RLG00000017609

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009502
Physical Location & Seq
Reverse (-)
19066998 .. 19068618
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017609

Sequence Viewer

Length: 873 bp
ATGGTGAAGATGGTGTGGCTTATCTTCTTCCAGCTTCTGTTTCTGGGTCTTTCTGGTGCAAGGCAAGAATCAGCTCAAGTCCTAGCTCTCCATGAGGTTCTACAAGATTCAACCTACTCTGTGAACCCACCTCCAAAGGTCTCACCTTTCTCTGATGAAACCCTTAAACTGGTGTCTTCTCACTCAGAAACCCTTAAAAAGCTTGGATTTTTGGGGCTCAGAAACATCAATGTGATAGTCACCAATCCAAAGGAGGCAAAACCAAGAACCAGAAAGCTCTCTTCCATCGACCCATTTCCAGCTAGACCAAACCCACTACCCAAAACCTCAGACCCCCCACTCCACTCCTCTGTTGGCTTCTCTGTCCCTGCCAATGTAGCCAAAAACCCTCAACCTCCACAAGCTCAAGTAGCCTCACCAGCACCAGCCCAAACAGCCTCACCTCCAATCCCTGAAACAGCATCACCCCCAGTCGAAATGTCTTTTCCCGAAGCCCCGGAAATCTCTCCTGTTTACCATCAAGCCACCCCTCCCCCTTTTGCTTACGAATTGCCACCGTGTAATCCGAGAGCCCCGGCACCTGGAATCGGGTTTGTGCATAAACTGTGGTGTGTAGCCAAGCCTACTGTTCCGGCAGACACATTGCAGGAGGCTGTGGACTATGCTTGTGGAGCTGGTGGTGCTGATTGCCAGGAGATTATGCCAAGCGGAAACTGCTACTATCCTGAGTCTGTTGTGGCCCATGCTTCGTATGCTTTCAACAGCTACTGGCAGAAGAACAAGAGGAATGGAGGCACTTGCAGCTTTGGTGGCACTGCTATGCTTATCAACAGTGATCCAAGTTATCAGCTATGCCGTTTTGTTATCACCTAA

Protein Analysis

291

Amino Acids

31.25

Weight (kDa)

7.6

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 202 - 274 1.3e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AciI CCGC 1 cut(s) 708
AclWI GGATC 1 cut(s) 830
AfiI CCNNNNNNNGG 3 cut(s) 169, 581, 587
AgsI TTSAA 2 cut(s) 111, 760
AjnI CCWGG 2 cut(s) 580, 690
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 830
AlwNI CAGNNNCTG 2 cut(s) 37, 768
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 1 cut(s) 801
AspS9I GGNCC 1 cut(s) 739
AsuC2I CCSGG 2 cut(s) 497, 575
AsuHPI GGTGA 7 cut(s) 16, 135, 232, 408, 432, 456, 859
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 219, 574
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 813
BccI CCATC 3 cut(s) 4, 293, 525
BceAI ACGGC 1 cut(s) 840
BciT130I CCWGG 2 cut(s) 582, 692
BcnI CCSGG 2 cut(s) 497, 575
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 83, 303
BisI GCNGC 1 cut(s) 802
BlsI GCNGC 1 cut(s) 803
Bme1390I CCNGG 4 cut(s) 497, 575, 582, 692
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 4 cut(s) 497, 575, 582, 692
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 60, 390
BpuMI CCSGG 2 cut(s) 497, 575
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 495, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 581, 587
Bse1I ACTGG 3 cut(s) 174, 470, 773
Bse3DI GCAATG 1 cut(s) 641
BseBI CCWGG 2 cut(s) 582, 692
BseDI CCNNGG 2 cut(s) 495, 573
BseLI CCNNNNNNNGG 3 cut(s) 169, 581, 587
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 4 cut(s) 198, 232, 342, 717
BseNI ACTGG 3 cut(s) 174, 470, 773
BseRI GAGGAG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 813
BshFI GGCC 1 cut(s) 740
BshNI GGYRCC 1 cut(s) 577
BsiSI CCGG 3 cut(s) 497, 575, 632
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 169, 581, 587
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 740
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 219, 574
Bsp143I GATC 1 cut(s) 835
BspACI CCGC 1 cut(s) 708
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 4 cut(s) 197, 231, 341, 718
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 1 cut(s) 830
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 3 cut(s) 174, 470, 773
BssECI CCNNGG 2 cut(s) 495, 573
BssMI GATC 1 cut(s) 835
Bst2UI CCWGG 2 cut(s) 582, 692
Bst4CI ACNGT 4 cut(s) 558, 606, 628, 833
Bst6I CTCTTC 1 cut(s) 286
BstDEI CTNAG 4 cut(s) 184, 218, 328, 726
BstKTI GATC 1 cut(s) 838
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 835
BstNI CCWGG 2 cut(s) 582, 692
BstSCI CCNGG 4 cut(s) 495, 573, 580, 690
BstV1I GCAGC 1 cut(s) 813
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 740
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 813, 838
CaiI CAGNNNCTG 2 cut(s) 37, 768
Cfr13I GGNCC 1 cut(s) 739
CviAII CATG 2 cut(s) 92, 743
DdeI CTNAG 4 cut(s) 184, 218, 328, 726
DpnI GATC 1 cut(s) 837
DpnII GATC 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 219, 574
Eco31I GGTCTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 580, 690
EcoT38I GRGCYC 2 cut(s) 219, 574
FaeI CATG 2 cut(s) 95, 746
FaiI YATR 8 cut(s) 93, 600, 663, 701, 744, 753, 821, 853
FaqI GGGAC 1 cut(s) 350
FatI CATG 2 cut(s) 91, 742
Fnu4HI GCNGC 1 cut(s) 802
FriOI GRGCYC 2 cut(s) 219, 574
Fsp4HI GCNGC 1 cut(s) 802
FspBI CTAG 2 cut(s) 83, 303
GluI GCNGC 1 cut(s) 802
HaeIII GGCC 1 cut(s) 740
HapII CCGG 3 cut(s) 497, 575, 632
Hin1II CATG 2 cut(s) 95, 746
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 68, 107, 585, 728
HpaII CCGG 3 cut(s) 497, 575, 632
HphI GGTGA 7 cut(s) 16, 135, 232, 408, 432, 456, 859
Hpy166II GTNNAC 3 cut(s) 124, 514, 658
Hpy188I TCNGA 5 cut(s) 154, 187, 221, 331, 567
Hpy188III TCNNGA 2 cut(s) 488, 725
Hpy8I GTNNAC 3 cut(s) 124, 514, 658
HpyCH4III ACNGT 4 cut(s) 558, 606, 628, 833
HpyCH4V TGCA 4 cut(s) 59, 598, 646, 801
HpyF3I CTNAG 4 cut(s) 184, 218, 328, 726
Hsp92II CATG 2 cut(s) 95, 746
Kzo9I GATC 1 cut(s) 835
LmnI GCTCC 1 cut(s) 671
Lsp1109I GCAGC 1 cut(s) 813
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 83, 303
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 837
MboI GATC 1 cut(s) 835
MboII GAAGA 6 cut(s) 16, 19, 19, 168, 273, 787
MhlI GDGCHC 2 cut(s) 219, 574
MluCI AATT 1 cut(s) 548
MlyI GAGTC 1 cut(s) 737
MseI TTAA 2 cut(s) 165, 195
MslI CAYNNNNRTG 2 cut(s) 230, 818
MspI CCGG 3 cut(s) 497, 575, 632
MspR9I CCNGG 4 cut(s) 497, 575, 582, 692
MvaI CCWGG 2 cut(s) 582, 692
NciI CCSGG 2 cut(s) 497, 575
NdeII GATC 1 cut(s) 835
NlaIII CATG 2 cut(s) 95, 746
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 68, 107, 585
PkrI GCNGC 1 cut(s) 803
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 580, 690
PspGI CCWGG 2 cut(s) 580, 690
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 739
PstNI CAGNNNCTG 2 cut(s) 37, 768
RseI CAYNNNNRTG 2 cut(s) 230, 818
SaqAI TTAA 2 cut(s) 165, 195
SatI GCNGC 1 cut(s) 802
Sau3AI GATC 1 cut(s) 835
Sau96I GGNCC 1 cut(s) 739
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 4 cut(s) 497, 575, 582, 692
SduI GDGCHC 2 cut(s) 219, 574
SfaNI GCATC 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 230, 818
SmlI CTYRAG 2 cut(s) 75, 405
SmoI CTYRAG 2 cut(s) 75, 405
Sse9I AATT 1 cut(s) 548
SsiI CCGC 1 cut(s) 708
SspMI CTAG 2 cut(s) 83, 303
StyD4I CCNGG 4 cut(s) 495, 573, 580, 690
TaaI ACNGT 4 cut(s) 558, 606, 628, 833
TaqI TCGA 2 cut(s) 288, 474
TasI AATT 1 cut(s) 548
TfiI GAWTC 3 cut(s) 68, 107, 585
Tru1I TTAA 2 cut(s) 165, 195
Tru9I TTAA 2 cut(s) 165, 195
TscAI CASTG 2 cut(s) 820, 838
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 801
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 2 cut(s) 820, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 2 cut(s) 83, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.