Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009122

Physical Location & Seq

Genomic Coordinates Reverse (-)

11615566 .. 11618338

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1139300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCAACTCTTTGAGCTTCCTTCTAGCTCTTTCTCTTCTTGCATTTTCTCCACTATGTTTCTGTCACAAAACTCCTGGTGGGTATCTCTACCCACAGTTTTATGACCGCTCCTGCCCCAGAGCCAAAGAGATTGTCAAGTCCGTTGTTGCGAAAGCCGTTGCAAGGGAAACCCGAATGGCAGCTTCTTTGCTCAGGCTGCATTTCCATGACTGTTTCGTGAAGGGTTGTGATGCATCAATTCTGCTGGACAGCAGCCAGAACGTAATCACCGAAAAGATGTCTGTCCCGAACCAGAATTCAGCGCGAGGGTTCGAAGTGATTGACGAAATCAAGTCTGCATTGGAGAAGGAGTGCCCCAGCACTGTGTCTTGTGCTGACATTTTGGCTCTTGCTGCTAGAGACTCAACTGTTCTGACTGGAGGGCCGAACTGGGAGGTCCCACTAGGAAGAAGGGATTCAAGAGGAGCAAGTTTGAGTGGCTCCAACAGCAACATTCCTGCCCCAAACAACACATTCCAAACTATTCTCACCAAATTCAAATTGAAAAAGCTCGACATTGTTGATCTTGTTGCACTATCTGGAAGCCACACCATTGGAAATGCCAGGTGCACCACCTTCAGGCAGAGGCTCTACATCCAATCGGGCAACGGCCTGGCTGACTTCACCCTTGACCAGTCCTTCGCCGCCCAGCTTCGAACCAGGTGCCCAAGATCCGGCGGGGACCAGAACCTGTTCGTGATGGACTTTGTGAGCCCTACGAAGTTCGACAACAGTTACTTCAAGAACCTGCTGGCCTCCAAGGGGCTTCTGAACTCGGACGAAGTTCTCGTCACGAAAAGTCAGGTGTCGAAGCAGTTGGTGCAGCAGTATGCAGAGAACAATGAGCTTTTCTTTGAGCAGTTTGCCAAGTCAATGGTTAAGATGGGCAATATTTCTCCGATTACGGGGTCCAGTGGAGAGATTAGGAAGAGCTGCAGGAAGGTTAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

332

Amino Acids

36.29

Weight (kDa)

9.13

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 294	9.2e-85	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18140 AT2G18150 AT4G36430 AT5G66390
fragaria_vesca	FvH4_1g12490
malus_domestica	MD02G1138900.v1.1 MD02G1139300.v1.1 MD15G1252300.v1.1
prunus_persica	Prupe.7G161900_v2.0.a1
pyrus_communis	pycom02g11000 pycom15g22220
rosa_chinensis	RchiOBHm_Chr2g0100381
rosa_laevigata	RLG00000016969
rosa_multiflora	Rmu_sc0001095.1_g000016 Rmu_sc0004164.1_g000002 Rmu_sc0027393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142290
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2AG137000 Rh2CG142400 Rh2DG142400
rosa_wichuraiana	Rw2G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	705
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	109, 687, 720
AclWI	GGATC	1 cut(s)	708
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	298, 536
AcuI	CTGAAG	1 cut(s)	604
AfiI	CCNNNNNNNGG	5 cut(s)	165, 621, 716, 804, 947
AgsI	TTSAA	4 cut(s)	462, 541, 547, 784
AjnI	CCWGG	4 cut(s)	76, 605, 654, 701
AluBI	AGCT	7 cut(s)	18, 29, 185, 553, 694, 889, 975
AluI	AGCT	7 cut(s)	18, 29, 185, 553, 694, 889, 975
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	1 cut(s)	396
Alw44I	GTGCAC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	708
AlwNI	CAGNNNCTG	1 cut(s)	733
AoxI	GGCC	4 cut(s)	3, 425, 652, 795
ApaLI	GTGCAC	1 cut(s)	610
ApeKI	GCWGC	6 cut(s)	182, 199, 255, 395, 865, 975
ApoI	RAATTY	2 cut(s)	298, 536
ArsI	GACNNNNNNTTYG	6 cut(s)	120, 152, 665, 697, 816, 848
Asp700I	GAANNNNTTC	2 cut(s)	457, 734
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	4 cut(s)	425, 439, 724, 951
AsuHPI	GGTGA	3 cut(s)	262, 523, 658
AsuII	TTCGAA	2 cut(s)	315, 697
AvaII	GGWCC	3 cut(s)	439, 724, 951
BaeGI	GKGCMC	3 cut(s)	359, 614, 710
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	6 cut(s)	186, 194, 267, 382, 877, 962
BccI	CCATC	2 cut(s)	736, 919
BceAI	ACGGC	2 cut(s)	143, 667
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	4 cut(s)	78, 607, 656, 703
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	3 cut(s)	26, 399, 446
BfmI	CTRYAG	1 cut(s)	976
BfuAI	ACCTGC	1 cut(s)	798
BisI	GCNGC	7 cut(s)	183, 200, 256, 396, 687, 866, 976
BlsI	GCNGC	7 cut(s)	184, 201, 257, 397, 688, 867, 977
Bme1390I	CCNGG	4 cut(s)	78, 607, 656, 703
Bme18I	GGWCC	3 cut(s)	439, 724, 951
BmgT120I	GGNCC	4 cut(s)	425, 439, 724, 951
BmiI	GGNNCC	5 cut(s)	441, 484, 707, 725, 952
BmrFI	CCNGG	4 cut(s)	78, 607, 656, 703
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	223, 245
BmuI	ACTGGG	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	194
Bpu14I	TTCGAA	2 cut(s)	315, 697
BsaJI	CCNNGG	1 cut(s)	801
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 621, 716, 804, 947
Bse1I	ACTGG	4 cut(s)	424, 437, 676, 954
BseBI	CCWGG	4 cut(s)	78, 607, 656, 703
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	1 cut(s)	636
BseLI	CCNNNNNNNGG	5 cut(s)	165, 621, 716, 804, 947
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	4 cut(s)	424, 437, 676, 954
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	3 cut(s)	359, 614, 710
BseXI	GCAGC	6 cut(s)	186, 194, 267, 382, 877, 962
BseYI	CCCAGC	2 cut(s)	359, 690
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	5, 427, 654, 797
BshNI	GGYRCC	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	717
BslFI	GGGAC	3 cut(s)	272, 425, 737
BslI	CCNNNNNNNGG	5 cut(s)	165, 621, 716, 804, 947
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	3 cut(s)	272, 425, 737
BsnI	GGCC	4 cut(s)	5, 427, 654, 797
Bsp119I	TTCGAA	2 cut(s)	315, 697
Bsp1286I	GDGCHC	4 cut(s)	359, 614, 710, 758
Bsp143I	GATC	2 cut(s)	565, 713
BspACI	CCGC	3 cut(s)	109, 687, 720
BspANI	GGCC	4 cut(s)	5, 427, 654, 797
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	5 cut(s)	441, 484, 707, 725, 952
BspMAI	CTGCAG	1 cut(s)	980
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	708
BspQI	GCTCTTC	1 cut(s)	965
BspT104I	TTCGAA	2 cut(s)	315, 697
BspT107I	GGYRCC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	111
BsrI	ACTGG	4 cut(s)	424, 437, 676, 954
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	2 cut(s)	565, 713
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	4 cut(s)	78, 607, 656, 703
Bst4CI	ACNGT	5 cut(s)	99, 215, 367, 412, 776
Bst6I	CTCTTC	2 cut(s)	42, 965
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstBI	TTCGAA	2 cut(s)	315, 697
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	568, 716
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	565, 713
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 395, 489, 862
BstNI	CCWGG	4 cut(s)	78, 607, 656, 703
BstSCI	CCNGG	4 cut(s)	76, 605, 654, 701
BstSFI	CTRYAG	1 cut(s)	976
BstSLI	GKGCMC	3 cut(s)	359, 614, 710
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	6 cut(s)	186, 194, 267, 382, 877, 962
BstX2I	RGATCY	1 cut(s)	713
BstXI	CCANNNNNNTGG	2 cut(s)	596, 916
BstYI	RGATCY	1 cut(s)	713
BsuRI	GGCC	4 cut(s)	5, 427, 654, 797
BtsCI	GGATG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	363, 961
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	4 cut(s)	425, 439, 724, 951
CsiI	ACCWGGT	1 cut(s)	701
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	567, 715
DpnII	GATC	2 cut(s)	565, 713
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	42, 965
EarI	CTCTTC	2 cut(s)	42, 965
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	758
Eco47I	GGWCC	3 cut(s)	439, 724, 951
Eco57I	CTGAAG	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	4 cut(s)	76, 605, 654, 701
EcoT14I	CCWWGG	1 cut(s)	801
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	58, 105, 210, 873
FaqI	GGGAC	3 cut(s)	272, 425, 737
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	7 cut(s)	183, 200, 256, 396, 687, 866, 976
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	7 cut(s)	183, 200, 256, 396, 687, 866, 976
FspBI	CTAG	3 cut(s)	26, 399, 446
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	7 cut(s)	183, 200, 256, 396, 687, 866, 976
GsaI	CCCAGC	2 cut(s)	363, 694
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	5, 427, 654, 797
HapII	CCGG	1 cut(s)	717
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HinfI	GANTC	2 cut(s)	404, 458
HpaI	GTTAAC	1 cut(s)	988
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	262, 523, 658
Hpy166II	GTNNAC	2 cut(s)	612, 988
Hpy188I	TCNGA	4 cut(s)	417, 813, 820, 942
Hpy188III	TCNNGA	7 cut(s)	220, 289, 462, 582, 739, 784, 835
Hpy8I	GTNNAC	2 cut(s)	612, 988
HpyAV	CCTTC	7 cut(s)	32, 217, 343, 447, 628, 691, 976
HpyCH4III	ACNGT	5 cut(s)	99, 215, 367, 412, 776
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 395, 489, 862
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	305
KspAI	GTTAAC	1 cut(s)	988
Kzo9I	GATC	2 cut(s)	565, 713
LguI	GCTCTTC	1 cut(s)	965
LmnI	GCTCC	3 cut(s)	116, 467, 488
Lsp1109I	GCAGC	6 cut(s)	186, 194, 267, 382, 877, 962
LweI	GCATC	2 cut(s)	223, 245
MabI	ACCWGGT	1 cut(s)	701
MaeI	CTAG	3 cut(s)	26, 399, 446
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	3 cut(s)	65, 776, 832
MalI	GATC	2 cut(s)	567, 715
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	2 cut(s)	565, 713
MboII	GAAGA	3 cut(s)	29, 462, 982
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	4 cut(s)	359, 614, 710, 758
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	240, 298, 536, 542
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	302, 416, 430, 458, 621, 808
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	457, 734
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	921, 987, 994
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	4 cut(s)	78, 607, 656, 703
MvaI	CCWGG	4 cut(s)	78, 607, 656, 703
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	199, 395, 489, 862
NdeII	GATC	2 cut(s)	565, 713
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	5 cut(s)	441, 484, 707, 725, 952
NmuCI	GTSAC	2 cut(s)	65, 832
NsiI	ATGCAT	1 cut(s)	238
NspV	TTCGAA	2 cut(s)	315, 697
PciSI	GCTCTTC	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 828
PdmI	GAANNNNTTC	2 cut(s)	457, 734
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	184, 201, 257, 397, 688, 867, 977
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	4 cut(s)	76, 605, 654, 701
PspFI	CCCAGC	2 cut(s)	359, 690
PspGI	CCWGG	4 cut(s)	76, 605, 654, 701
PspN4I	GGNNCC	5 cut(s)	441, 484, 707, 725, 952
PspPI	GGNCC	4 cut(s)	425, 439, 724, 951
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	980
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	965
SaqAI	TTAA	3 cut(s)	921, 987, 994
SatI	GCNGC	7 cut(s)	183, 200, 256, 396, 687, 866, 976
Sau3AI	GATC	2 cut(s)	565, 713
Sau96I	GGNCC	4 cut(s)	425, 439, 724, 951
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	4 cut(s)	78, 607, 656, 703
SduI	GDGCHC	4 cut(s)	359, 614, 710, 758
SexAI	ACCWGGT	1 cut(s)	701
SfaNI	GCATC	2 cut(s)	223, 245
SfcI	CTRYAG	1 cut(s)	976
SfuI	TTCGAA	2 cut(s)	315, 697
SinI	GGWCC	3 cut(s)	439, 724, 951
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	4 cut(s)	240, 298, 536, 542
SsiI	CCGC	3 cut(s)	109, 687, 720
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	3 cut(s)	26, 399, 446
StyD4I	CCNGG	4 cut(s)	76, 605, 654, 701
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	5 cut(s)	99, 215, 367, 412, 776
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	5 cut(s)	315, 555, 697, 768, 851
TasI	AATT	4 cut(s)	240, 298, 536, 542
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	921, 987, 994
Tru9I	TTAA	3 cut(s)	921, 987, 994
TscAI	CASTG	2 cut(s)	370, 961
TseFI	GTSAC	2 cut(s)	65, 832
TseI	GCWGC	6 cut(s)	182, 199, 255, 395, 865, 975
Tsp45I	GTSAC	2 cut(s)	65, 832
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	370, 961
VneI	GTGCAC	1 cut(s)	610
VpaK11BI	GGWCC	3 cut(s)	439, 724, 951
XapI	RAATTY	2 cut(s)	298, 536
XmnI	GAANNNNTTC	2 cut(s)	457, 734
XspI	CTAG	3 cut(s)	26, 399, 446
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.