Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Reverse (-)

26921584 .. 26923488

Gene Structure 1905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGGCATCTTCTTTACATTTTCCTCTTCATTGCCTTTCTCAGTTTTGCAGGAGCTGGTCAAGAATCAACACCCATTGAAGCTCTAAACCTCAACAACAATCTCCTTCAACTTCCTCAAACCACTGATCTTGATCTCGCTGTTTCAGTAAGTGGCAACAAAACCATCACTGAGATTTCCTCAAGTATCATAAAAGCTGAAACTTGGCTTAAAACCCATATCCTCTCTCGTTACCCTTCCACCAAAATCACCACCATTGTTATATTTTTCCCTGATTCTTGCCAAACCACACAACACAGCTCTGATCTGGTTTTATCTTCTTTGAAAAACATATACCATTCTCTCACAAGATGGGGTCTCGAGAACAACATCAAAGTCTCCTCTGGCTTCTCTTACCAATGCTTAAACAACCCAAAAAGCTCAGAAATGTTCAAACCTGTTCTCATCTTCCTCAAAACCATAAACTCAACTTTCACCATAAACCCACCTCAAAACTTCCTTACTTCCCCTCATAACCATCGTGATCTGCTTCATTCCGTTGAAAAGCTCGGATCTTTAAGCTTCAACAAAGTCAATTTCTTAAACCCTGAGCCAGAACAAGAATCTACAACGACGATGACAAGAAGAAATCTAAGATCTTTAGTCAACCTCAGCAGCAAATTCACAACCTCTTTCCCAACATTACCATCTCCGTCACCAGAAACTTCACCAATTCACTCCTCAATTGGATCTCCATCTCCACCTACTATACCCTATTTCCCTGAACCTTCACAATCTCCGATGGAATCAAATCAAGGGATCTCTCTTCCACCGTGCCTTCCTTATCATCCAGCGCCGTCACCGCAACCGGTAAAGAAGAAGAACGTGGAAGGGCTATGGTGCGTGGCGAAACCTAGCGTAGCGGCAGAGACATTGCAACAGTCTCTGGACTTTGCGTGTGGACAAGGAGGAGCCAATTGCGATGAGATTAAACCTCATGGTATATGTTACTATCCAGACACAGTCATGGCTCATGCCTCTTATGCTTTCAACAGTTATTGGCAAAAGACTAAACGAAACGGAGGTACTTGCTCTTTCGGTGGAACCGCCATGCTTATCACCACTGACCCGAGTTATCAGCATTGCCGTTTTGTTCTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

380

Amino Acids

42.0

Weight (kDa)

8.3

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	25 - 146	3.4e-09	Glycosyl hydrolases family 17
X8	PF07983	292 - 364	1.4e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	842, 902, 1086
AclWI	GGATC	3 cut(s)	559, 736, 806
AcsI	RAATTY	1 cut(s)	659
AfaI	GTAC	1 cut(s)	1066
AgeI	ACCGGT	1 cut(s)	847
AgsI	TTSAA	7 cut(s)	80, 110, 325, 433, 542, 565, 1030
AluBI	AGCT	7 cut(s)	56, 83, 197, 300, 420, 547, 561
AluI	AGCT	7 cut(s)	56, 83, 197, 300, 420, 547, 561
Alw26I	GTCTC	4 cut(s)	362, 382, 902, 927
AlwI	GGATC	3 cut(s)	559, 736, 806
AlwNI	CAGNNNCTG	2 cut(s)	56, 925
Ama87I	CYCGRG	2 cut(s)	359, 1108
ApeKI	GCWGC	1 cut(s)	654
ApoI	RAATTY	1 cut(s)	659
AsiGI	ACCGGT	1 cut(s)	847
AspLEI	GCGC	1 cut(s)	835
AsuHPI	GGTGA	6 cut(s)	241, 466, 687, 699, 831, 1090
AvaI	CYCGRG	2 cut(s)	359, 1108
BbvCI	CCTCAGC	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	666
BccI	CCATC	6 cut(s)	173, 345, 525, 694, 742, 775
BceAI	ACGGC	2 cut(s)	820, 1110
BcoDI	GTCTC	4 cut(s)	362, 382, 902, 927
BfaI	CTAG	1 cut(s)	894
BfoI	RGCGCY	1 cut(s)	836
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	2 cut(s)	655, 903
BlsI	GCNGC	2 cut(s)	656, 904
BmeT110I	CYCGRG	2 cut(s)	359, 1108
BmiI	GGNNCC	2 cut(s)	952, 1084
BmsI	GCATC	1 cut(s)	16
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	2 cut(s)	588, 650
BpuEI	CTTGAG	1 cut(s)	166
BsaBI	GATNNNNATC	2 cut(s)	132, 733
BsaI	GGTCTC	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	847
Bse118I	RCCGGY	1 cut(s)	847
Bse3DI	GCAATG	3 cut(s)	30, 911, 1120
Bse8I	GATNNNNATC	2 cut(s)	132, 733
BseGI	GGATG	1 cut(s)	826
BseJI	GATNNNNATC	2 cut(s)	132, 733
BseMI	GCAATG	3 cut(s)	30, 911, 1120
BseMII	CTCAG	6 cut(s)	55, 162, 435, 579, 664, 1127
BseRI	GAGGAG	3 cut(s)	370, 709, 963
BseXI	GCAGC	1 cut(s)	666
BshTI	ACCGGT	1 cut(s)	847
BsiHKCI	CYCGRG	2 cut(s)	359, 1108
BsiSI	CCGG	1 cut(s)	848
BsmAI	GTCTC	4 cut(s)	362, 382, 902, 927
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	359, 1108
Bsp143I	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
BspACI	CCGC	3 cut(s)	842, 902, 1086
BspCNI	CTCAG	6 cut(s)	54, 163, 434, 580, 663, 1128
BspLI	GGNNCC	2 cut(s)	952, 1084
BspPI	GGATC	3 cut(s)	559, 736, 806
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	3 cut(s)	30, 911, 1120
BsrFI	RCCGGY	1 cut(s)	847
BssAI	RCCGGY	1 cut(s)	847
BssMI	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
Bst4CI	ACNGT	4 cut(s)	813, 921, 1003, 1034
Bst6I	CTCTTC	2 cut(s)	32, 810
BstDEI	CTNAG	7 cut(s)	41, 171, 421, 588, 632, 650, 1136
BstF5I	GGATG	1 cut(s)	826
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	8 cut(s)	130, 136, 307, 526, 554, 638, 731, 801
BstMAI	GTCTC	4 cut(s)	362, 382, 902, 927
BstMBI	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	841, 1022
BstV1I	GCAGC	1 cut(s)	666
BstX2I	RGATCY	4 cut(s)	551, 635, 728, 798
BstYI	RGATCY	4 cut(s)	551, 635, 728, 798
BtgZI	GCGATG	1 cut(s)	975
BtsCI	GGATG	1 cut(s)	826
BtsIMutI	CAGTG	3 cut(s)	123, 168, 1101
CaiI	CAGNNNCTG	2 cut(s)	56, 925
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	1065
CspAI	ACCGGT	1 cut(s)	847
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	4 cut(s)	977, 1006, 1013, 1090
CviQI	GTAC	1 cut(s)	1065
DdeI	CTNAG	7 cut(s)	41, 171, 421, 588, 632, 650, 1136
DpnI	GATC	8 cut(s)	129, 135, 306, 525, 553, 637, 730, 800
DpnII	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
Eam1104I	CTCTTC	2 cut(s)	32, 810
EarI	CTCTTC	2 cut(s)	32, 810
Eco31I	GGTCTC	1 cut(s)	362
Eco88I	CYCGRG	2 cut(s)	359, 1108
FaeI	CATG	4 cut(s)	980, 1009, 1016, 1093
FatI	CATG	4 cut(s)	976, 1005, 1012, 1089
Fnu4HI	GCNGC	2 cut(s)	655, 903
FokI	GGATG	1 cut(s)	813
Fsp4HI	GCNGC	2 cut(s)	655, 903
FspBI	CTAG	1 cut(s)	894
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	2 cut(s)	655, 903
HaeII	RGCGCY	1 cut(s)	836
HapII	CCGG	1 cut(s)	848
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	4 cut(s)	980, 1009, 1016, 1093
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	4 cut(s)	65, 275, 602, 785
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	6 cut(s)	241, 466, 687, 699, 831, 1090
Hpy166II	GTNNAC	2 cut(s)	646, 941
Hpy188I	TCNGA	5 cut(s)	304, 424, 551, 780, 1137
Hpy188III	TCNNGA	7 cut(s)	62, 131, 359, 361, 521, 926, 995
Hpy8I	GTNNAC	2 cut(s)	646, 941
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	5 cut(s)	116, 246, 777, 827, 863
HpyCH4III	ACNGT	4 cut(s)	813, 921, 1003, 1034
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	2 cut(s)	50, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	841, 1022
HpyF3I	CTNAG	7 cut(s)	41, 171, 421, 588, 632, 650, 1136
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	4 cut(s)	980, 1009, 1016, 1093
HspAI	GCGC	1 cut(s)	833
Kzo9I	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
LmnI	GCTCC	2 cut(s)	53, 950
Lsp1109I	GCAGC	1 cut(s)	666
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	894
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	4 cut(s)	230, 693, 837, 986
MalI	GATC	8 cut(s)	129, 135, 306, 525, 553, 637, 730, 800
MboI	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
MboII	GAAGA	7 cut(s)	19, 309, 439, 636, 797, 868, 871
MfeI	CAATTG	2 cut(s)	723, 955
MflI	RGATCY	4 cut(s)	551, 635, 728, 798
MluCI	AATT	5 cut(s)	574, 659, 711, 723, 955
MseI	TTAA	5 cut(s)	210, 404, 557, 581, 969
MslI	CAYNNNNRTG	1 cut(s)	1004
MspI	CCGG	1 cut(s)	848
MunI	CAATTG	2 cut(s)	723, 955
MwoI	GCNNNNNNNGC	2 cut(s)	841, 1022
NdeII	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
NlaIII	CATG	4 cut(s)	980, 1009, 1016, 1093
NlaIV	GGNNCC	2 cut(s)	952, 1084
NmuCI	GTSAC	2 cut(s)	693, 837
PaeR7I	CTCGAG	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	65, 275, 602, 785
PflFI	GACNNNGTC	1 cut(s)	1001
PinAI	ACCGGT	1 cut(s)	847
PkrI	GCNGC	2 cut(s)	656, 904
PspN4I	GGNNCC	2 cut(s)	952, 1084
PstNI	CAGNNNCTG	2 cut(s)	56, 925
PsuI	RGATCY	4 cut(s)	551, 635, 728, 798
PsyI	GACNNNGTC	1 cut(s)	1001
RsaI	GTAC	1 cut(s)	1066
RsaNI	GTAC	1 cut(s)	1065
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	5 cut(s)	210, 404, 557, 581, 969
SatI	GCNGC	2 cut(s)	655, 903
Sau3AI	GATC	8 cut(s)	127, 133, 304, 523, 551, 635, 728, 798
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	181, 359
SmoI	CTYRAG	2 cut(s)	181, 359
Sse9I	AATT	5 cut(s)	574, 659, 711, 723, 955
SsiI	CCGC	3 cut(s)	842, 902, 1086
SspMI	CTAG	1 cut(s)	894
TaaI	ACNGT	4 cut(s)	813, 921, 1003, 1034
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	360
TasI	AATT	5 cut(s)	574, 659, 711, 723, 955
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	4 cut(s)	65, 275, 602, 785
Tru1I	TTAA	5 cut(s)	210, 404, 557, 581, 969
Tru9I	TTAA	5 cut(s)	210, 404, 557, 581, 969
TscAI	CASTG	3 cut(s)	130, 175, 1108
TseFI	GTSAC	2 cut(s)	693, 837
TseI	GCWGC	1 cut(s)	654
Tsp45I	GTSAC	2 cut(s)	693, 837
TspDTI	ATGAA	2 cut(s)	19, 521
TspGWI	ACGGA	3 cut(s)	526, 681, 1074
TspRI	CASTG	3 cut(s)	130, 175, 1108
Tth111I	GACNNNGTC	1 cut(s)	1001
XapI	RAATTY	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.