Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009624.1

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Reverse (-)

29186 .. 30998

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009624.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggtgtggcttatcttcttccagcttctgtttctgggtctttctggtgcaaggcaagaatcagctcaagtcctaactctctctgagacatcccatgaggttctacatgattcaacctactctgtgaacccacctccaaaggtctcacctttctctgatgaaacccttaaactggtgtcttctcactcagaaacccttaaaaagcttggatttttggggctcatgaacatcaatgttatagtcaccaacccaaaggaggcaaaaccaagaaccagaaagctctcttccattgacccatttccagctagaccaaacccactacccaaaacctcagaccccccactccactcctctgttggcttctctgttcctgccaatgtagccaaaaaccctcaacctccacaagctcaagtagcctcaccagcaccagcccaaacagcctcacctccaatccctgaaacagcatcacccccagtcgaaatgtcttttcccgaagcccccgaaatctctcctgtttaccatcaagccacccctcccccttttgcttacgaattgccaccgtgtaatccgagagccccggcacctggaattgttgtgcataaactgtggtgtgtagccaagcctactgttccggcagacacattgcaggaggctgtggactatgcttgtggagctggtggtgctgattgccaggagattatgccaagcggaaactgctactatcccgagtctgttgtggcccatgcttcgtatgctttcaacagctactggcagaagaacaagaggaatggaggcacttgcagctttggtggcactgctatgcttatcaacagtgatccaagttatcaactatgccgttttgttatcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

290

Amino Acids

31.21

Weight (kDa)

6.37

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	172, 256, 584
AgsI	TTSAA	2 cut(s)	114, 760
AjnI	CCWGG	2 cut(s)	583, 690
AluBI	AGCT	9 cut(s)	25, 65, 205, 280, 305, 407, 674, 765, 804
AluI	AGCT	9 cut(s)	25, 65, 205, 280, 305, 407, 674, 765, 804
Alw26I	GTCTC	2 cut(s)	80, 148
AlwI	GGATC	1 cut(s)	830
AlwNI	CAGNNNCTG	2 cut(s)	28, 768
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	1 cut(s)	801
AspS9I	GGNCC	1 cut(s)	739
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	6 cut(s)	138, 235, 411, 435, 459, 859
AvaI	CYCGRG	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	222, 577
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	813
BccI	CCATC	1 cut(s)	528
BceAI	ACGGC	1 cut(s)	840
BciT130I	CCWGG	2 cut(s)	585, 692
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	80, 148
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	802
BlsI	GCNGC	1 cut(s)	803
Bme1390I	CCNGG	3 cut(s)	578, 585, 692
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	578, 585, 692
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	51, 393
BpuMI	CCSGG	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 256, 584
Bse1I	ACTGG	3 cut(s)	177, 473, 773
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	585, 692
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	172, 256, 584
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	3 cut(s)	75, 201, 345
BseNI	ACTGG	3 cut(s)	177, 473, 773
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	813
BshFI	GGCC	1 cut(s)	740
BshNI	GGYRCC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	2 cut(s)	578, 632
BslI	CCNNNNNNNGG	3 cut(s)	172, 256, 584
BsmAI	GTCTC	2 cut(s)	80, 148
BsnI	GGCC	1 cut(s)	740
Bso31I	GGTCTC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	222, 577
Bsp143I	GATC	1 cut(s)	835
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	3 cut(s)	76, 200, 344
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	177, 473, 773
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	1 cut(s)	835
Bst2UI	CCWGG	2 cut(s)	585, 692
Bst4CI	ACNGT	4 cut(s)	561, 606, 628, 833
Bst6I	CTCTTC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	84, 187, 331
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	2 cut(s)	80, 148
BstMBI	GATC	1 cut(s)	835
BstNI	CCWGG	2 cut(s)	585, 692
BstSCI	CCNGG	3 cut(s)	576, 583, 690
BstV1I	GCAGC	1 cut(s)	813
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	813, 838
CaiI	CAGNNNCTG	2 cut(s)	28, 768
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	739
CviAII	CATG	4 cut(s)	95, 107, 223, 743
DdeI	CTNAG	3 cut(s)	84, 187, 331
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	222, 577
Eco31I	GGTCTC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	583, 690
EcoT38I	GRGCYC	2 cut(s)	222, 577
FaeI	CATG	4 cut(s)	98, 110, 226, 746
FatI	CATG	4 cut(s)	94, 106, 222, 742
Fnu4HI	GCNGC	1 cut(s)	802
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	222, 577
Fsp4HI	GCNGC	1 cut(s)	802
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	802
HaeIII	GGCC	1 cut(s)	740
HapII	CCGG	2 cut(s)	578, 632
Hin1II	CATG	4 cut(s)	98, 110, 226, 746
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	59, 110, 728
HpaII	CCGG	2 cut(s)	578, 632
HphI	GGTGA	6 cut(s)	138, 235, 411, 435, 459, 859
Hpy166II	GTNNAC	3 cut(s)	127, 517, 658
Hpy188I	TCNGA	5 cut(s)	85, 157, 190, 334, 570
Hpy188III	TCNNGA	3 cut(s)	223, 491, 725
Hpy8I	GTNNAC	3 cut(s)	127, 517, 658
HpyCH4III	ACNGT	4 cut(s)	561, 606, 628, 833
HpyCH4V	TGCA	4 cut(s)	50, 598, 646, 801
HpyF3I	CTNAG	3 cut(s)	84, 187, 331
Hsp92II	CATG	4 cut(s)	98, 110, 226, 746
Kzo9I	GATC	1 cut(s)	835
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	1 cut(s)	813
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	5 cut(s)	7, 10, 171, 276, 787
MhlI	GDGCHC	2 cut(s)	222, 577
MluCI	AATT	2 cut(s)	551, 588
MlyI	GAGTC	1 cut(s)	737
MseI	TTAA	2 cut(s)	168, 198
MslI	CAYNNNNRTG	1 cut(s)	818
MspI	CCGG	2 cut(s)	578, 632
MspR9I	CCNGG	3 cut(s)	578, 585, 692
MvaI	CCWGG	2 cut(s)	585, 692
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	4 cut(s)	98, 110, 226, 746
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	59, 110
PkrI	GCNGC	1 cut(s)	803
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	583, 690
PspGI	CCWGG	2 cut(s)	583, 690
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	739
PstNI	CAGNNNCTG	2 cut(s)	28, 768
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	2 cut(s)	168, 198
SatI	GCNGC	1 cut(s)	802
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	1 cut(s)	739
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	3 cut(s)	578, 585, 692
SduI	GDGCHC	2 cut(s)	222, 577
SfaNI	GCATC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	66, 408
SmoI	CTYRAG	2 cut(s)	66, 408
Sse9I	AATT	2 cut(s)	551, 588
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	576, 583, 690
TaaI	ACNGT	4 cut(s)	561, 606, 628, 833
TaqI	TCGA	1 cut(s)	477
TasI	AATT	2 cut(s)	551, 588
TfiI	GAWTC	2 cut(s)	59, 110
Tru1I	TTAA	2 cut(s)	168, 198
Tru9I	TTAA	2 cut(s)	168, 198
TscAI	CASTG	2 cut(s)	820, 838
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	801
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	174, 239
TspRI	CASTG	2 cut(s)	820, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.