Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Reverse (-)

20508439 .. 20509073

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTCTCCCCGGAGGCACAAACAGCCTCTCCACCACCACCACAAATAGCCTCGCCACCAGACATGTCTTTCTCCTCAGCGCCAGAAAACCCTCCTTTTGTTGATGAATCCCCTCTTTCTCCGCCTTCCCCTGCCACATTTCCACCCTGCCGCAATCCGATTCCGACACATGTGCCGCCTCCTGCCCCTGCCCCTCAGATGGCGGTGCACAAGCTGTGGTGTGTGGCCAAGCCTACCGTTCCTTCAGACACTCTCCAGGTGGCGATGGATTATGCCTGCGGAGACGGCGATGCTGACTGCAAGGAGATCATGCCGGATGGCAACTGCTACAACCCTGATTCTGTTGTGGCACATGCTTCCTATGCCTTCAACAGCTACTGGCAGAAGAACAAGAGGACCGGAGGGACTTGCAACTTCGATGGCACTGCAATGCTGATCAACAATCGATCCAAGTTATCTTCAATGTCGTTTCGTTCTCACTTGAATGCGTTCGGAGCAGAAACTGAGACTGGTGGCTGTTGTTTTATGATGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

180

Amino Acids

19.18

Weight (kDa)

5.2

Isoelectric Point (pI)

74.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	122, 151, 176, 203, 279
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	63, 169
AgsI	TTSAA	3 cut(s)	370, 462, 484
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	214, 375
AluI	AGCT	2 cut(s)	214, 375
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	276, 500
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	2 cut(s)	378, 503
AoxI	GGCC	1 cut(s)	225
ApaLI	GTGCAC	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	76
BccI	CCATC	4 cut(s)	193, 259, 311, 413
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 407, 441
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	276, 500
BfoI	RGCGCY	1 cut(s)	83
BisI	GCNGC	2 cut(s)	151, 176
BlsI	GCNGC	2 cut(s)	152, 177
Bme1390I	CCNGG	2 cut(s)	11, 257
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	11, 257
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	383, 514
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	90, 209, 495
BseNI	ACTGG	2 cut(s)	383, 514
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	11, 314, 399
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	276, 500
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	306, 435, 446
BspACI	CCGC	5 cut(s)	122, 151, 176, 203, 279
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	89, 208, 496
BspDI	ATCGAT	1 cut(s)	445
BspPI	GGATC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	383, 514
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	306, 435, 446
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	76, 195, 504
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	309, 438, 449
BstMAI	GTCTC	2 cut(s)	276, 500
BstMBI	GATC	3 cut(s)	306, 435, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 285, 362, 494
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	3 cut(s)	67, 173, 356
BstSCI	CCNGG	2 cut(s)	9, 255
BstSLI	GKGCMC	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	445
BtgZI	GCGATG	2 cut(s)	278, 303
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	2 cut(s)	378, 503
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	396
ClaI	ATCGAT	1 cut(s)	445
CviAII	CATG	4 cut(s)	64, 170, 310, 353
CviJI	RGCY	7 cut(s)	26, 50, 214, 227, 232, 375, 516
CviKI_1	RGCY	7 cut(s)	26, 50, 214, 227, 232, 375, 516
DdeI	CTNAG	3 cut(s)	76, 195, 504
DpnI	GATC	3 cut(s)	308, 437, 448
DpnII	GATC	3 cut(s)	306, 435, 446
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	67, 173, 313, 356
FaiI	YATR	7 cut(s)	65, 171, 273, 311, 354, 363, 527
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	4 cut(s)	63, 169, 309, 352
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	151, 176
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	151, 176
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	151, 176
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	3 cut(s)	11, 314, 399
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	67, 173, 313, 356
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	107, 160, 338
HpaII	CCGG	3 cut(s)	11, 314, 399
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	5 cut(s)	159, 165, 198, 247, 494
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	135, 252, 376
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	208, 300, 411, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 285, 362, 494
HpyF3I	CTNAG	3 cut(s)	76, 195, 504
Hsp92II	CATG	4 cut(s)	67, 173, 313, 356
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	306, 435, 446
LmnI	GCTCC	1 cut(s)	494
LweI	GCATC	1 cut(s)	280
MalI	GATC	3 cut(s)	308, 437, 448
MboI	GATC	3 cut(s)	306, 435, 446
MboII	GAAGA	2 cut(s)	397, 450
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	188
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	428, 483
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	3 cut(s)	11, 314, 399
MspR9I	CCNGG	2 cut(s)	11, 257
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	23, 285, 362, 494
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	306, 435, 446
NlaIII	CATG	4 cut(s)	67, 173, 313, 356
NspI	RCATGY	3 cut(s)	67, 173, 356
PciI	ACATGT	2 cut(s)	63, 169
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	107, 160, 338
PkrI	GCNGC	2 cut(s)	152, 177
PscI	ACATGT	2 cut(s)	63, 169
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	396
PstNI	CAGNNNCTG	2 cut(s)	378, 503
RseI	CAYNNNNRTG	2 cut(s)	428, 483
SatI	GCNGC	2 cut(s)	151, 176
Sau3AI	GATC	3 cut(s)	306, 435, 446
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	11, 257
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	216, 261, 377
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	2 cut(s)	428, 483
SsiI	CCGC	5 cut(s)	122, 151, 176, 203, 279
StyD4I	CCNGG	2 cut(s)	9, 255
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	417, 445
TauI	GCSGC	2 cut(s)	153, 178
TfiI	GAWTC	3 cut(s)	107, 160, 338
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	396
XceI	RCATGY	3 cut(s)	67, 173, 356
XmnI	GAANNNNTTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.