Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Reverse (-)

10138738 .. 10141816

Gene Structure 3079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17490.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTTGAAGATGGTGTGGCTTATCTTCTTCCAGCTTATGTTTCTGGGTCTTTCTGGTGCAACGCAAGAATCTGCTCAAGTCCTAACTCTCTTTGAGACATCCCATGAGGTGTTTCAAGGTTCAAATCTTCCCATAGCTGTTTCTGTGAGAGAGCTCAGTGAGGTATCAACCAGTGTGTTAATGGCTGAAACATGGCTCAGAACCCATGTTCTAGGTCACTACCCTTCCATCCCCATCACCACCATTCTTGTGGGTGACACCATTCTCTGCTCTGAACATCACAACAATCTGAGCTTGGTGTTACTAGCCCTCAAGAACATCCATCACTCTCTCACAAGGTGGGGTCTTGAGAAAGACATCAAAGTCTCAGCTGCTTTCTCTTCTGGTTGTTTGGGCAAGAGCTCCGAGAGGTTTGTGAGGCCTATACTAGAGTTTCTCCAGGACACCAACTCTACCTACTCTGTGAACCCACCTCCAAAGGTCTCACCTTTCTCTGATGAAACCATTCAGCTGGTGTCTTCTCACTCAGAAACCCTTAAAAAGCTTGGATTTTTGGGGCTCAGAAACATCAATGTGATAGTCACCAACCCAAAAGAGGCAAAACCAAGAACCAGAAAGCTCTCTTCCATTGACCCATTTCCAACTAGACCAAACCCACAACCCATAACCTCAGACCCCCCACTCCACTCCTCTGTTGGCTTCTCTGTTCCTGCCAATGTAGCCAAAAACCCTCAACCCCCACAAGCCCAGCTAGCCTCACCAGCACCATCCCAAACAGCCTCACCTCCAATTCCTGAAACAGCTTCACCACCAGTGGAAATGTGGTTTCCTCATGCCCCTGAAGTCTCTCCTGTTCAAGCCACTCCTTCCCCTTCTGCTTATGTAATGCCACCCTGTAGAGCCCCAGCACCTGAATTTAGGCCTGTGCATAAGCTGTGGTGTGTGGCCAAGCCTACCGTTCCGGCAGAGACATTGCAGGAGGCGGTGGACTATGCTTGTGGAGCTGGTGGTGCTGATTGCGAGGAGATTATGCCAAGTGGAAACTGCTACTACCCTGAGTCTGTTGTAGCTCATGCTTCTTATGCTTTCAACAGCTACTGGCAGAAGAACAAGAGGAATGGAGGCACTTGCAGCTTTGGTGGCACAGCTATGCTGATCAACAGTGACCCAAGTTATGAACTCTGCCGTTTTATTATCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

401

Amino Acids

43.6

Weight (kDa)

6.46

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 109	1.2e-06	Glycosyl hydrolases family 17
X8	PF07983	252 - 324	1.4e-23	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AciI	CCGC	1 cut(s)	983
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	1 cut(s)	861
AdeI	CACNNNGTG	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	7, 116, 123, 857, 1090
AjnI	CCWGG	1 cut(s)	438
Alw21I	GWGCWC	2 cut(s)	156, 404
Alw26I	GTCTC	5 cut(s)	89, 370, 487, 850, 962
AlwNI	CAGNNNCTG	2 cut(s)	911, 1098
AoxI	GGCC	3 cut(s)	419, 920, 945
ApeKI	GCWGC	2 cut(s)	371, 1131
ApoI	RAATTY	1 cut(s)	914
Asp700I	GAANNNNTTC	1 cut(s)	504
AsuHPI	GGTGA	8 cut(s)	229, 266, 477, 574, 750, 774, 798, 1189
AsuNHI	GCTAGC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	947
BanII	GRGCYC	4 cut(s)	156, 404, 561, 904
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	156, 404
BbvI	GCAGC	2 cut(s)	358, 1143
BccI	CCATC	5 cut(s)	4, 236, 242, 330, 775
BceAI	ACGGC	1 cut(s)	1170
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	1155
BcoDI	GTCTC	5 cut(s)	89, 370, 487, 850, 962
BfaI	CTAG	5 cut(s)	212, 305, 428, 645, 752
BfmI	CTRYAG	1 cut(s)	895
BisI	GCNGC	2 cut(s)	372, 1132
BlsI	GCNGC	2 cut(s)	373, 1133
Bme1390I	CCNGG	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	60, 296, 368
BsaI	GGTCTC	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	3 cut(s)	171, 812, 1103
Bse3DI	GCAATG	1 cut(s)	971
BseBI	CCWGG	1 cut(s)	440
BseGI	GGATG	4 cut(s)	98, 228, 318, 767
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	8 cut(s)	169, 211, 281, 381, 540, 574, 684, 1047
BseNI	ACTGG	3 cut(s)	171, 812, 1103
BseRI	GAGGAG	2 cut(s)	679, 1037
BseXI	GCAGC	2 cut(s)	358, 1143
BseYI	CCCAGC	2 cut(s)	747, 904
BshFI	GGCC	3 cut(s)	421, 922, 947
BsiHKAI	GWGCWC	2 cut(s)	156, 404
BsiSI	CCGG	1 cut(s)	962
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	5 cut(s)	89, 370, 487, 850, 962
BsnI	GGCC	3 cut(s)	421, 922, 947
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	4 cut(s)	156, 404, 561, 904
Bsp143I	GATC	1 cut(s)	1155
BspACI	CCGC	1 cut(s)	983
BspANI	GGCC	3 cut(s)	421, 922, 947
BspCNI	CTCAG	8 cut(s)	168, 210, 282, 380, 539, 573, 683, 1048
BspOI	GCTAGC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	971
BsrI	ACTGG	3 cut(s)	171, 812, 1103
BssMI	GATC	1 cut(s)	1155
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	958, 1163
Bst6I	CTCTTC	2 cut(s)	385, 628
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	8 cut(s)	155, 197, 290, 367, 526, 560, 670, 1056
BstF5I	GGATG	4 cut(s)	98, 228, 318, 767
BstKTI	GATC	1 cut(s)	1158
BstMAI	GTCTC	5 cut(s)	89, 370, 487, 850, 962
BstMBI	GATC	1 cut(s)	1155
BstMWI	GCNNNNNNNGC	8 cut(s)	719, 752, 761, 1001, 1010, 1082, 1131, 1140
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	895
BstV1I	GCAGC	2 cut(s)	358, 1143
BstV2I	GAAGAC	1 cut(s)	510
BstXI	CCANNNNNNTGG	2 cut(s)	250, 511
BsuRI	GGCC	3 cut(s)	421, 922, 947
BtsCI	GGATG	4 cut(s)	98, 228, 318, 767
BtsIMutI	CAGTG	4 cut(s)	163, 178, 819, 1168
Cac8I	GCNNGC	1 cut(s)	753
CaiI	CAGNNNCTG	2 cut(s)	911, 1098
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	5 cut(s)	104, 192, 206, 833, 1073
DdeI	CTNAG	8 cut(s)	155, 197, 290, 367, 526, 560, 670, 1056
DpnI	GATC	1 cut(s)	1157
DpnII	GATC	1 cut(s)	1155
DraIII	CACNNNGTG	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	2 cut(s)	385, 628
EarI	CTCTTC	2 cut(s)	385, 628
Ecl136II	GAGCTC	2 cut(s)	154, 402
Eco147I	AGGCCT	2 cut(s)	421, 922
Eco24I	GRGCYC	4 cut(s)	156, 404, 561, 904
Eco31I	GGTCTC	1 cut(s)	487
Eco53kI	GAGCTC	2 cut(s)	154, 402
Eco57I	CTGAAG	1 cut(s)	861
EcoICRI	GAGCTC	2 cut(s)	154, 402
EcoRII	CCWGG	1 cut(s)	438
EcoT38I	GRGCYC	4 cut(s)	156, 404, 561, 904
FaeI	CATG	5 cut(s)	107, 195, 209, 836, 1076
FatI	CATG	5 cut(s)	103, 191, 205, 832, 1072
FbaI	TGATCA	1 cut(s)	1155
Fnu4HI	GCNGC	2 cut(s)	372, 1132
FokI	GGATG	4 cut(s)	85, 215, 305, 754
FriOI	GRGCYC	4 cut(s)	156, 404, 561, 904
Fsp4HI	GCNGC	2 cut(s)	372, 1132
FspBI	CTAG	5 cut(s)	212, 305, 428, 645, 752
GluI	GCNGC	2 cut(s)	372, 1132
GsaI	CCCAGC	2 cut(s)	751, 908
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	421, 922, 947
HapII	CCGG	1 cut(s)	962
Hin1II	CATG	5 cut(s)	107, 195, 209, 836, 1076
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	2 cut(s)	68, 1058
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	8 cut(s)	229, 266, 477, 574, 750, 774, 798, 1189
Hpy166II	GTNNAC	2 cut(s)	466, 988
Hpy188I	TCNGA	8 cut(s)	200, 274, 291, 406, 496, 529, 563, 673
Hpy188III	TCNNGA	3 cut(s)	313, 347, 794
Hpy8I	GTNNAC	2 cut(s)	466, 988
HpyAV	CCTTC	3 cut(s)	234, 876, 882
HpyCH4III	ACNGT	2 cut(s)	958, 1163
HpyCH4V	TGCA	4 cut(s)	59, 928, 976, 1131
HpyF10VI	GCNNNNNNNGC	8 cut(s)	719, 752, 761, 1001, 1010, 1082, 1131, 1140
HpyF3I	CTNAG	8 cut(s)	155, 197, 290, 367, 526, 560, 670, 1056
Hsp92II	CATG	5 cut(s)	107, 195, 209, 836, 1076
Ksp22I	TGATCA	1 cut(s)	1155
Kzo9I	GATC	1 cut(s)	1155
LmnI	GCTCC	2 cut(s)	407, 1001
Lsp1109I	GCAGC	2 cut(s)	358, 1143
MaeI	CTAG	5 cut(s)	212, 305, 428, 645, 752
MaeIII	GTNAC	5 cut(s)	215, 254, 300, 580, 1163
MalI	GATC	1 cut(s)	1157
MboI	GATC	1 cut(s)	1155
MboII	GAAGA	8 cut(s)	16, 19, 19, 119, 372, 510, 615, 1117
MhlI	GDGCHC	4 cut(s)	156, 404, 561, 904
MlsI	TGGCCA	1 cut(s)	947
MluCI	AATT	2 cut(s)	789, 914
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	1 cut(s)	665
Mox20I	TGGCCA	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	2 cut(s)	179, 537
MslI	CAYNNNNRTG	3 cut(s)	248, 572, 1148
Msp20I	TGGCCA	1 cut(s)	947
MspA1I	CMGCKG	2 cut(s)	371, 511
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	8 cut(s)	719, 752, 761, 1001, 1010, 1082, 1131, 1140
NdeII	GATC	1 cut(s)	1155
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	5 cut(s)	107, 195, 209, 836, 1076
NmuCI	GTSAC	4 cut(s)	215, 254, 580, 1163
PceI	AGGCCT	2 cut(s)	421, 922
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	373, 1133
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
Psp124BI	GAGCTC	2 cut(s)	156, 404
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	747, 904
PspGI	CCWGG	1 cut(s)	438
PstNI	CAGNNNCTG	2 cut(s)	911, 1098
PvuII	CAGCTG	2 cut(s)	371, 511
RseI	CAYNNNNRTG	3 cut(s)	248, 572, 1148
SacI	GAGCTC	2 cut(s)	156, 404
SaqAI	TTAA	2 cut(s)	179, 537
SatI	GCNGC	2 cut(s)	372, 1132
Sau3AI	GATC	1 cut(s)	1155
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	4 cut(s)	156, 404, 561, 904
SfcI	CTRYAG	1 cut(s)	895
SmiMI	CAYNNNNRTG	3 cut(s)	248, 572, 1148
SmlI	CTYRAG	3 cut(s)	75, 311, 347
SmoI	CTYRAG	3 cut(s)	75, 311, 347
Sse9I	AATT	2 cut(s)	789, 914
SseBI	AGGCCT	2 cut(s)	421, 922
SsiI	CCGC	1 cut(s)	983
SspMI	CTAG	5 cut(s)	212, 305, 428, 645, 752
SstI	GAGCTC	2 cut(s)	156, 404
StuI	AGGCCT	2 cut(s)	421, 922
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	958, 1163
TasI	AATT	2 cut(s)	789, 914
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	179, 537
Tru9I	TTAA	2 cut(s)	179, 537
TscAI	CASTG	4 cut(s)	163, 178, 819, 1168
TseFI	GTSAC	4 cut(s)	215, 254, 580, 1163
TseI	GCWGC	2 cut(s)	371, 1131
Tsp45I	GTSAC	4 cut(s)	215, 254, 580, 1163
TspDTI	ATGAA	2 cut(s)	513, 1191
TspRI	CASTG	4 cut(s)	163, 178, 819, 1168
XapI	RAATTY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	4 cut(s)	178, 247, 692, 819
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	5 cut(s)	212, 305, 428, 645, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.