Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009502

Physical Location & Seq

Genomic Coordinates Forward (+)

3132865 .. 3133984

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTGAAGATGGTGTGGCTCATCTTCTTCCAGCTTATGTTTCTGGGTGCAAGGCAAGAATCGGCTCAAGTCCTAACTCTCTTTGCCACATCCCATGAGGTGCTTCAAGGTTCAAGTCTTCCCGTAGCTGTTTCTGTGAGAGAGCTCAGTGAGGTATCAACCAGTGTGTTAATGGCTGAAACTTGGCTCAGAACCCATGTTCTAGCCCACTACCCTTCCATTCCCATCACCACCATTCTTGTGGGTGACACCATTCTCTGCTCTGAACATGACAACAATCTGAGCTTGGTGTTACCATCCCTCAAGAACATCCATCACTCTCTCACAAGGTGGGGTCTTGAGAAAGACATCAAAGTCTCTGCTGCTCTCTCTTCTGGTTGTTTGGACCAGAGCTCTGAGAGGTTTGTGAGGCCTATTCTAGAGTTTCTCCAGGCCACAAACTCAACCTACTCTGTGAACCCACCTCCAAAGGTCTCGCCTTTCTCTCATGAAACCCTTCGACTGGTGTCTTCTCACTCAGAAACCCTTAAAAAGCTTGGATTTTTGGGGCTCAGAAACATCAATGTGATTGTCACCAACCAGAAAGAGGCAAAACCAAGAACCAGAAAGCTCTCTTCCATACCAAACCCACAACTCATAACCTCAGACCCCCCACTCCACTCCTCTGTTGGCTTCTCTGTTCCTGCCAATGTAGCCAAAAACCCTCAACCCCCACAAGCCGAAATGGCATCACCATCACCTACCCAAACAACCTCACTTCCAATGTCTCCTGTTTACCATCAAGCCTCTCCTGCCCCTTTTGCTTACAAAATGCCACCCTGTAGAGCCCCAGCGCCTGAGTTTAGCCCTGTGCATAAGCTGTGGTGTGTGGCCAAGCCTACCGTTCGGCAGAGACATTGCAGGAGGCGGTGGACTATGCTTGTGGAGCTGGTGGTGCTGATTGCAGATTTTGCCAAGCGGAAACTGCTACCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

326

Amino Acids

36.08

Weight (kDa)

9.71

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	31 - 158	1.7e-11	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67460 AT5G67460
fragaria_vesca	FvH4_1g17490 FvH4_1g17490 FvH4_3g05400
malus_domestica	MD02G1183900.v1.1 MD15G1295500.v1.1
prunus_persica	Prupe.6G222300_v2.0.a1 Prupe.6G222300_v2.0.a1
pyrus_communis	pycom02g14930 pycom15g25840
rosa_chinensis	RchiOBHm_Chr2g0107721
rosa_laevigata	RLG00000017609
rosa_multiflora	Rmu_sc0009624.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136010
rosa_rugosa	Rorug02G0147100 Rorug02G0147100
rosa_samantha	Rh2AG196600 Rh2BG209300 Rh2CG201500 Rh2DG204500
rosa_wichuraiana	Rw2G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AciI	CCGC	2 cut(s)	907, 958
AcoI	YGGCCR	1 cut(s)	870
AdeI	CACNNNGTG	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	502, 586
AgsI	TTSAA	3 cut(s)	7, 107, 114
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	9 cut(s)	34, 128, 145, 285, 393, 535, 610, 859, 928
AluI	AGCT	9 cut(s)	34, 128, 145, 285, 393, 535, 610, 859, 928
Alw21I	GWGCWC	2 cut(s)	147, 395
Alw26I	GTCTC	4 cut(s)	361, 478, 771, 886
AlwNI	CAGNNNCTG	1 cut(s)	836
AoxI	GGCC	3 cut(s)	410, 432, 870
ApeKI	GCWGC	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	5 cut(s)	220, 257, 565, 723, 729
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	872
BanII	GRGCYC	4 cut(s)	147, 395, 552, 829
BbsI	GAAGAC	2 cut(s)	110, 501
Bbv12I	GWGCWC	2 cut(s)	147, 395
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	6 cut(s)	4, 233, 304, 321, 742, 786
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	4 cut(s)	361, 478, 771, 886
BfaI	CTAG	2 cut(s)	203, 419
BfmI	CTRYAG	1 cut(s)	820
BfoI	RGCGCY	1 cut(s)	836
BglI	GCCNNNNNGGC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	737
BoxI	GACNNNNGTC	1 cut(s)	505
BpiI	GAAGAC	2 cut(s)	110, 501
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	3 cut(s)	51, 287, 359
BsaI	GGTCTC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 586
Bse1I	ACTGG	2 cut(s)	162, 507
Bse3DI	GCAATG	1 cut(s)	895
BseBI	CCWGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	89, 296, 309
BseLI	CCNNNNNNNGG	2 cut(s)	502, 586
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	8 cut(s)	160, 202, 272, 387, 531, 565, 657, 828
BseNI	ACTGG	2 cut(s)	162, 507
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	829
BshFI	GGCC	3 cut(s)	412, 434, 872
BsiHKAI	GWGCWC	2 cut(s)	147, 395
BslI	CCNNNNNNNGG	2 cut(s)	502, 586
BsmAI	GTCTC	4 cut(s)	361, 478, 771, 886
BsnI	GGCC	3 cut(s)	412, 434, 872
Bso31I	GGTCTC	1 cut(s)	478
Bsp1286I	GDGCHC	4 cut(s)	147, 395, 552, 829
BspACI	CCGC	2 cut(s)	907, 958
BspANI	GGCC	3 cut(s)	412, 434, 872
BspCNI	CTCAG	8 cut(s)	159, 201, 273, 388, 530, 564, 656, 829
BspHI	TCATGA	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	162, 507
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	2 cut(s)	376, 619
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstDEI	CTNAG	8 cut(s)	146, 188, 281, 396, 517, 551, 643, 837
BstF5I	GGATG	3 cut(s)	89, 296, 309
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	835
BstMAI	GTCTC	4 cut(s)	361, 478, 771, 886
BstMWI	GCNNNNNNNGC	8 cut(s)	692, 725, 791, 800, 925, 934, 950, 964
BstNI	CCWGG	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	820
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	110, 501
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	412, 434, 872
BtsCI	GGATG	3 cut(s)	89, 296, 309
BtsIMutI	CAGTG	2 cut(s)	154, 169
CaiI	CAGNNNCTG	1 cut(s)	836
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	4 cut(s)	95, 197, 269, 488
DdeI	CTNAG	8 cut(s)	146, 188, 281, 396, 517, 551, 643, 837
DraIII	CACNNNGTG	1 cut(s)	330
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	376, 619
EarI	CTCTTC	2 cut(s)	376, 619
Ecl136II	GAGCTC	2 cut(s)	145, 393
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	4 cut(s)	147, 395, 552, 829
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	2 cut(s)	145, 393
EcoICRI	GAGCTC	2 cut(s)	145, 393
EcoRII	CCWGG	1 cut(s)	429
EcoT38I	GRGCYC	4 cut(s)	147, 395, 552, 829
FaeI	CATG	4 cut(s)	98, 200, 272, 491
FaiI	YATR	9 cut(s)	38, 96, 198, 270, 489, 620, 638, 855, 917
FatI	CATG	4 cut(s)	94, 196, 268, 487
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	3 cut(s)	76, 283, 296
FriOI	GRGCYC	4 cut(s)	147, 395, 552, 829
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	203, 419
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	833
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	412, 434, 872
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	4 cut(s)	98, 200, 272, 491
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	5 cut(s)	220, 257, 565, 723, 729
Hpy166II	GTNNAC	3 cut(s)	457, 775, 912
Hpy188I	TCNGA	7 cut(s)	191, 265, 282, 397, 520, 554, 646
Hpy188III	TCNNGA	4 cut(s)	304, 338, 419, 488
Hpy8I	GTNNAC	3 cut(s)	457, 775, 912
HpyAV	CCTTC	2 cut(s)	225, 506
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4V	TGCA	4 cut(s)	50, 853, 900, 944
HpyF10VI	GCNNNNNNNGC	8 cut(s)	692, 725, 791, 800, 925, 934, 950, 964
HpyF3I	CTNAG	8 cut(s)	146, 188, 281, 396, 517, 551, 643, 837
Hsp92II	CATG	4 cut(s)	98, 200, 272, 491
HspAI	GCGC	1 cut(s)	833
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	2 cut(s)	203, 419
MaeIII	GTNAC	3 cut(s)	245, 291, 571
MboII	GAAGA	7 cut(s)	16, 19, 19, 110, 363, 501, 606
MhlI	GDGCHC	4 cut(s)	147, 395, 552, 829
MlsI	TGGCCA	1 cut(s)	872
MluNI	TGGCCA	1 cut(s)	872
Mox20I	TGGCCA	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	2 cut(s)	170, 528
MslI	CAYNNNNRTG	2 cut(s)	239, 563
Msp20I	TGGCCA	1 cut(s)	872
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	8 cut(s)	692, 725, 791, 800, 925, 934, 950, 964
NlaIII	CATG	4 cut(s)	98, 200, 272, 491
NmuCI	GTSAC	2 cut(s)	245, 571
PagI	TCATGA	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	505
Psp124BI	GAGCTC	2 cut(s)	147, 395
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	836
RseI	CAYNNNNRTG	2 cut(s)	239, 563
SacI	GAGCTC	2 cut(s)	147, 395
SaqAI	TTAA	2 cut(s)	170, 528
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	4 cut(s)	147, 395, 552, 829
SfaNI	GCATC	1 cut(s)	737
SfcI	CTRYAG	1 cut(s)	820
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	239, 563
SmlI	CTYRAG	3 cut(s)	66, 302, 338
SmoI	CTYRAG	3 cut(s)	66, 302, 338
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	907, 958
SspMI	CTAG	2 cut(s)	203, 419
SstI	GAGCTC	2 cut(s)	147, 395
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	883
TaqI	TCGA	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	170, 528
Tru9I	TTAA	2 cut(s)	170, 528
TscAI	CASTG	2 cut(s)	154, 169
TseFI	GTSAC	2 cut(s)	245, 571
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	245, 571
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	154, 169
VpaK11BI	GGWCC	1 cut(s)	385
XbaI	TCTAGA	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	3 cut(s)	169, 238, 665
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	203, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.