Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Forward (+)

73585514 .. 73597014

Gene Structure 11501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTGGTGGAGTCGCAACCCAATGGCGGTGGTGGGGCGGCGGTCTTGGAGGCAAGGCGGTCGGACTGGTGCAAACTCCGACTTGGGCTGGGAGGGTTGATTCACATGCTAACTTGGTCTTCGGGGCTTGGATATGGCTTGTACGCTCGATGCGGCTGGAGACAAACCAAGTTCGCAGGGCATGTTGGTAGATATCCCAATCTTGGGTCACTATGGGTGGAGAGGCAAGATTCAGCTCAAGTCCTAGCTCTCTCTGAGACATCCCATGAGGTTCTACAAGATTCAACCTACTCTGTGAACCCACCTCCAAAGGTCTCACCTTTCTCGGATGAAACCCTTAAACTGGTGTCTTCTCACTCAGAAACCCTTAAGAAGCTTGGATTTTTGGGGCTCAGAAACATCAATGTGATAGTCACCAACCCAAAGGAGGCAAAACCAAGAACCAGAAAGCTCTCTTCCATTGACCCATTTCCAGCTAGACCAAACCCACTACCCAAAGCCTCAGACCCCCCACTCCACTCCTCTGTTGGCTTCTCTGTTCCTGCCAATGTAGCCAAAAACCCTCAACCTCCACAAGCTCAAGTAGCCTCACCAGCACCAGCCCAAACAGCCTCACCTCCAATCCCTGAAACAGCATCACCCCCAGTCGAAATGTCTTTTCCCGAAGCCCCCGAAATCTCTCCTGTTTACCATCAAGCCACGCCTCCCCCTTTTGCTTACGAATTGCCACCGTGTAATCCGAGAGCCCCGGCACCTGGAATCGGGTTTGTGCATAAACTGTGGTGTGTAGCCAAGCCTACTGTTCCGGTAGACACATTGCAGGAGGCTGTGGACTATGCTTGTGGAGCTGGTGGTGCTGATTGCCAGGAGATTATGCCAAGCGGAAACTGCTACTATCCTGAGTCTGTTGTGGCCCATGCTTCGTATGCTTTCAACAGTTACTGGCAGAAGAACAAGAGGAATGGAGGCACTTGCAGCTTTGGTGGCACTGCTATGCTTATCAACAGTGATCCAAGACCTTTGCAGTCGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

345

Amino Acids

36.99

Weight (kDa)

8.07

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	260 - 332	3.8e-23	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	810
AciI	CCGC	6 cut(s)	27, 38, 41, 58, 153, 882
AclWI	GGATC	1 cut(s)	1004
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	7 cut(s)	26, 203, 204, 343, 427, 755, 761
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	285, 934
AjnI	CCWGG	2 cut(s)	754, 864
AluBI	AGCT	8 cut(s)	236, 248, 376, 451, 476, 578, 848, 978
AluI	AGCT	8 cut(s)	236, 248, 376, 451, 476, 578, 848, 978
Alw26I	GTCTC	3 cut(s)	154, 251, 319
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	1 cut(s)	942
AoxI	GGCC	1 cut(s)	912
ApeKI	GCWGC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	913
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	5 cut(s)	309, 406, 582, 606, 630
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	393, 748
BbsI	GAAGAC	2 cut(s)	111, 342
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	1 cut(s)	699
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	2 cut(s)	756, 866
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	3 cut(s)	154, 251, 319
BfaI	CTAG	2 cut(s)	245, 477
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	39, 154, 976
BlsI	GCNGC	3 cut(s)	40, 155, 977
Bme1390I	CCNGG	3 cut(s)	749, 756, 866
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	3 cut(s)	749, 756, 866
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	140, 644
BmuI	ACTGGG	1 cut(s)	638
BpiI	GAAGAC	2 cut(s)	111, 342
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	222, 564
BpuMI	CCSGG	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 203, 204, 343, 427, 755, 761
Bse1I	ACTGG	4 cut(s)	71, 348, 644, 947
Bse3DI	GCAATG	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	756, 866
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	2 cut(s)	260, 334
BseLI	CCNNNNNNNGG	7 cut(s)	26, 203, 204, 343, 427, 755, 761
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	5 cut(s)	246, 372, 406, 516, 891
BseNI	ACTGG	4 cut(s)	71, 348, 644, 947
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	987
BseYI	CCCAGC	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	914
BshNI	GGYRCC	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	749, 806
BslI	CCNNNNNNNGG	7 cut(s)	26, 203, 204, 343, 427, 755, 761
BsmAI	GTCTC	3 cut(s)	154, 251, 319
BsnI	GGCC	1 cut(s)	914
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	393, 748
Bsp143I	GATC	1 cut(s)	1009
BspACI	CCGC	6 cut(s)	27, 38, 41, 58, 153, 882
BspANI	GGCC	1 cut(s)	914
BspCNI	CTCAG	5 cut(s)	247, 371, 405, 515, 892
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	1004
BspT107I	GGYRCC	1 cut(s)	751
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	815
BsrI	ACTGG	4 cut(s)	71, 348, 644, 947
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	1 cut(s)	1009
Bst2UI	CCWGG	2 cut(s)	756, 866
Bst4CI	ACNGT	5 cut(s)	732, 780, 802, 938, 1007
Bst6I	CTCTTC	1 cut(s)	460
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	5 cut(s)	255, 358, 392, 502, 900
BstF5I	GGATG	2 cut(s)	260, 334
BstKTI	GATC	1 cut(s)	1012
BstMAI	GTCTC	3 cut(s)	154, 251, 319
BstMBI	GATC	1 cut(s)	1009
BstMCI	CGRYCG	1 cut(s)	62
BstNI	CCWGG	2 cut(s)	756, 866
BstNSI	RCATGY	2 cut(s)	109, 185
BstSCI	CCNGG	3 cut(s)	747, 754, 864
BstV1I	GCAGC	1 cut(s)	987
BstV2I	GAAGAC	2 cut(s)	111, 342
BsuRI	GGCC	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	260, 334
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	2 cut(s)	987, 1012
CaiI	CAGNNNCTG	1 cut(s)	942
Cfr13I	GGNCC	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	4 cut(s)	106, 182, 266, 917
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	5 cut(s)	255, 358, 392, 502, 900
DpnI	GATC	1 cut(s)	1011
DpnII	GATC	1 cut(s)	1009
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Eco24I	GRGCYC	2 cut(s)	393, 748
Eco31I	GGTCTC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	754, 864
EcoRV	GATATC	1 cut(s)	194
EcoT38I	GRGCYC	2 cut(s)	393, 748
FaeI	CATG	4 cut(s)	109, 185, 269, 920
FatI	CATG	4 cut(s)	105, 181, 265, 916
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	3 cut(s)	39, 154, 976
FokI	GGATG	2 cut(s)	247, 341
FriOI	GRGCYC	2 cut(s)	393, 748
Fsp4HI	GCNGC	3 cut(s)	39, 154, 976
FspBI	CTAG	2 cut(s)	245, 477
GluI	GCNGC	3 cut(s)	39, 154, 976
GsaI	CCCAGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	914
HapII	CCGG	2 cut(s)	749, 806
Hin1II	CATG	4 cut(s)	109, 185, 269, 920
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	6 cut(s)	11, 100, 230, 281, 759, 902
HpaII	CCGG	2 cut(s)	749, 806
HphI	GGTGA	5 cut(s)	309, 406, 582, 606, 630
Hpy166II	GTNNAC	4 cut(s)	298, 688, 811, 832
Hpy188I	TCNGA	8 cut(s)	64, 80, 256, 328, 361, 395, 505, 741
Hpy188III	TCNNGA	2 cut(s)	662, 899
Hpy8I	GTNNAC	4 cut(s)	298, 688, 811, 832
HpyCH4III	ACNGT	5 cut(s)	732, 780, 802, 938, 1007
HpyCH4V	TGCA	5 cut(s)	72, 772, 820, 975, 1024
HpyF3I	CTNAG	5 cut(s)	255, 358, 392, 502, 900
Hsp92II	CATG	4 cut(s)	109, 185, 269, 920
Kzo9I	GATC	1 cut(s)	1009
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	1 cut(s)	987
LweI	GCATC	2 cut(s)	140, 644
MaeI	CTAG	2 cut(s)	245, 477
MaeIII	GTNAC	3 cut(s)	207, 412, 938
MalI	GATC	1 cut(s)	1011
MboI	GATC	1 cut(s)	1009
MboII	GAAGA	4 cut(s)	111, 342, 447, 961
MhlI	GDGCHC	2 cut(s)	393, 748
MluCI	AATT	1 cut(s)	722
MlyI	GAGTC	2 cut(s)	20, 911
MmeI	TCCRAC	2 cut(s)	42, 103
MseI	TTAA	2 cut(s)	339, 369
MslI	CAYNNNNRTG	2 cut(s)	404, 992
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	749, 806
MspR9I	CCNGG	3 cut(s)	749, 756, 866
MvaI	CCWGG	2 cut(s)	756, 866
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	1 cut(s)	1009
NlaIII	CATG	4 cut(s)	109, 185, 269, 920
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	2 cut(s)	207, 412
NspI	RCATGY	2 cut(s)	109, 185
PfeI	GAWTC	4 cut(s)	100, 230, 281, 759
PkrI	GCNGC	3 cut(s)	40, 155, 977
PleI	GAGTC	2 cut(s)	19, 910
PpsI	GAGTC	2 cut(s)	19, 910
Psp6I	CCWGG	2 cut(s)	754, 864
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	754, 864
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	942
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	404, 992
SaqAI	TTAA	2 cut(s)	339, 369
SatI	GCNGC	3 cut(s)	39, 154, 976
Sau3AI	GATC	1 cut(s)	1009
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	2 cut(s)	20, 911
ScrFI	CCNGG	3 cut(s)	749, 756, 866
SduI	GDGCHC	2 cut(s)	393, 748
SfaNI	GCATC	2 cut(s)	140, 644
SmiMI	CAYNNNNRTG	2 cut(s)	404, 992
SmlI	CTYRAG	3 cut(s)	237, 368, 579
SmoI	CTYRAG	3 cut(s)	237, 368, 579
Sse9I	AATT	1 cut(s)	722
SsiI	CCGC	6 cut(s)	27, 38, 41, 58, 153, 882
SspMI	CTAG	2 cut(s)	245, 477
StyD4I	CCNGG	3 cut(s)	747, 754, 864
TaaI	ACNGT	5 cut(s)	732, 780, 802, 938, 1007
TaqI	TCGA	2 cut(s)	148, 648
TasI	AATT	1 cut(s)	722
TauI	GCSGC	2 cut(s)	41, 156
TfiI	GAWTC	4 cut(s)	100, 230, 281, 759
Tru1I	TTAA	2 cut(s)	339, 369
Tru9I	TTAA	2 cut(s)	339, 369
TscAI	CASTG	2 cut(s)	994, 1012
TseFI	GTSAC	2 cut(s)	207, 412
TseI	GCWGC	1 cut(s)	975
Tsp45I	GTSAC	2 cut(s)	207, 412
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	994, 1012
Vha464I	CTTAAG	1 cut(s)	368
XceI	RCATGY	2 cut(s)	109, 185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	2 cut(s)	245, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.