Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Reverse (-)

11712489 .. 11715361

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCCAAGTCTTTGCTCTTCCTTCTAGCTCTTTTTCTCCTTGCCTTTGCTCCACTTGGTTTCTGTTACAACAATTACAATTATGGTGGCTATCTCTACCCACAGTTCTATGACCACTCTTGCCCCAAAGCTCAACAGATTGTGCAGTCCATTGTTGCAAAGGCTGTTGCAAGAGAAGCAAGAATGGCGGCTTCTTTGCTTAGGCTGCACTTCCATGACTGCTTTGTAAAGGGTTGTGATGGATCAATCCTTTTGGACAGTAGCAAGAACATAATCACCGAGAAGAGGTCTAACCCGAATCTGAATTCAATCCGAGGGTTTGAAGTAATTGATGAGATCAAATCTGCGATAGAGAAGGAGTGTCCCAGCACTGTGTCTTGTGCTGACATTGTGGCTCTAGCTGCTAGAGACTCCACTGTTTTAGCTGGAGGACCACACTGGGAAGTCCCACTAGGAAGAAGAGACTCTAGAGGCGCGAGTTTAAGCGGCTCGAACAATGAAATCCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGGCAAAAGCTTAACATTGTTGATCTTGTTGCACTATCTGGAAGTCACACAATTGGAAATGCCAGGTGCACCACTTTTAGACAGAGACTTTACAACCAAACAGGAAGAGGGCTTGCTGACTTCACTCTTGACCAGTCATATGCTGCCAGTTTGAGGAACAATTGCCCAAGATCTGGTGGAGACCAAAACCTGTTCTTCCTGGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGAACTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAGAGAGTGAAGTAGCCAAGCAATTGGTTCAGCAATATGCAGTGAACAACGAGCTTTTCCTTGAGCAATTTGCCAAGTCCATGATTAAGATGGGGAATCTTTCACCAATTACAGGTTCAAGGGGAGAGATAAGAAAGAATTGCAGGAAGCTTTTATATCAGCCAGAGATGTACTCTTCTTTGGTTATTCTCATTGATAAAGAACTTGGCGGTCTCGACCCACACTTCTATGACAACAATTGCCCACAAGCTCAAGAGATTGTAAAGTTCGTAGTTGCCGAGGCTGCTGCAATAGATGGAAGAATGCCTGCTTCTTTGCTCAGGCTGCATTTCCATGACTGCTTTGTACAGGGTTGTGATGGATCAGTTCTGCTGAACAGTACTGACAGATTCATCACCGAGCAGAATTCCATCCCGAAATATAAATCAATTCGATGGTTGGAAGCAATCGATGAGATCAAATCTGCATTAGAGGAAGAGTGCCCCAACACAGTGTCCTGTGCTGACATTTTGGCTATGGTTGCTAAATACTCGGTTGATGTAGTAGGTTCTAGCTACATTTCAGATCAGCTGGACGACCAAACTGGGAAGTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

480

Amino Acids

53.17

Weight (kDa)

6.52

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	48 - 295	2.5e-85	Peroxidase
peroxidase	PF00141	371 - 465	5.4e-27	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccII	CGCG	1 cut(s)	476
AciI	CCGC	3 cut(s)	188, 486, 1050
AclWI	GGATC	2 cut(s)	250, 1210
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	304, 1246
AfaI	GTAC	3 cut(s)	1013, 1188, 1222
AfiI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
AgsI	TTSAA	5 cut(s)	309, 323, 547, 790, 960
AjnI	CCWGG	2 cut(s)	611, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	940, 972
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	5 cut(s)	402, 456, 628, 723, 1058
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	250, 1210
AoxI	GGCC	2 cut(s)	3, 811
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	6 cut(s)	205, 401, 692, 1124, 1127, 1165
ApoI	RAATTY	2 cut(s)	304, 1246
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	431, 811
AsuHPI	GGTGA	4 cut(s)	268, 529, 936, 1228
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	2 cut(s)	620, 1325
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	6 cut(s)	192, 388, 679, 1111, 1114, 1152
BccI	CCATC	6 cut(s)	233, 925, 1130, 1193, 1259, 1269
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BciT130I	CCWGG	2 cut(s)	613, 749
BcoDI	GTCTC	5 cut(s)	402, 456, 628, 723, 1058
BfaI	CTAG	6 cut(s)	26, 398, 405, 452, 468, 1392
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	8 cut(s)	189, 206, 402, 487, 693, 1125, 1128, 1166
BlsI	GCNGC	8 cut(s)	190, 207, 403, 488, 694, 1126, 1129, 1167
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	2 cut(s)	613, 749
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	431, 811
BmrFI	CCNGG	2 cut(s)	613, 749
BmrI	ACTGGG	2 cut(s)	448, 1434
BmuI	ACTGGG	2 cut(s)	448, 1434
BplI	GAGNNNNNCTC	2 cut(s)	998, 1030
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	200, 1160
BpuEI	CTTGAG	2 cut(s)	923, 1077
Bsa29I	ATCGAT	1 cut(s)	1290
BsaI	GGTCTC	2 cut(s)	723, 1058
BsaJI	CCNNGG	2 cut(s)	313, 1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
Bse1I	ACTGG	4 cut(s)	443, 682, 696, 1429
BseBI	CCWGG	2 cut(s)	613, 749
BseCI	ATCGAT	1 cut(s)	1290
BseDI	CCNNGG	2 cut(s)	313, 1119
BseGI	GGATG	1 cut(s)	1251
BseLI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BseMII	CTCAG	1 cut(s)	1174
BseNI	ACTGG	4 cut(s)	443, 682, 696, 1429
BseSI	GKGCMC	2 cut(s)	620, 1325
BseXI	GCAGC	6 cut(s)	192, 388, 679, 1111, 1114, 1152
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	164, 191
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	5, 813
BshVI	ATCGAT	1 cut(s)	1290
BsiHKAI	GWGCWC	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	348, 431
BslI	CCNNNNNNNGG	4 cut(s)	285, 702, 722, 953
BsmAI	GTCTC	5 cut(s)	402, 456, 628, 723, 1058
BsmFI	GGGAC	2 cut(s)	348, 431
BsmI	GAATGC	1 cut(s)	1149
BsnI	GGCC	2 cut(s)	5, 813
Bso31I	GGTCTC	2 cut(s)	723, 1058
Bsp1286I	GDGCHC	3 cut(s)	620, 764, 1325
Bsp1407I	TGTACA	1 cut(s)	1186
Bsp143I	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
BspACI	CCGC	3 cut(s)	188, 486, 1050
BspANI	GGCC	2 cut(s)	5, 813
BspCNI	CTCAG	1 cut(s)	1173
BspDI	ATCGAT	1 cut(s)	1290
BspFNI	CGCG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	250, 1210
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	2 cut(s)	723, 1058
BsrGI	TGTACA	1 cut(s)	1186
BsrI	ACTGG	4 cut(s)	443, 682, 696, 1429
BssECI	CCNNGG	2 cut(s)	313, 1119
BssMI	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
Bst2UI	CCWGG	2 cut(s)	613, 749
Bst4CI	ACNGT	6 cut(s)	105, 260, 373, 418, 1220, 1333
Bst6I	CTCTTC	6 cut(s)	23, 278, 454, 649, 1021, 1311
BstAUI	TGTACA	1 cut(s)	1186
BstC8I	GCNNGC	3 cut(s)	663, 815, 1149
BstDEI	CTNAG	2 cut(s)	200, 1160
BstF5I	GGATG	1 cut(s)	1251
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	7 cut(s)	245, 339, 574, 722, 1205, 1299, 1408
BstMAI	GTCTC	5 cut(s)	402, 456, 628, 723, 1058
BstMBI	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 185, 205, 401, 1124, 1165, 1361
BstNI	CCWGG	2 cut(s)	613, 749
BstSCI	CCNGG	2 cut(s)	611, 747
BstSLI	GKGCMC	2 cut(s)	620, 1325
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	6 cut(s)	192, 388, 679, 1111, 1114, 1152
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	719
Bsu15I	ATCGAT	1 cut(s)	1290
BsuRI	GGCC	2 cut(s)	5, 813
BsuTUI	ATCGAT	1 cut(s)	1290
BtsCI	GGATG	1 cut(s)	1251
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	5 cut(s)	369, 414, 436, 888, 1338
Cac8I	GCNNGC	3 cut(s)	663, 815, 1149
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	431, 811
ClaI	ATCGAT	1 cut(s)	1290
Csp6I	GTAC	3 cut(s)	1012, 1187, 1221
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	3 cut(s)	215, 922, 1175
CviQI	GTAC	3 cut(s)	1012, 1187, 1221
DdeI	CTNAG	2 cut(s)	200, 1160
DpnI	GATC	7 cut(s)	244, 338, 573, 721, 1204, 1298, 1407
DpnII	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	6 cut(s)	23, 278, 454, 649, 1021, 1311
EarI	CTCTTC	6 cut(s)	23, 278, 454, 649, 1021, 1311
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	2 cut(s)	723, 1058
Eco47I	GGWCC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	2 cut(s)	304, 1246
EcoRII	CCWGG	2 cut(s)	611, 747
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	3 cut(s)	218, 925, 1178
FaqI	GGGAC	2 cut(s)	348, 431
FatI	CATG	3 cut(s)	214, 921, 1174
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	8 cut(s)	189, 206, 402, 487, 693, 1125, 1128, 1166
FokI	GGATG	1 cut(s)	1238
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	8 cut(s)	189, 206, 402, 487, 693, 1125, 1128, 1166
FspBI	CTAG	6 cut(s)	26, 398, 405, 452, 468, 1392
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	8 cut(s)	189, 206, 402, 487, 693, 1125, 1128, 1166
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	5, 813
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	218, 925, 1178
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HindIII	AAGCTT	2 cut(s)	557, 989
HinfI	GANTC	5 cut(s)	298, 410, 464, 937, 1230
HphI	GGTGA	4 cut(s)	268, 529, 936, 1228
Hpy166II	GTNNAC	2 cut(s)	618, 886
Hpy188I	TCNGA	4 cut(s)	303, 314, 826, 1405
Hpy188III	TCNNGA	8 cut(s)	468, 547, 588, 677, 790, 1055, 1094, 1255
Hpy8I	GTNNAC	2 cut(s)	618, 886
HpyAV	CCTTC	2 cut(s)	32, 349
HpyCH4III	ACNGT	6 cut(s)	105, 260, 373, 418, 1220, 1333
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 185, 205, 401, 1124, 1165, 1361
HpyF3I	CTNAG	2 cut(s)	200, 1160
Hsp92II	CATG	3 cut(s)	218, 925, 1178
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	55, 514
Lsp1109I	GCAGC	6 cut(s)	192, 388, 679, 1111, 1114, 1152
MaeI	CTAG	6 cut(s)	26, 398, 405, 452, 468, 1392
MaeIII	GTNAC	3 cut(s)	65, 593, 838
MalI	GATC	7 cut(s)	244, 338, 573, 721, 1204, 1298, 1407
MboI	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
MboII	GAAGA	9 cut(s)	10, 295, 468, 471, 666, 736, 1008, 1152, 1328
MfeI	CAATTG	4 cut(s)	600, 709, 863, 1078
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	3 cut(s)	620, 764, 1325
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	404, 458
MmeI	TCCRAC	1 cut(s)	1260
MnlI	CCTC	9 cut(s)	279, 308, 422, 464, 543, 650, 696, 1114, 1306
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	482, 561, 819, 927
MslI	CAYNNNNRTG	3 cut(s)	213, 1068, 1173
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1411
MspR9I	CCNGG	2 cut(s)	613, 749
MunI	CAATTG	4 cut(s)	600, 709, 863, 1078
Mva1269I	GAATGC	1 cut(s)	1149
MvaI	CCWGG	2 cut(s)	613, 749
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	7 cut(s)	176, 185, 205, 401, 1124, 1165, 1361
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
NlaIII	CATG	3 cut(s)	218, 925, 1178
NmeAIII	GCCGAG	1 cut(s)	1144
NmuCI	GTSAC	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	1116
PctI	GAATGC	1 cut(s)	1149
PfeI	GAWTC	3 cut(s)	298, 937, 1230
PflMI	CCANNNNNTGG	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	8 cut(s)	190, 207, 403, 488, 694, 1126, 1129, 1167
PleI	GAGTC	2 cut(s)	404, 458
PpsI	GAGTC	2 cut(s)	404, 458
Psp6I	CCWGG	2 cut(s)	611, 747
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	611, 747
PspPI	GGNCC	2 cut(s)	431, 811
PsuI	RGATCY	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	1411
RsaI	GTAC	3 cut(s)	1013, 1188, 1222
RsaNI	GTAC	3 cut(s)	1012, 1187, 1221
RseI	CAYNNNNRTG	3 cut(s)	213, 1068, 1173
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	482, 561, 819, 927
SatI	GCNGC	8 cut(s)	189, 206, 402, 487, 693, 1125, 1128, 1166
Sau3AI	GATC	7 cut(s)	242, 336, 571, 719, 1202, 1296, 1405
Sau96I	GGNCC	2 cut(s)	431, 811
ScaI	AGTACT	1 cut(s)	1222
SchI	GAGTC	2 cut(s)	404, 458
ScrFI	CCNGG	2 cut(s)	613, 749
SduI	GDGCHC	3 cut(s)	620, 764, 1325
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	3 cut(s)	213, 1068, 1173
SmlI	CTYRAG	2 cut(s)	902, 1092
SmoI	CTYRAG	2 cut(s)	902, 1092
SsiI	CCGC	3 cut(s)	188, 486, 1050
SspMI	CTAG	6 cut(s)	26, 398, 405, 452, 468, 1392
StyD4I	CCNGG	2 cut(s)	611, 747
TaaI	ACNGT	6 cut(s)	105, 260, 373, 418, 1220, 1333
TaqI	TCGA	4 cut(s)	491, 1056, 1273, 1290
TatI	WGTACW	3 cut(s)	1011, 1186, 1220
TauI	GCSGC	2 cut(s)	191, 489
TfiI	GAWTC	3 cut(s)	298, 937, 1230
Tru1I	TTAA	4 cut(s)	482, 561, 819, 927
Tru9I	TTAA	4 cut(s)	482, 561, 819, 927
TscAI	CASTG	5 cut(s)	376, 421, 443, 888, 1338
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	6 cut(s)	205, 401, 692, 1124, 1127, 1165
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	513, 1222
TspRI	CASTG	5 cut(s)	376, 421, 443, 888, 1338
Van91I	CCANNNNNTGG	1 cut(s)	722
VneI	GTGCAC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	2 cut(s)	304, 1246
XbaI	TCTAGA	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XspI	CTAG	6 cut(s)	26, 398, 405, 452, 468, 1392
ZrmI	AGTACT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.