Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21319998 .. 21322083

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1252300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCATCAATCCACCCAAAGGATTCAGCAAACCAAAATATTCAAATTTCAAGTCTTTCTTCTTCTCCAAGAAACTGCATCATGGCTCAGTCTATGAGCTTCCTTTTAGCCCTTTCTCTTCTTGCATTATTTCCACCATGTTTCTGTGACAAAACTCCTGGTGGGTATCTCTACGCACAGTTCTATGACCACTCCTGCCCCAGAGCAAAACAGATTGTCAAGTCCGTTGTTGCAAAAGCCGTTGCAAGAGAAGCCCGAATGGCGGCTTCTTTGCTCAGACTGCATTTCCATGACTGTTTCGTGAAGGGTTGTGATGCATCAATTCTGCTGGACAGTAGCCAGAACATAATCTCCGAAAAGAGGTCTGTCCCGAACCAGAATTCAGCGCGAGGGTTCGAAGTGATCGACGAAATCAAGTCTGCATTGGAGAAGGAGTGCCCCAGCACTGTGTCTTGTGCTGACATTTTGGCTCTTGCTGCTAGAGACTCAACTGTTCTGACTGGGGGGCCAAGCTGGGAGGTGCCACTAGGAAGAAGAGATTCAATTGGAGCAAGTTTGAGTGGCTCCAACAACAACATCCCAGCCCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGTTGAAAAAGCTCAACATTATTGATCTTGTGGCACTGTCTGGAAGCCACACCATTGGAAATGCCAGGTGCACCACCTTCAGGCAGAGGCTGTACAACCAGTCCGGCAATGGCCTGGCCGATTCCACTCTCGACCAGTCCTACGCCGCCCAGCTTCGAACCCGGTGCCCGAGATCCGGCGGGGACCAGAACCTGTTCTTCCTGGACTTTGTGAGCCCCACAAAGTTCGACAACAGCTACTTCAAGAACTTGCTGGCCTCCAAGGGACTTCTGAACTCGGACGAAGTTCTGGTCACGAAAAGTGAGGTGTCGAAGAAGTTGGTGCGGCAGTATGCAGAGAACAACGAGCTTTTCTTTGAGCAGTTTGCGAAGTCCATGGTTAAGATGGGGAATCTTTCTCCGCTTACTGGGTCGACGGGAGAGATTAGGAAGAGGTGCAGGAAAGTTAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

359

Amino Acids

39.23

Weight (kDa)

9.28

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	73 - 321	4.8e-85	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	520, 786
AccI	GTMKAC	1 cut(s)	1034
AccII	CGCG	1 cut(s)	388
AciI	CCGC	5 cut(s)	263, 768, 801, 946, 1022
AclWI	GGATC	1 cut(s)	789
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	45, 379
AcuI	CTGAAG	1 cut(s)	685
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	6 cut(s)	19, 262, 360, 702, 797, 1028
AgsI	TTSAA	6 cut(s)	44, 51, 543, 622, 628, 865
AjnI	CCWGG	4 cut(s)	157, 686, 735, 822
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	99, 513, 634, 775, 858, 970
AluI	AGCT	6 cut(s)	99, 513, 634, 775, 858, 970
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	477
Alw44I	GTGCAC	1 cut(s)	691
AlwI	GGATC	1 cut(s)	789
AlwNI	CAGNNNCTG	2 cut(s)	712, 814
Ama87I	CYCGRG	1 cut(s)	790
AoxI	GGCC	4 cut(s)	506, 733, 738, 876
ApaLI	GTGCAC	1 cut(s)	691
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	45, 379
ArsI	GACNNNNNNTTYG	4 cut(s)	37, 69, 897, 929
Asp700I	GAANNNNTTC	2 cut(s)	538, 815
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	506, 805
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	1 cut(s)	604
AsuII	TTCGAA	2 cut(s)	396, 778
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	3 cut(s)	440, 695, 791
BanI	GGYRCC	2 cut(s)	520, 786
BanII	GRGCYC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	1000
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	768, 802
BciT130I	CCWGG	4 cut(s)	159, 688, 737, 824
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	2 cut(s)	480, 527
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	4 cut(s)	264, 477, 768, 947
BlsI	GCNGC	4 cut(s)	265, 478, 769, 948
Bme1390I	CCNGG	5 cut(s)	159, 688, 737, 784, 824
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	506, 805
BmiI	GGNNCC	5 cut(s)	507, 522, 565, 788, 806
BmrFI	CCNGG	5 cut(s)	159, 688, 737, 784, 824
BmrI	ACTGGG	2 cut(s)	510, 1038
BmsI	GCATC	3 cut(s)	87, 304, 326
BmuI	ACTGGG	2 cut(s)	510, 1038
Bpu14I	TTCGAA	2 cut(s)	396, 778
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	882, 996
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 419, 449
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 262, 360, 702, 797, 1028
Bse1I	ACTGG	4 cut(s)	505, 721, 757, 1033
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	4 cut(s)	159, 688, 737, 824
BseDI	CCNNGG	2 cut(s)	882, 996
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	6 cut(s)	19, 262, 360, 702, 797, 1028
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	2 cut(s)	101, 289
BseNI	ACTGG	4 cut(s)	505, 721, 757, 1033
BseSI	GKGCMC	3 cut(s)	440, 695, 791
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	4 cut(s)	440, 513, 580, 771
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	4 cut(s)	508, 735, 740, 878
BshNI	GGYRCC	2 cut(s)	520, 786
BsiHKAI	GWGCWC	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	3 cut(s)	726, 784, 798
BslFI	GGGAC	3 cut(s)	353, 818, 900
BslI	CCNNNNNNNGG	6 cut(s)	19, 262, 360, 702, 797, 1028
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	3 cut(s)	353, 818, 900
BsnI	GGCC	4 cut(s)	508, 735, 740, 878
BsoBI	CYCGRG	1 cut(s)	790
Bsp119I	TTCGAA	2 cut(s)	396, 778
Bsp1286I	GDGCHC	4 cut(s)	440, 695, 791, 839
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	3 cut(s)	402, 646, 794
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	5 cut(s)	263, 768, 801, 946, 1022
BspANI	GGCC	4 cut(s)	508, 735, 740, 878
BspCNI	CTCAG	2 cut(s)	100, 288
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	5 cut(s)	507, 522, 565, 788, 806
BspPI	GGATC	1 cut(s)	789
BspT104I	TTCGAA	2 cut(s)	396, 778
BspT107I	GGYRCC	2 cut(s)	520, 786
BsrDI	GCAATG	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	4 cut(s)	505, 721, 757, 1033
BssECI	CCNNGG	2 cut(s)	882, 996
BssMI	GATC	3 cut(s)	402, 646, 794
BssT1I	CCWWGG	2 cut(s)	882, 996
Bst2UI	CCWGG	4 cut(s)	159, 688, 737, 824
Bst4CI	ACNGT	6 cut(s)	180, 296, 335, 448, 493, 660
Bst6I	CTCTTC	3 cut(s)	123, 529, 1046
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	2 cut(s)	396, 778
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	3 cut(s)	87, 275, 1074
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	405, 649, 797
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	3 cut(s)	402, 646, 794
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 260, 280, 476
BstNI	CCWGG	4 cut(s)	159, 688, 737, 824
BstSCI	CCNGG	5 cut(s)	157, 686, 735, 782, 822
BstSLI	GKGCMC	3 cut(s)	440, 695, 791
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	794
BsuRI	GGCC	4 cut(s)	508, 735, 740, 878
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	444, 656
Cac8I	GCNNGC	1 cut(s)	876
CaiI	CAGNNNCTG	2 cut(s)	712, 814
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	506, 805
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	4 cut(s)	82, 138, 290, 997
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	87, 275, 1074
DpnI	GATC	3 cut(s)	404, 648, 796
DpnII	GATC	3 cut(s)	402, 646, 794
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	3 cut(s)	123, 529, 1046
EarI	CTCTTC	3 cut(s)	123, 529, 1046
Eco130I	CCWWGG	2 cut(s)	882, 996
Eco24I	GRGCYC	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	685
Eco88I	CYCGRG	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	4 cut(s)	157, 686, 735, 822
EcoT14I	CCWWGG	2 cut(s)	882, 996
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	2 cut(s)	882, 996
FaeI	CATG	4 cut(s)	85, 141, 293, 1000
FaiI	YATR	8 cut(s)	83, 95, 139, 186, 291, 347, 954, 998
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	3 cut(s)	353, 818, 900
FatI	CATG	4 cut(s)	81, 137, 289, 996
FauI	CCCGC	1 cut(s)	794
FblI	GTMKAC	1 cut(s)	1034
Fnu4HI	GCNGC	4 cut(s)	264, 477, 768, 947
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	4 cut(s)	264, 477, 768, 947
FspBI	CTAG	2 cut(s)	480, 527
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	4 cut(s)	264, 477, 768, 947
GsaI	CCCAGC	4 cut(s)	444, 517, 584, 775
HaeIII	GGCC	4 cut(s)	508, 735, 740, 878
HapII	CCGG	3 cut(s)	726, 784, 798
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	85, 141, 293, 1000
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	2 cut(s)	1035, 1069
HindII	GTYRAC	2 cut(s)	1035, 1069
HinfI	GANTC	5 cut(s)	23, 485, 539, 743, 1012
HpaI	GTTAAC	1 cut(s)	1069
HpaII	CCGG	3 cut(s)	726, 784, 798
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	3 cut(s)	693, 1035, 1069
Hpy188I	TCNGA	5 cut(s)	278, 355, 498, 894, 901
Hpy188III	TCNNGA	6 cut(s)	301, 370, 663, 752, 865, 916
Hpy8I	GTNNAC	3 cut(s)	693, 1035, 1069
Hpy99I	CGWCG	2 cut(s)	410, 1039
HpyAV	CCTTC	3 cut(s)	298, 424, 709
HpyCH4III	ACNGT	6 cut(s)	180, 296, 335, 448, 493, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 260, 280, 476
HpyF3I	CTNAG	3 cut(s)	87, 275, 1074
Hsp92II	CATG	4 cut(s)	85, 141, 293, 1000
HspAI	GCGC	1 cut(s)	386
KspAI	GTTAAC	1 cut(s)	1069
Kzo9I	GATC	3 cut(s)	402, 646, 794
LmnI	GCTCC	2 cut(s)	548, 569
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	87, 304, 326
MaeI	CTAG	2 cut(s)	480, 527
MaeIII	GTNAC	2 cut(s)	146, 913
MalI	GATC	3 cut(s)	404, 648, 796
MboI	GATC	3 cut(s)	402, 646, 794
MboII	GAAGA	8 cut(s)	51, 54, 110, 543, 546, 811, 946, 1063
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	4 cut(s)	440, 695, 791, 839
MluCI	AATT	4 cut(s)	45, 321, 379, 543
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	7 cut(s)	354, 383, 511, 702, 889, 919, 1047
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	2 cut(s)	538, 815
MseI	TTAA	2 cut(s)	1002, 1068
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	3 cut(s)	726, 784, 798
MspR9I	CCNGG	5 cut(s)	159, 688, 737, 784, 824
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	4 cut(s)	159, 688, 737, 824
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	4 cut(s)	251, 260, 280, 476
NciI	CCSGG	1 cut(s)	784
NcoI	CCATGG	1 cut(s)	996
NdeII	GATC	3 cut(s)	402, 646, 794
NlaIII	CATG	4 cut(s)	85, 141, 293, 1000
NlaIV	GGNNCC	5 cut(s)	507, 522, 565, 788, 806
NmuCI	GTSAC	2 cut(s)	146, 913
NsiI	ATGCAT	1 cut(s)	319
NspV	TTCGAA	2 cut(s)	396, 778
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdmI	GAANNNNTTC	2 cut(s)	538, 815
PfeI	GAWTC	4 cut(s)	23, 539, 743, 1012
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	4 cut(s)	265, 478, 769, 948
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	4 cut(s)	157, 686, 735, 822
PspFI	CCCAGC	4 cut(s)	440, 513, 580, 771
PspGI	CCWGG	4 cut(s)	157, 686, 735, 822
PspN4I	GGNNCC	5 cut(s)	507, 522, 565, 788, 806
PspPI	GGNCC	2 cut(s)	506, 805
PstNI	CAGNNNCTG	2 cut(s)	712, 814
PsuI	RGATCY	1 cut(s)	794
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	1033
SaqAI	TTAA	2 cut(s)	1002, 1068
SatI	GCNGC	4 cut(s)	264, 477, 768, 947
Sau3AI	GATC	3 cut(s)	402, 646, 794
Sau96I	GGNCC	2 cut(s)	506, 805
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	5 cut(s)	159, 688, 737, 784, 824
SduI	GDGCHC	4 cut(s)	440, 695, 791, 839
SfaNI	GCATC	3 cut(s)	87, 304, 326
SfuI	TTCGAA	2 cut(s)	396, 778
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	4 cut(s)	45, 321, 379, 543
SsiI	CCGC	5 cut(s)	263, 768, 801, 946, 1022
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	2 cut(s)	480, 527
StyD4I	CCNGG	5 cut(s)	157, 686, 735, 782, 822
StyI	CCWWGG	2 cut(s)	882, 996
TaaI	ACNGT	6 cut(s)	180, 296, 335, 448, 493, 660
TaqI	TCGA	7 cut(s)	396, 405, 753, 778, 849, 932, 1034
TasI	AATT	4 cut(s)	45, 321, 379, 543
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	3 cut(s)	266, 770, 949
TfiI	GAWTC	4 cut(s)	23, 539, 743, 1012
Tru1I	TTAA	2 cut(s)	1002, 1068
Tru9I	TTAA	2 cut(s)	1002, 1068
TscAI	CASTG	2 cut(s)	451, 663
TseFI	GTSAC	2 cut(s)	146, 913
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	2 cut(s)	146, 913
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	451, 663
VneI	GTGCAC	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	2 cut(s)	45, 379
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 1003
XmiI	GTMKAC	1 cut(s)	1034
XmnI	GAANNNNTTC	2 cut(s)	538, 815
XspI	CTAG	2 cut(s)	480, 527
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.