Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Reverse (-)

6860970 .. 6863057

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTTCCTCACTCTCTTTCATTGTGTACAAACTCTCCTCTATAAATACCTCAAGTATATACAACCTATCAATCATCAAAGCAAAGCCTTACAACTTTTCTTCCTCCTACACAATTTCAACTTGCCTTGGCAGAACATTATTATGGCCAAGTCTTTGCTCTTCCTCCTGTCTCTTTCTCTCCTTGCATTTGCTCCACTTTGTTTCTGTCACACCAATAATTACAATCATGGTGGCTATCTCTACCCACAGTTCTATGATCACTCTTGCCCCAAAGCTCAACAGATTGTGCAGTCGATTGTTTCCAAGGCTGTTGCAAGAGAGGCGAGAATGGCGGCTTCTTTGCTTAGGCTGCACTTCCATGACTGCTTTGTCCAGGGTTGTGATGCATCAATCCTTTTGGACAGTAGCAAGAACATAATCACCGAGAAGACGTCTAACCCGAATCGGAATTCAATCCGGGGGCTTGAAGTAATTGATGAGATCAAAGCTGCGATAGAAAAGGAATGTCCCAGCACTGTGTCTTGTGCTGACATTGTGGCTCTAGCTGCTAGAGACTCCACTGTTTTAGCTGGAGGACCACACTGGGAAGTCCCACTAGGAAGAAGAGACTCCAAAAGCGCGAGTTTAAGCGGCTCGAACAATGACATCCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGGCAAAAGCTTAACATTGTTGATCTTGTTGCACTATCTGGAAGTCACACAATTGGAAATGCCAGATGCACCACTTTCAGACAGAGACTTTACAACCAAACTGGAAGAGGGCTTGCTGACTTCACTCTTGACCAGTCACTTGCTGCAAGTTTGAGGAACAATTGCCCAAGATCTGGTGGAGACCAGAACCTGTTCTTCCTGGACTTTGTGAGTCCGACAAAGTTTGACAACAGCTACTTCAAGAACTTGTTGGCTTACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCAAAGCAATTGGTTCAGCAATATGCAGAGAACAACCAGCTTTTCCTAGAGCAATTTGCCAAGTCCATGGTCAAGATGGGGAATCTTTCACCAATTACAGGTTCAAGGGGAGAGATCAGAAAGAATTGCAGGATGGTCAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

382

Amino Acids

42.66

Weight (kDa)

9.25

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	96 - 344	3e-85	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AatII	GACGTC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccII	CGCG	1 cut(s)	620
AciI	CCGC	2 cut(s)	332, 630
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	866, 1097
AgsI	TTSAA	6 cut(s)	118, 453, 467, 691, 934, 1104
AjnI	CCWGG	2 cut(s)	372, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	1084, 1116
AluBI	AGCT	7 cut(s)	275, 488, 545, 569, 703, 927, 1039
AluI	AGCT	7 cut(s)	275, 488, 545, 569, 703, 927, 1039
Alw26I	GTCTC	5 cut(s)	174, 546, 600, 772, 867
AlwNI	CAGNNNCTG	1 cut(s)	883
AoxI	GGCC	2 cut(s)	144, 955
ApeKI	GCWGC	4 cut(s)	349, 488, 545, 836
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	575, 955
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	412, 673, 1080
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	4 cut(s)	336, 475, 532, 823
BccI	CCATC	2 cut(s)	1069, 1126
BciT130I	CCWGG	2 cut(s)	374, 893
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	5 cut(s)	174, 546, 600, 772, 867
BfaI	CTAG	4 cut(s)	542, 549, 596, 1046
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	6 cut(s)	333, 350, 489, 546, 631, 837
BlsI	GCNGC	6 cut(s)	334, 351, 490, 547, 632, 838
Bme1390I	CCNGG	3 cut(s)	374, 458, 893
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	575, 955
BmrFI	CCNGG	3 cut(s)	374, 458, 893
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	3 cut(s)	373, 395, 749
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	5 cut(s)	125, 303, 373, 457, 1065
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	866, 1097
Bse1I	ACTGG	3 cut(s)	587, 799, 826
BseBI	CCWGG	2 cut(s)	374, 893
BseDI	CCNNGG	5 cut(s)	125, 303, 373, 457, 1065
BseGI	GGATG	2 cut(s)	645, 1137
BseLI	CCNNNNNNNGG	2 cut(s)	866, 1097
BseNI	ACTGG	3 cut(s)	587, 799, 826
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	336, 475, 532, 823
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	2 cut(s)	308, 335
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	146, 957
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	2 cut(s)	492, 575
BslI	CCNNNNNNNGG	2 cut(s)	866, 1097
BsmAI	GTCTC	5 cut(s)	174, 546, 600, 772, 867
BsmFI	GGGAC	2 cut(s)	492, 575
BsnI	GGCC	2 cut(s)	146, 957
Bso31I	GGTCTC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	256, 480, 715, 863, 1113
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	2 cut(s)	332, 630
BspANI	GGCC	2 cut(s)	146, 957
BspFNI	CGCG	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	3 cut(s)	587, 799, 826
BssECI	CCNNGG	5 cut(s)	125, 303, 373, 457, 1065
BssMI	GATC	5 cut(s)	256, 480, 715, 863, 1113
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	3 cut(s)	125, 303, 1065
Bst2UI	CCWGG	2 cut(s)	374, 893
Bst4CI	ACNGT	4 cut(s)	249, 404, 517, 562
Bst6I	CTCTTC	3 cut(s)	164, 598, 793
BstACI	GRCGYC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	807, 959
BstDEI	CTNAG	1 cut(s)	344
BstDSI	CCRYGG	1 cut(s)	1065
BstF5I	GGATG	2 cut(s)	645, 1137
BstFNI	CGCG	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	5 cut(s)	259, 483, 718, 866, 1116
BstMAI	GTCTC	5 cut(s)	174, 546, 600, 772, 867
BstMBI	GATC	5 cut(s)	256, 480, 715, 863, 1113
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 329, 349, 545
BstNI	CCWGG	2 cut(s)	374, 893
BstSCI	CCNGG	3 cut(s)	372, 456, 891
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	336, 475, 532, 823
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	863
BstXI	CCANNNNNNTGG	1 cut(s)	1066
BstYI	RGATCY	1 cut(s)	863
BsuRI	GGCC	2 cut(s)	146, 957
BtgI	CCRYGG	1 cut(s)	1065
BtsCI	GGATG	2 cut(s)	645, 1137
BtsIMutI	CAGTG	3 cut(s)	513, 558, 580
Cac8I	GCNNGC	2 cut(s)	807, 959
CaiI	CAGNNNCTG	1 cut(s)	883
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	575, 955
Csp6I	GTAC	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	3 cut(s)	227, 359, 1066
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	5 cut(s)	258, 482, 717, 865, 1115
DpnII	GATC	5 cut(s)	256, 480, 715, 863, 1113
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	3 cut(s)	164, 598, 793
EarI	CTCTTC	3 cut(s)	164, 598, 793
Eco130I	CCWWGG	3 cut(s)	125, 303, 1065
Eco31I	GGTCTC	1 cut(s)	867
Eco47I	GGWCC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	372, 891
EcoT14I	CCWWGG	3 cut(s)	125, 303, 1065
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	3 cut(s)	125, 303, 1065
FaeI	CATG	3 cut(s)	230, 362, 1069
FaqI	GGGAC	2 cut(s)	492, 575
FatI	CATG	3 cut(s)	226, 358, 1065
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	6 cut(s)	333, 350, 489, 546, 631, 837
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	6 cut(s)	333, 350, 489, 546, 631, 837
FspBI	CTAG	4 cut(s)	542, 549, 596, 1046
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	6 cut(s)	333, 350, 489, 546, 631, 837
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	2 cut(s)	146, 957
HapII	CCGG	1 cut(s)	457
HhaI	GCGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	3 cut(s)	230, 362, 1069
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	5 cut(s)	442, 554, 608, 904, 1081
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	3 cut(s)	412, 673, 1080
Hpy166II	GTNNAC	2 cut(s)	26, 1138
Hpy188I	TCNGA	5 cut(s)	447, 773, 909, 970, 1118
Hpy188III	TCNNGA	6 cut(s)	691, 732, 821, 934, 1072, 1143
Hpy8I	GTNNAC	2 cut(s)	26, 1138
HpyCH4III	ACNGT	4 cut(s)	249, 404, 517, 562
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 329, 349, 545
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	3 cut(s)	230, 362, 1069
HspAI	GCGC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	256, 480, 715, 863, 1113
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	196, 658
Lsp1109I	GCAGC	4 cut(s)	336, 475, 532, 823
LweI	GCATC	3 cut(s)	373, 395, 749
MaeI	CTAG	4 cut(s)	542, 549, 596, 1046
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	4 cut(s)	206, 737, 828, 982
MalI	GATC	5 cut(s)	258, 482, 717, 865, 1115
MboI	GATC	5 cut(s)	256, 480, 715, 863, 1113
MboII	GAAGA	7 cut(s)	91, 151, 439, 612, 615, 810, 880
MfeI	CAATTG	3 cut(s)	744, 853, 1007
MflI	RGATCY	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	3 cut(s)	548, 602, 913
MmeI	TCCRAC	1 cut(s)	932
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	626, 705, 963
MslI	CAYNNNNRTG	2 cut(s)	140, 357
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	3 cut(s)	374, 458, 893
MunI	CAATTG	3 cut(s)	744, 853, 1007
MvaI	CCWGG	2 cut(s)	374, 893
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	4 cut(s)	320, 329, 349, 545
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	1065
NdeII	GATC	5 cut(s)	256, 480, 715, 863, 1113
NlaIII	CATG	3 cut(s)	230, 362, 1069
NmuCI	GTSAC	3 cut(s)	206, 737, 828
NsiI	ATGCAT	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	442, 1081
PflMI	CCANNNNNTGG	1 cut(s)	866
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	6 cut(s)	334, 351, 490, 547, 632, 838
PleI	GAGTC	3 cut(s)	548, 602, 912
PpsI	GAGTC	3 cut(s)	548, 602, 912
Psp6I	CCWGG	2 cut(s)	372, 891
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	372, 891
PspPI	GGNCC	2 cut(s)	575, 955
PstNI	CAGNNNCTG	1 cut(s)	883
PsuI	RGATCY	1 cut(s)	863
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	140, 357
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	626, 705, 963
SatI	GCNGC	6 cut(s)	333, 350, 489, 546, 631, 837
Sau3AI	GATC	5 cut(s)	256, 480, 715, 863, 1113
Sau96I	GGNCC	2 cut(s)	575, 955
SchI	GAGTC	3 cut(s)	548, 602, 913
ScrFI	CCNGG	3 cut(s)	374, 458, 893
SfaNI	GCATC	3 cut(s)	373, 395, 749
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	140, 357
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	2 cut(s)	332, 630
SspMI	CTAG	4 cut(s)	542, 549, 596, 1046
StyD4I	CCNGG	3 cut(s)	372, 456, 891
StyI	CCWWGG	3 cut(s)	125, 303, 1065
TaaI	ACNGT	4 cut(s)	249, 404, 517, 562
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	293, 635
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	335, 633
TfiI	GAWTC	2 cut(s)	442, 1081
Tru1I	TTAA	3 cut(s)	626, 705, 963
Tru9I	TTAA	3 cut(s)	626, 705, 963
TscAI	CASTG	3 cut(s)	520, 565, 587
TseFI	GTSAC	3 cut(s)	206, 737, 828
TseI	GCWGC	4 cut(s)	349, 488, 545, 836
Tsp45I	GTSAC	3 cut(s)	206, 737, 828
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	3 cut(s)	520, 565, 587
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	4 cut(s)	542, 549, 596, 1046
ZraI	GACGTC	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.