RchiOBHm_Chr6g0281331

Ribulose bisphosphate carboxylase large chain, N-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
44636823 .. 44637154
332 bp
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UTR
Exon/CDS
Intron
PRQ25233

Sequence Viewer

Length: 279 bp
ATGTCTGTGAACACTGAACAGTGTGGATGTCTTTTGAAAATGAGTAGTTCCGATAGAATCGAAACTTTGATTGATCCAAGTACTTGGGATTCTATGAATGAAGACATGGTCTCTCTGGATTTCATTCAATTTCATTCGGACGTTTGGCTGACACACATGGAAGAAGGAAGTTTGAGCTTGATGCAAATGGCTAAAATATTTTCCGCTTTATACGATTATCAATCAAATAAAAAGTTATTTTATGTTGCAATCCTTACATCCTCTACCACAGGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.4

Weight (kDa)

4.38

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 68
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 37, 128
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 82
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 32, 257
BseLI CCNNNNNNNGG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 115
BssMI GATC 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 21
BstF5I GGATG 2 cut(s) 32, 257
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 32, 257
BtsIMutI CAGTG 2 cut(s) 12, 26
Csp6I GTAC 1 cut(s) 81
CviAII CATG 2 cut(s) 106, 157
CviJI RGCY 3 cut(s) 148, 177, 191
CviKI_1 RGCY 3 cut(s) 148, 177, 191
CviQI GTAC 1 cut(s) 81
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 109, 160
FaiI YATR 5 cut(s) 95, 107, 158, 211, 243
FatI CATG 2 cut(s) 105, 156
FokI GGATG 2 cut(s) 39, 244
Hin1II CATG 2 cut(s) 109, 160
HinfI GANTC 2 cut(s) 57, 89
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 52, 139
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 184, 248
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 109, 160
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 101, 255
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 113, 173
MluCI AATT 1 cut(s) 128
MnlI CCTC 1 cut(s) 271
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 109, 160
PfeI GAWTC 2 cut(s) 57, 89
PflFI GACNNNGTC 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 82
SetI ASST 3 cut(s) 144, 179, 274
SfaNI GCATC 1 cut(s) 171
SgeI CNNG 6 cut(s) 90, 96, 118, 128, 169, 190
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 198
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 2 cut(s) 57, 89
TscAI CASTG 2 cut(s) 19, 26
TspDTI ATGAA 4 cut(s) 110, 112, 114, 122
TspRI CASTG 2 cut(s) 19, 26
Tth111I GACNNNGTC 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.