) 275, 799
BcgI CGANNNNNNTGC 2 cut(s) 819, 853
BciT130I CCWGG 4 cut(s) 210, 739, 788, 835
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 3 cut(s) 158, 297, 531
BfmI CTRYAG 1 cut(s) 1108
BfuAI ACCTGC 1 cut(s) 930
BisI GCNGC 7 cut(s) 5, 315, 332, 388, 528, 998, 1108
BlsI GCNGC 7 cut(s) 6, 316, 333, 389, 529, 999, 1109
Bme1390I CCNGG 4 cut(s) 210, 739, 788, 835
Bme18I GGWCC 2 cut(s) 571, 856
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 3 cut(s) 557, 571, 856
BmiI GGNNCC 4 cut(s) 573, 616, 839, 857
BmrFI CCNGG 4 cut(s) 210, 739, 788, 835
BmrI ACTGGG 2 cut(s) 574, 587
BmsI GCATC 2 cut(s) 355, 377
BmuI ACTGGG 2 cut(s) 574, 587
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 2 cut(s) 447, 829
BsaJI CCNNGG 2 cut(s) 933, 1047
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 8 cut(s) 71, 297, 411, 496, 753, 848, 936, 1079
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 5 cut(s) 556, 569, 582, 772, 808
BseBI CCWGG 4 cut(s) 210, 739, 788, 835
BseDI CCNNGG 2 cut(s) 933, 1047
BseLI CCNNNNNNNGG 8 cut(s) 71, 297, 411, 496, 753, 848, 936, 1079
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 5 cut(s) 556, 569, 582, 772, 808
BseSI GKGCMC 3 cut(s) 491, 746, 842
BseXI GCAGC 7 cut(s) 16, 318, 326, 399, 514, 1009, 1094
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 1016
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 4 cut(s) 137, 559, 786, 929
BshNI GGYRCC 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 746
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 2 cut(s) 819, 849
BslFI GGGAC 4 cut(s) 27, 404, 557, 869
BslI CCNNNNNNNGG 8 cut(s) 71, 297, 411, 496, 753, 848, 936, 1079
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 4 cut(s) 27, 404, 557, 869
BsnI GGCC 4 cut(s) 137, 559, 786, 929
BsoBI CYCGRG 1 cut(s) 841
Bsp119I TTCGAA 2 cut(s) 447, 829
Bsp1286I GDGCHC 4 cut(s) 491, 746, 842, 890
Bsp143I GATC 2 cut(s) 697, 845
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 2 cut(s) 241, 852
BspANI GGCC 4 cut(s) 137, 559, 786, 929
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 573, 616, 839, 857
BspMAI CTGCAG 1 cut(s) 1112
BspMI ACCTGC 1 cut(s) 930
BspPI GGATC 1 cut(s) 840
BspQI GCTCTTC 1 cut(s) 1097
BspT104I TTCGAA 2 cut(s) 447, 829
BspT107I GGYRCC 1 cut(s) 837
BsrBI CCGCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 5 cut(s) 556, 569, 582, 772, 808
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 2 cut(s) 933, 1047
BssMI GATC 2 cut(s) 697, 845
BssT1I CCWWGG 2 cut(s) 933, 1047
Bst2UI CCWGG 4 cut(s) 210, 739, 788, 835
Bst4CI ACNGT 4 cut(s) 231, 347, 499, 544
Bst6I CTCTTC 2 cut(s) 174, 1097
BstAPI GCANNNNNTGC 1 cut(s) 994
BstBI TTCGAA 2 cut(s) 447, 829
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 1047
BstENI CCTNNNNNAGG 1 cut(s) 751
BstFNI CGCG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 2 cut(s) 700, 848
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 2 cut(s) 697, 845
BstMWI GCNNNNNNNGC 4 cut(s) 331, 527, 621, 994
BstNI CCWGG 4 cut(s) 210, 739, 788, 835
BstSCI CCNGG 4 cut(s) 208, 737, 786, 833
BstSFI CTRYAG 1 cut(s) 1108
BstSLI GKGCMC 3 cut(s) 491, 746, 842
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 7 cut(s) 16, 318, 326, 399, 514, 1009, 1094
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 845
BstXI CCANNNNNNTGG 2 cut(s) 728, 1048
BstYI RGATCY 1 cut(s) 845
BsuRI GGCC 4 cut(s) 137, 559, 786, 929
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 575
BveI ACCTGC 1 cut(s) 930
Cac8I GCNNGC 1 cut(s) 927
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 3 cut(s) 557, 571, 856
CsiI ACCWGGT 1 cut(s) 833
CviAII CATG 2 cut(s) 341, 1048
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 699, 847
DpnII GATC 2 cut(s) 697, 845
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 174, 1097
EarI CTCTTC 2 cut(s) 174, 1097
Eco130I CCWWGG 2 cut(s) 933, 1047
Eco24I GRGCYC 1 cut(s) 890
Eco47I GGWCC 2 cut(s) 571, 856
Eco57I CTGAAG 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 4 cut(s) 208, 737, 786, 833
EcoT14I CCWWGG 2 cut(s) 933, 1047
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 890
ErhI CCWWGG 2 cut(s) 933, 1047
FaeI CATG 2 cut(s) 344, 1051
FaiI YATR 7 cut(s) 134, 190, 237, 342, 398, 1005, 1049
FaqI GGGAC 4 cut(s) 27, 404, 557, 869
FatI CATG 2 cut(s) 340, 1047
FauI CCCGC 1 cut(s) 845
Fnu4HI GCNGC 7 cut(s) 5, 315, 332, 388, 528, 998, 1108
FriOI GRGCYC 1 cut(s) 890
Fsp4HI GCNGC 7 cut(s) 5, 315, 332, 388, 528, 998, 1108
FspBI CTAG 3 cut(s) 158, 297, 531
GlaI GCGC 1 cut(s) 438
GluI GCNGC 7 cut(s) 5, 315, 332, 388, 528, 998, 1108
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 4 cut(s) 137, 559, 786, 929
HapII CCGG 2 cut(s) 819, 849
HhaI GCGC 1 cut(s) 439
Hin1II CATG 2 cut(s) 344, 1051
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 3 cut(s) 75, 536, 590
HpaI GTTAAC 1 cut(s) 1120
HpaII CCGG 2 cut(s) 819, 849
HphI GGTGA 3 cut(s) 394, 655, 790
Hpy166II GTNNAC 2 cut(s) 744, 1120
Hpy188I TCNGA 3 cut(s) 945, 952, 1074
Hpy188III TCNNGA 8 cut(s) 352, 421, 547, 594, 714, 871, 916, 967
Hpy8I GTNNAC 2 cut(s) 744, 1120
HpyAV CCTTC 6 cut(s) 164, 349, 475, 579, 760, 1108
HpyCH4III ACNGT 4 cut(s) 231, 347, 499, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 527, 621, 994
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 2 cut(s) 344, 1051
HspAI GCGC 1 cut(s) 437
KspAI GTTAAC 1 cut(s) 1120
Kzo9I GATC 2 cut(s) 697, 845
LguI GCTCTTC 1 cut(s) 1097
LmnI GCTCC 2 cut(s) 248, 620
Lsp1109I GCAGC 7 cut(s) 16, 318, 326, 399, 514, 1009, 1094
LweI GCATC 2 cut(s) 355, 377
MabI ACCWGGT 1 cut(s) 833
MaeI CTAG 3 cut(s) 158, 297, 531
MaeIII GTNAC 2 cut(s) 197, 964
MalI GATC 2 cut(s) 699, 847
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 697, 845
MboII GAAGA 4 cut(s) 84, 161, 594, 1114
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 4 cut(s) 491, 746, 842, 890
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 4 cut(s) 52, 97, 430, 674
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 89, 642
MnlI CCTC 9 cut(s) 55, 405, 434, 562, 753, 757, 812, 940, 1080
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 370
MroXI GAANNNNTTC 2 cut(s) 589, 866
MscI TGGCCA 1 cut(s) 137
MseI TTAA 4 cut(s) 1029, 1053, 1119, 1126
MslI CAYNNNNRTG 2 cut(s) 131, 339
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 2 cut(s) 819, 849
MspR9I CCNGG 4 cut(s) 210, 739, 788, 835
MvaI CCWGG 4 cut(s) 210, 739, 788, 835
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 4 cut(s) 331, 527, 621, 994
NcoI CCATGG 1 cut(s) 1047
NdeII GATC 2 cut(s) 697, 845
NlaIII CATG 2 cut(s) 344, 1051
NlaIV GGNNCC 4 cut(s) 573, 616, 839, 857
NmuCI GTSAC 2 cut(s) 197, 964
NsiI ATGCAT 1 cut(s) 370
NspV TTCGAA 2 cut(s) 447, 829
PciSI GCTCTTC 1 cut(s) 1097
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PdmI GAANNNNTTC 2 cut(s) 589, 866
PfeI GAWTC 2 cut(s) 75, 590
PkrI GCNGC 7 cut(s) 6, 316, 333, 389, 529, 999, 1109
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 4 cut(s) 208, 737, 786, 833
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 4 cut(s) 208, 737, 786, 833
PspN4I GGNNCC 4 cut(s) 573, 616, 839, 857
PspPI GGNCC 3 cut(s) 557, 571, 856
PspPPI RGGWCCY 1 cut(s) 571
PstI CTGCAG 1 cut(s) 1112
PsuI RGATCY 1 cut(s) 845
RseI CAYNNNNRTG 2 cut(s) 131, 339
SapI GCTCTTC 1 cut(s) 1097
SaqAI TTAA 4 cut(s) 1029, 1053, 1119, 1126
SatI GCNGC 7 cut(s) 5, 315, 332, 388, 528, 998, 1108
Sau3AI GATC 2 cut(s) 697, 845
Sau96I GGNCC 3 cut(s) 557, 571, 856
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 210, 739, 788, 835
SduI GDGCHC 4 cut(s) 491, 746, 842, 890
SexAI ACCWGGT 1 cut(s) 833
SfaNI GCATC 2 cut(s) 355, 377
SfcI CTRYAG 1 cut(s) 1108
SfuI TTCGAA 2 cut(s) 447, 829
SinI GGWCC 2 cut(s) 571, 856
SmiMI CAYNNNNRTG 2 cut(s) 131, 339
Sse9I AATT 4 cut(s) 52, 97, 430, 674
SsiI CCGC 2 cut(s) 241, 852
SspI AATATT 1 cut(s) 1066
SspMI CTAG 3 cut(s) 158, 297, 531
StyD4I CCNGG 4 cut(s) 208, 737, 786, 833
StyI CCWWGG 2 cut(s) 933, 1047
TaaI ACNGT 4 cut(s) 231, 347, 499, 544
TaqI TCGA 7 cut(s) 447, 687, 804, 829, 900, 983, 1085
TasI AATT 4 cut(s) 52, 97, 430, 674
TfiI GAWTC 2 cut(s) 75, 590
Tru1I TTAA 4 cut(s) 1029, 1053, 1119, 1126
Tru9I TTAA 4 cut(s) 1029, 1053, 1119, 1126
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 197, 964
TseI GCWGC 7 cut(s) 4, 314, 331, 387, 527, 997, 1107
Tsp45I GTSAC 2 cut(s) 197, 964
TspDTI ATGAA 2 cut(s) 46, 67
TspRI CASTG 1 cut(s) 582
VneI GTGCAC 1 cut(s) 742
VpaK11BI GGWCC 2 cut(s) 571, 856
XagI CCTNNNNNAGG 1 cut(s) 751
XapI RAATTY 3 cut(s) 52, 97, 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmnI GAANNNNTTC 2 cut(s) 589, 866
XspI CTAG 3 cut(s) 158, 297, 531
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.