ATCG00500

Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0016119
Physical Location & Seq
Forward (+)
57075 .. 58541
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00500.1

Sequence Viewer

Length: 1467 bp
ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGTGAGCTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCGTTTTATATATGATATGGATAAAAACTTTTATGGTTGGGATGAGCGTTCTAGTTATTCTTCTAGTTATTCCAATAATGTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTTCATATCGGATGACACCTTTTTTGTTAGGGATAGTAATAAGAATAGTTATTCTATATTTTTTGATAAAAAAAAAAAAATTTTTGAGATTGACAATGATTTTAGTGACCTAGAAAAATTTTTTTATAGTTATTGTAGTTCTAGTTATCTAAATAATAGATCTAAAGGTGACAACGATCTGCACTATGATCCTTACATTAAGGATACTAAATATAATTGTACTAATCACATTAATAGTTGCATTGATTCTTATTTTCGTTCTTACATCTGTATTGATAATAACTTTTTAATCGATAGTAATAATTTTAATGAAAGTTACATTTATAATTTCATTTGTAGTGAAAGCGGAAAGATTCGTGAAAGTAAAAATTACAAGATAAGAACTAATAGGAATCGTAGTAATTTAATAAGTTCTAAGGATTTCGATATAACTCAAAACTACAATCAATTGTGGATTCAATGCGACAATTGTTATGGATTAATGTATAAGAAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATGAGTAGTTCAGAAAGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAAGACATGGTCTCTGCGGATCCCATTAAATTTCATTCGAAGGAGGAACCTTATAAAAACCGTATTGACTCTGCGCAAAAAACTACAGGATTGACTGACGCTGTTCAAACAGGTACAGGTCAACTAAACGGTATTCCGGTAGCCCTTGGGGTTATGGATTTTCGGTTTATGGGGGGTAGTATGGGATCCGTAGTAGGCGAAAAAATAACTCGTTTGATCGAGTATGCTACCAATCAATGTTTACCTCTTATTTTAGTGTGTTCTTCCGGAGGAGCACGAATGCAAGAAGGAAGTTTAAGTTTGATGCAAATGGCTAAAATTTCTTCGGTTTTATGTGATTATCAATCAAGTAAAAAGTTATTCTATATATCAATTCTTACATCTCCTACTACCGGTGGAGTGACAGCTAGTTTTGGTATGTTGGGGGATATCATTATTGCCGAACCCTATGCCTATATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTGAAAAAAGCCGTGCCTGAAGGTTCACAAGCGGCTGAATCTTTATTACGTAAGGGCTTATTGGATGCAATTGTACCACGTAATCTTTTAAAAGGTGTTCTGAGCGAGTTATTTCAGCTCCATGCTTTTTTTCCTTTGAACACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00195 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00195 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212
Pfam Domains
Protein Families
Carboxyl_trans PSI_8

Protein Analysis

488

Amino Acids

55.61

Weight (kDa)

5.9

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carboxyl_trans PF01039 286 - 442 2.3e-19 Carboxyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 555, 879
Acc16I TGCGCA 1 cut(s) 900
AccIII TCCGGA 1 cut(s) 1091
AciI CCGC 4 cut(s) 576, 842, 1292, 1349
AclWI GGATC 6 cut(s) 413, 794, 839, 852, 1005, 1018
AcsI RAATTY 4 cut(s) 309, 347, 854, 1143
AcuI CTGAAG 1 cut(s) 1356
AfaI GTAC 4 cut(s) 451, 808, 940, 1392
AfiI CCNNNNNNNGG 1 cut(s) 1217
AgeI ACCGGT 1 cut(s) 1217
AgsI TTSAA 7 cut(s) 19, 689, 763, 932, 1310, 1321, 1456
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 5 cut(s) 61, 213, 790, 1232, 1435
AluI AGCT 5 cut(s) 61, 213, 790, 1232, 1435
Alw21I GWGCWC 1 cut(s) 1102
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 6 cut(s) 413, 794, 839, 852, 1005, 1018
Aor13HI TCCGGA 1 cut(s) 1091
ApoI RAATTY 4 cut(s) 309, 347, 854, 1143
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AseI ATTAAT 2 cut(s) 462, 710
AsiGI ACCGGT 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 901
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 68, 104, 410
AsuII TTCGAA 1 cut(s) 863
BamHI GGATCC 2 cut(s) 844, 1010
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 1102
BceAI ACGGC 1 cut(s) 1313
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 1 cut(s) 90
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 5 cut(s) 168, 180, 341, 372, 1233
BfmI CTRYAG 1 cut(s) 909
BfuI GTATCC 1 cut(s) 427
BglII AGATCT 1 cut(s) 389
BisI GCNGC 1 cut(s) 1350
BlsI GCNGC 1 cut(s) 1351
Bme1390I CCNGG 2 cut(s) 90, 804
BmiI GGNNCC 3 cut(s) 846, 873, 1012
BmrFI CCNGG 2 cut(s) 90, 804
BmsI GCATC 2 cut(s) 1119, 1372
BpiI GAAGAC 1 cut(s) 834
Bpu14I TTCGAA 1 cut(s) 863
BpuMI CCSGG 1 cut(s) 804
Bsa29I ATCGAT 1 cut(s) 522
BsaAI YACGTR 2 cut(s) 1367, 1397
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 2 cut(s) 216, 970
BsaWI WCCGGW 3 cut(s) 961, 1091, 1217
Bsc4I CCNNNNNNNGG 1 cut(s) 1217
Bse118I RCCGGY 1 cut(s) 1217
Bse3DI GCAATG 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 1091
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 216, 970
BseGI GGATG 4 cut(s) 163, 247, 829, 1387
BseLI CCNNNNNNNGG 1 cut(s) 1217
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 1409
BseRI GAGGAG 1 cut(s) 1110
BsgI GTGCAG 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 1217
BshVI ATCGAT 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 1102
BsiSI CCGG 4 cut(s) 803, 962, 1092, 1218
BslI CCNNNNNNNGG 1 cut(s) 1217
BsmAI GTCTC 1 cut(s) 841
BsmI GAATGC 1 cut(s) 1110
Bso31I GGTCTC 1 cut(s) 841
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 1102
Bsp13I TCCGGA 1 cut(s) 1091
Bsp143I GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
BspACI CCGC 4 cut(s) 576, 842, 1292, 1349
BspCNI CTCAG 1 cut(s) 1410
BspDI ATCGAT 1 cut(s) 522
BspEI TCCGGA 1 cut(s) 1091
BspLI GGNNCC 3 cut(s) 846, 873, 1012
BspPI GGATC 6 cut(s) 413, 794, 839, 852, 1005, 1018
BspT104I TTCGAA 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 841
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 1217
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 2 cut(s) 216, 970
BssMI GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
BssT1I CCWWGG 2 cut(s) 216, 970
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 3 cut(s) 119, 887, 956
BstBAI YACGTR 2 cut(s) 1367, 1397
BstBI TTCGAA 1 cut(s) 863
BstDEI CTNAG 4 cut(s) 33, 62, 645, 1418
BstF5I GGATG 4 cut(s) 163, 247, 829, 1387
BstHHI GCGC 1 cut(s) 901
BstKTI GATC 8 cut(s) 202, 392, 409, 421, 802, 847, 1013, 1044
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
BstMWI GCNNNNNNNGC 1 cut(s) 1283
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 88, 802
BstSFI CTRYAG 1 cut(s) 909
BstSNI TACGTA 1 cut(s) 1367
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 3 cut(s) 389, 844, 1010
BstYI RGATCY 3 cut(s) 389, 844, 1010
Bsu15I ATCGAT 1 cut(s) 522
BsuI GTATCC 1 cut(s) 427
BsuTUI ATCGAT 1 cut(s) 522
BtsCI GGATG 4 cut(s) 163, 247, 829, 1387
CfoI GCGC 1 cut(s) 901
Cfr10I RCCGGY 1 cut(s) 1217
ClaI ATCGAT 1 cut(s) 522
CseI GACGC 1 cut(s) 932
Csp6I GTAC 4 cut(s) 450, 807, 939, 1391
CspAI ACCGGT 1 cut(s) 1217
CviAII CATG 2 cut(s) 832, 1439
CviQI GTAC 4 cut(s) 450, 807, 939, 1391
DdeI CTNAG 4 cut(s) 33, 62, 645, 1418
DpnI GATC 8 cut(s) 201, 391, 408, 420, 801, 846, 1012, 1043
DpnII GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
DraI TTTAAA 1 cut(s) 1407
Eco105I TACGTA 1 cut(s) 1367
Eco130I CCWWGG 2 cut(s) 216, 970
Eco31I GGTCTC 1 cut(s) 841
Eco32I GATATC 1 cut(s) 1255
Eco57I CTGAAG 1 cut(s) 1356
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 1255
EcoT14I CCWWGG 2 cut(s) 216, 970
ErhI CCWWGG 2 cut(s) 216, 970
FaeI CATG 2 cut(s) 835, 1442
FatI CATG 2 cut(s) 831, 1438
FauI CCCGC 1 cut(s) 1285
Fnu4HI GCNGC 1 cut(s) 1350
FokI GGATG 4 cut(s) 170, 254, 836, 1394
Fsp4HI GCNGC 1 cut(s) 1350
FspBI CTAG 5 cut(s) 168, 180, 341, 372, 1233
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 1 cut(s) 900
GluI GCNGC 1 cut(s) 1350
HapII CCGG 4 cut(s) 803, 962, 1092, 1218
HgaI GACGC 1 cut(s) 932
HhaI GCGC 1 cut(s) 901
Hin1II CATG 2 cut(s) 835, 1442
Hin6I GCGC 1 cut(s) 899
HinP1I GCGC 1 cut(s) 899
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HinfI GANTC 8 cut(s) 476, 583, 622, 685, 783, 814, 893, 1355
HpaII CCGG 4 cut(s) 803, 962, 1092, 1218
HphI GGTGA 3 cut(s) 68, 104, 410
Hpy166II GTNNAC 5 cut(s) 743, 752, 947, 1067, 1343
Hpy188I TCNGA 3 cut(s) 241, 778, 1419
Hpy188III TCNNGA 3 cut(s) 113, 587, 1092
Hpy8I GTNNAC 5 cut(s) 743, 752, 947, 1067, 1343
HpyAV CCTTC 3 cut(s) 859, 1106, 1331
HpyCH4III ACNGT 3 cut(s) 119, 887, 956
HpyCH4IV ACGT 2 cut(s) 1366, 1396
HpyCH4V TGCA 6 cut(s) 412, 471, 1108, 1132, 1286, 1385
HpyF10VI GCNNNNNNNGC 1 cut(s) 1283
HpyF3I CTNAG 4 cut(s) 33, 62, 645, 1418
HpySE526I ACGT 2 cut(s) 1366, 1396
Hsp92II CATG 2 cut(s) 835, 1442
HspAI GCGC 1 cut(s) 899
Kpn2I TCCGGA 1 cut(s) 1091
Kzo9I GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
LmnI GCTCC 4 cut(s) 91, 218, 1097, 1440
LweI GCATC 2 cut(s) 1119, 1372
MaeI CTAG 5 cut(s) 168, 180, 341, 372, 1233
MaeII ACGT 2 cut(s) 1366, 1396
MaeIII GTNAC 4 cut(s) 335, 398, 545, 1225
MalI GATC 8 cut(s) 201, 391, 408, 420, 801, 846, 1012, 1043
MboI GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
MboII GAAGA 4 cut(s) 168, 839, 1080, 1140
MfeI CAATTG 3 cut(s) 677, 697, 1386
MflI RGATCY 3 cut(s) 389, 844, 1010
MhlI GDGCHC 1 cut(s) 1102
MlyI GAGTC 1 cut(s) 887
MnlI CCTC 4 cut(s) 47, 862, 1080, 1088
MroI TCCGGA 1 cut(s) 1091
MspI CCGG 4 cut(s) 803, 962, 1092, 1218
MspR9I CCNGG 2 cut(s) 90, 804
MunI CAATTG 3 cut(s) 677, 697, 1386
Mva1269I GAATGC 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 1283
NciI CCSGG 1 cut(s) 804
NdeII GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
NlaIII CATG 2 cut(s) 835, 1442
NlaIV GGNNCC 3 cut(s) 846, 873, 1012
NmuCI GTSAC 3 cut(s) 335, 398, 1225
NsbI TGCGCA 1 cut(s) 900
NspV TTCGAA 1 cut(s) 863
PctI GAATGC 1 cut(s) 1110
PfeI GAWTC 7 cut(s) 476, 583, 622, 685, 783, 814, 1355
PflFI GACNNNGTC 1 cut(s) 833
PinAI ACCGGT 1 cut(s) 1217
PkrI GCNGC 1 cut(s) 1351
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
Ppu21I YACGTR 2 cut(s) 1367, 1397
PshBI ATTAAT 2 cut(s) 462, 710
PsiI TTATAA 2 cut(s) 555, 879
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 3 cut(s) 846, 873, 1012
PsuI RGATCY 3 cut(s) 389, 844, 1010
PsyI GACNNNGTC 1 cut(s) 833
RsaI GTAC 4 cut(s) 451, 808, 940, 1392
RsaNI GTAC 4 cut(s) 450, 807, 939, 1391
SatI GCNGC 1 cut(s) 1350
Sau3AI GATC 8 cut(s) 199, 389, 406, 418, 799, 844, 1010, 1041
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 2 cut(s) 90, 804
SduI GDGCHC 1 cut(s) 1102
SfaNI GCATC 2 cut(s) 1119, 1372
SfcI CTRYAG 1 cut(s) 909
SfuI TTCGAA 1 cut(s) 863
SnaBI TACGTA 1 cut(s) 1367
SsiI CCGC 4 cut(s) 576, 842, 1292, 1349
SspMI CTAG 5 cut(s) 168, 180, 341, 372, 1233
StyD4I CCNGG 2 cut(s) 88, 802
StyI CCWWGG 2 cut(s) 216, 970
TaaI ACNGT 3 cut(s) 119, 887, 956
TaiI ACGT 2 cut(s) 1369, 1399
TaqI TCGA 6 cut(s) 522, 654, 786, 794, 863, 1044
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 1352
TfiI GAWTC 7 cut(s) 476, 583, 622, 685, 783, 814, 1355
TseFI GTSAC 3 cut(s) 335, 398, 1225
Tsp45I GTSAC 3 cut(s) 335, 398, 1225
TspDTI ATGAA 6 cut(s) 223, 550, 555, 746, 840, 848
TspGWI ACGGA 1 cut(s) 1003
Tth111I GACNNNGTC 1 cut(s) 833
VspI ATTAAT 2 cut(s) 462, 710
XapI RAATTY 4 cut(s) 309, 347, 854, 1143
XspI CTAG 5 cut(s) 168, 180, 341, 372, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.