pycom04g07530

Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016119
Physical Location & Seq
Reverse (-)
8211685 .. 8212788
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07530.1

Sequence Viewer

Length: 1104 bp
ATGAATAATACACCCCAAAGTGACGATACTCGCCACGATCGTTACATGTATGATACTAATTCTCATCATAGTTGGAATAATCACATTAATAGTTGTATTGACAGTTATCTTGGTTCTCAAATTTGTATTGATAGTTATATTTTAAGCAACAGTAACAATTACAGTGACAGCTACATTTATAGTTACATTTGTGGCGAAAGCGTAAATAGTAGTAAAAGCAAGAGTTCCAGTATAAAAACTAGCACAGATGATAGTGATTTTAGTATAAGTTCTAATAATTTAAATGTAACTCAAAAATACAGGCATTTGTGGATTCAAAGCGAAAATTGTTATGGATTAAATTATAAGAAATTTTTAAAATCAAAAATGAATATTTGTGAACAATGTGGATGTCATTTGAAAATGAGTAGTTTTGATAGAATCGAATTTTCGATTGATCCTGGTACTTGGGATCCTATGAACGAAGACATGGTCTCTCTGGTTCCCATTGAATTTCATTCGGAGAAGGAACCTTATAAAGATCGTATTGATTCTTATAAAAAAAATACAGGATTAACTGAGGCTGTTCAAACAGGCACAGGTCAACTAAATGGTATTCCCATAGCAATTGGTGTTATGGATTTTCAGTTTATGGGTGGTAGTATGGGATCTGTAGTGGGCGAAAAAATCACACGTTTGGCCGAGTATGCTACCAATCAATTTTTACCTCTTATTCTAGTGTGTGCTTCCGGAGGAGCACGCATGCAAGAAGGAAGCTTGAGCTTGATGCAAATGGCTAAAATATCTTCCGCTTTATATGATTATCAATTAAATAAAAAGTTATTTTATGTAGCAATCCTTACATCCCCTACCACAGGCAGGGTGACGGCTAGTTTTGGTATGTTGGGAGATATCATTATTGCCGAACCCAATGCTTATATTGCATTTGCAAGTAAAAGAGTAATTGAACAAACATTGAATAAGACAGTACCTGAGGATTCACAAGTGGCTGAATATTTATTCCATAAGGGCTTATTCGATCCAATCGTACCACGTAATCCTTTAAAGGGCGTTCTGAGTGAGTTATTTCGGCTACATGCTTTCTTTCCTTTGAATGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00195 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00195 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212
Pfam Domains
Protein Families
Carboxyl_trans PSI_8

Protein Analysis

368

Amino Acids

41.25

Weight (kDa)

5.73

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carboxyl_trans PF01039 174 - 328 3.8e-18 Carboxyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 345, 516, 537
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 1 cut(s) 789
AclWI GGATC 5 cut(s) 431, 446, 459, 655, 1013
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 4 cut(s) 120, 350, 425, 491
AfaI GTAC 3 cut(s) 445, 969, 1029
AfiI CCNNNNNNNGG 3 cut(s) 854, 858, 1046
AflIII ACRYGT 2 cut(s) 45, 671
AgsI TTSAA 7 cut(s) 317, 400, 491, 569, 947, 958, 1093
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 3 cut(s) 171, 756, 762
AluI AGCT 3 cut(s) 171, 756, 762
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 1 cut(s) 478
AlwI GGATC 5 cut(s) 431, 446, 459, 655, 1013
AlwNI CAGNNNCTG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 678
ApoI RAATTY 4 cut(s) 120, 350, 425, 491
ArsI GACNNNNNNTTYG 2 cut(s) 456, 488
AseI ATTAAT 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 874
AxyI CCTNAGG 1 cut(s) 972
BamHI GGATCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 739
BceAI ACGGC 1 cut(s) 882
BcgI CGANNNNNNTGC 2 cut(s) 893, 927
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 3 cut(s) 240, 716, 870
BfmI CTRYAG 1 cut(s) 651
Bme1390I CCNGG 1 cut(s) 441
BmiI GGNNCC 3 cut(s) 453, 483, 510
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 756
BpiI GAAGAC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 778
BsaAI YACGTR 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 3 cut(s) 854, 858, 1046
Bse1I ACTGG 1 cut(s) 228
Bse21I CCTNAGG 1 cut(s) 972
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 1 cut(s) 441
BseGI GGATG 2 cut(s) 395, 842
BseLI CCNNNNNNNGG 3 cut(s) 854, 858, 1046
BseMII CTCAG 3 cut(s) 549, 963, 1046
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 729
BslI CCNNNNNNNGG 3 cut(s) 854, 858, 1046
BsmAI GTCTC 1 cut(s) 478
BsnI GGCC 1 cut(s) 680
Bso31I GGTCTC 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 739
Bsp13I TCCGGA 1 cut(s) 728
Bsp143I GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
BspACI CCGC 1 cut(s) 789
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 3 cut(s) 550, 964, 1047
BspEI TCCGGA 1 cut(s) 728
BspLI GGNNCC 3 cut(s) 453, 483, 510
BspPI GGATC 5 cut(s) 431, 446, 459, 655, 1013
BspTNI GGTCTC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 228
BssMI GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 104, 152, 164, 967
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 2 cut(s) 739, 743
BstDEI CTNAG 3 cut(s) 558, 972, 1055
BstENI CCTNNNNNAGG 1 cut(s) 852
BstF5I GGATG 2 cut(s) 395, 842
BstKTI GATC 6 cut(s) 40, 439, 454, 523, 650, 1021
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 686, 920
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 3 cut(s) 49, 745, 1079
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 651
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 451, 647
BstYI RGATCY 2 cut(s) 451, 647
Bsu36I CCTNAGG 1 cut(s) 972
BsuRI GGCC 1 cut(s) 680
BtsCI GGATG 2 cut(s) 395, 842
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 739, 743
CaiI CAGNNNCTG 1 cut(s) 971
Csp6I GTAC 3 cut(s) 444, 968, 1028
CviAII CATG 4 cut(s) 46, 469, 742, 1076
CviQI GTAC 3 cut(s) 444, 968, 1028
DdeI CTNAG 3 cut(s) 558, 972, 1055
DpnI GATC 6 cut(s) 39, 438, 453, 522, 649, 1020
DpnII GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
DraI TTTAAA 3 cut(s) 282, 357, 1044
EaeI YGGCCR 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 892
Eco81I CCTNAGG 1 cut(s) 972
EcoNI CCTNNNNNAGG 1 cut(s) 852
EcoRII CCWGG 1 cut(s) 439
EcoRV GATATC 1 cut(s) 892
FaeI CATG 4 cut(s) 49, 472, 745, 1079
FatI CATG 4 cut(s) 45, 468, 741, 1075
FokI GGATG 2 cut(s) 402, 829
FspBI CTAG 3 cut(s) 240, 716, 870
HaeIII GGCC 1 cut(s) 680
HapII CCGG 1 cut(s) 729
Hin1II CATG 4 cut(s) 49, 472, 745, 1079
HincII GTYRAC 1 cut(s) 584
HindII GTYRAC 1 cut(s) 584
HindIII AAGCTT 1 cut(s) 754
HinfI GANTC 4 cut(s) 313, 420, 530, 977
HpaII CCGG 1 cut(s) 729
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 2 cut(s) 380, 584
Hpy188I TCNGA 2 cut(s) 502, 1056
Hpy188III TCNNGA 1 cut(s) 729
Hpy8I GTNNAC 2 cut(s) 380, 584
HpyAV CCTTC 2 cut(s) 499, 743
HpyCH4III ACNGT 4 cut(s) 104, 152, 164, 967
HpyCH4IV ACGT 2 cut(s) 673, 1033
HpyCH4V TGCA 4 cut(s) 745, 769, 923, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 920
HpyF3I CTNAG 3 cut(s) 558, 972, 1055
HpySE526I ACGT 2 cut(s) 673, 1033
Hsp92II CATG 4 cut(s) 49, 472, 745, 1079
Kpn2I TCCGGA 1 cut(s) 728
Kzo9I GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
LmnI GCTCC 1 cut(s) 734
LweI GCATC 1 cut(s) 756
MaeI CTAG 3 cut(s) 240, 716, 870
MaeII ACGT 2 cut(s) 673, 1033
MaeIII GTNAC 7 cut(s) 20, 41, 152, 164, 182, 286, 862
MalI GATC 6 cut(s) 39, 438, 453, 522, 649, 1020
MboI GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
MboII GAAGA 2 cut(s) 476, 777
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 2 cut(s) 451, 647
MhlI GDGCHC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 4 cut(s) 553, 717, 725, 967
MroI TCCGGA 1 cut(s) 728
MseI TTAA 8 cut(s) 87, 143, 281, 338, 356, 554, 809, 1043
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 1 cut(s) 441
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 686, 920
NdeII GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
NlaIII CATG 4 cut(s) 49, 472, 745, 1079
NlaIV GGNNCC 3 cut(s) 453, 483, 510
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 3 cut(s) 20, 164, 862
NspI RCATGY 3 cut(s) 49, 745, 1079
PaeI GCATGC 1 cut(s) 745
PciI ACATGT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 37, 1023
PfeI GAWTC 4 cut(s) 313, 420, 530, 977
PflFI GACNNNGTC 1 cut(s) 470
Ple19I CGATCG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 1034
PscI ACATGT 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 87
PsiI TTATAA 3 cut(s) 345, 516, 537
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 453, 483, 510
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 2 cut(s) 451, 647
PsyI GACNNNGTC 1 cut(s) 470
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 3 cut(s) 445, 969, 1029
RsaNI GTAC 3 cut(s) 444, 968, 1028
SaqAI TTAA 8 cut(s) 87, 143, 281, 338, 356, 554, 809, 1043
Sau3AI GATC 6 cut(s) 37, 436, 451, 520, 647, 1018
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 1 cut(s) 739
SetI ASST 9 cut(s) 173, 514, 583, 676, 709, 758, 764, 973, 1036
SfaNI GCATC 1 cut(s) 756
SfcI CTRYAG 1 cut(s) 651
SmiI ATTTAAAT 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
SphI GCATGC 1 cut(s) 745
SsiI CCGC 1 cut(s) 789
SspI AATATT 2 cut(s) 373, 995
SspMI CTAG 3 cut(s) 240, 716, 870
StyD4I CCNGG 1 cut(s) 439
SwaI ATTTAAAT 1 cut(s) 282
TaaI ACNGT 4 cut(s) 104, 152, 164, 967
TaiI ACGT 2 cut(s) 676, 1036
TaqI TCGA 3 cut(s) 423, 431, 1017
TfiI GAWTC 4 cut(s) 313, 420, 530, 977
Tru1I TTAA 8 cut(s) 87, 143, 281, 338, 356, 554, 809, 1043
Tru9I TTAA 8 cut(s) 87, 143, 281, 338, 356, 554, 809, 1043
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 3 cut(s) 20, 164, 862
Tsp45I GTSAC 3 cut(s) 20, 164, 862
TspDTI ATGAA 4 cut(s) 17, 383, 473, 485
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 470
VspI ATTAAT 1 cut(s) 87
XagI CCTNNNNNAGG 1 cut(s) 852
XapI RAATTY 4 cut(s) 120, 350, 425, 491
XceI RCATGY 3 cut(s) 49, 745, 1079
XspI CTAG 3 cut(s) 240, 716, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.