RchiOBHm_Chr5g0042991

Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016119
Physical Location & Seq
Reverse (-)
37817536 .. 37818998
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32132

Sequence Viewer

Length: 1365 bp
ATGGAAAAATGGTGGTTCGGTTCGCTCTTGTTTAGCGGGGAGTTAGAATACAGGTGTAGGCTAAGTAAATCAATGGCCAGTTTTGGTCCTTTTGAAAATCCCAGTGTAAGTGAAGATCCAATTATAGATGATATGGATAAAGGCGTGTCTAATTGTAGTGACAAGTCTAATTACAGTAATGTTGATCATTTAGTCGGCGGCGGATCCATTCGGAATTTAATATCGGATGAGACTTTTTTCGTTATGGATAGTAATAGGGACGGTTATTCCATATATTTTGATATTGAAAATAAAAATTTTGAGATTGACACCGATCATTCTTTTCTAAGTGAACTAAAAAGTTCGTTTTATAGTTATCAGACTTCGAGTTATATGAATAATGCAACTAAAAGTGACGATAATCGCCACAACCGTTACATGTATGATACTAATTCTAATTATAGTTGGAATAATCACATTACTAGTTGCATTGACAGTTATCTTCGTTCTCACATTTGTATTGATAGTTATATTTTAAGCAATAGTGACAATTACAGTGATAGTTACATTTATAGTTACATTTGTGGCGAAAGCGGAAATAGTAGTAAAAGCGGGAGTTCCAGTATCAAAACTAGCAAAGATGGTATAAGATCTAATAATTTAAATTGTGGATGTCATTTGAAAATGAGTAGTTTCGATAGAATTGAAAGTTCGATTGATCCAGGTACTTGGGATCCTATGAATGAAGACATGGTCTCTCTGGATCCCATTCAATTTCATTCGGAGGAGGAACCTTATAAGGATCGTATTGATTCTTATCAAAAAAATACAGGATTAACTGAGGCTGTTCAAACAGGCACAGGTCAATTAAATGGCATTCCCGTAGCAATTGGGGTTATGGATTTTCAGTTTATGGGGGGTAGTATGGGATCCGTAGTAGGTGAAAAAATCACACGTTTGGCTGAGTATGCTACCAATAAACTTTTACCTCTTATTCTAGTGTGTGCTTCCGGAGGAGCACGCATGCAAGAAGGAAGTTTGAGCTTGATGCAAATGGCTAAAATATCTTCCGCTTTATACGATTATCAATCAAATAAAAAGTTATTTTATGTCGCAGTCCTTACATCCCCTACCACAGGTGGGGTGACGGCTAGTTTTGGTATGTTGGGAGATATCATTATTGCTGAACCCAACGCTTACATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTGAATAAGACAGTACCCGAGGATTCACAAGTGGCTGAATATTTATTCCATAAGGGCTTATTCGATCCAATCGTACCACGTAATCCTTTAAAGGGCGTTCTGAGTGAATTATTTCGGCTACATGCCTTCTTTCCTTTGAATCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00195 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00195 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212
Pfam Domains
Protein Families
Carboxyl_trans PSI_8

Protein Analysis

454

Amino Acids

50.67

Weight (kDa)

4.88

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carboxyl_trans PF01039 247 - 415 2.1e-21 Carboxyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AccIII TCCGGA 1 cut(s) 989
AciI CCGC 7 cut(s) 36, 198, 201, 573, 591, 1050, 1190
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 2 cut(s) 214, 295
AfaI GTAC 3 cut(s) 706, 1230, 1290
AfiI CCNNNNNNNGG 3 cut(s) 1115, 1119, 1307
AflIII ACRYGT 2 cut(s) 417, 932
AgsI TTSAA 9 cut(s) 95, 287, 661, 686, 752, 830, 1208, 1219, 1354
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 1 cut(s) 1023
AluI AGCT 1 cut(s) 1023
Alw21I GWGCWC 1 cut(s) 1000
Alw26I GTCTC 2 cut(s) 224, 739
Ama87I CYCGRG 1 cut(s) 1232
Aor13HI TCCGGA 1 cut(s) 989
AoxI GGCC 1 cut(s) 75
ApoI RAATTY 2 cut(s) 214, 295
Asp700I GAANNNNTTC 1 cut(s) 1326
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 932, 1135
AvaI CYCGRG 1 cut(s) 1232
AvaII GGWCC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 77
BamHI GGATCC 4 cut(s) 203, 712, 742, 908
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 1000
BccI CCATC 1 cut(s) 614
BceAI ACGGC 1 cut(s) 1143
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 224, 739
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 4 cut(s) 462, 612, 977, 1131
BglII AGATCT 1 cut(s) 629
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 5 cut(s) 205, 714, 744, 771, 910
BmrFI CCNGG 1 cut(s) 702
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 1017
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 1295
BsaBI GATNNNNATC 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 1 cut(s) 1233
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 3 cut(s) 1115, 1119, 1307
Bse1I ACTGG 3 cut(s) 78, 102, 600
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 989
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 1233
BseGI GGATG 3 cut(s) 232, 656, 1103
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 3 cut(s) 1115, 1119, 1307
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 3 cut(s) 810, 933, 1307
BseNI ACTGG 3 cut(s) 78, 102, 600
BseRI GAGGAG 2 cut(s) 779, 1008
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 1000
BsiHKCI CYCGRG 1 cut(s) 1232
BsiSI CCGG 1 cut(s) 990
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 1115, 1119, 1307
BsmAI GTCTC 2 cut(s) 224, 739
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 1232
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp13I TCCGGA 1 cut(s) 989
BspACI CCGC 7 cut(s) 36, 198, 201, 573, 591, 1050, 1190
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 811, 934, 1308
BspEI TCCGGA 1 cut(s) 989
BspLI GGNNCC 5 cut(s) 205, 714, 744, 771, 910
BspTNI GGTCTC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 1179
BsrI ACTGG 3 cut(s) 78, 102, 600
BssECI CCNNGG 1 cut(s) 1233
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 6 cut(s) 176, 263, 413, 476, 536, 1228
BstBAI YACGTR 1 cut(s) 1295
BstC8I GCNNGC 2 cut(s) 1000, 1004
BstDEI CTNAG 6 cut(s) 62, 326, 819, 942, 1316, 1362
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 3 cut(s) 232, 656, 1103
BstMAI GTCTC 2 cut(s) 224, 739
BstMWI GCNNNNNNNGC 2 cut(s) 947, 1181
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 3 cut(s) 421, 1006, 1340
BstSCI CCNGG 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 6 cut(s) 115, 203, 629, 712, 742, 908
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 6 cut(s) 115, 203, 629, 712, 742, 908
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 232, 656, 1103
BtsIMutI CAGTG 2 cut(s) 109, 541
Cac8I GCNNGC 2 cut(s) 1000, 1004
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 705, 1229, 1289
CviAII CATG 4 cut(s) 418, 730, 1003, 1337
CviQI GTAC 3 cut(s) 705, 1229, 1289
DdeI CTNAG 6 cut(s) 62, 326, 819, 942, 1316, 1362
DraI TTTAAA 2 cut(s) 642, 1305
EaeI YGGCCR 1 cut(s) 75
EciI GGCGGA 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 739
Eco32I GATATC 1 cut(s) 1153
Eco47I GGWCC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 1232
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoRII CCWGG 1 cut(s) 700
EcoRV GATATC 1 cut(s) 1153
FaeI CATG 4 cut(s) 421, 733, 1006, 1340
FaqI GGGAC 1 cut(s) 272
FatI CATG 4 cut(s) 417, 729, 1002, 1336
FauI CCCGC 3 cut(s) 29, 584, 1183
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 3 cut(s) 239, 663, 1090
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 4 cut(s) 462, 612, 977, 1131
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 990
Hin1II CATG 4 cut(s) 421, 733, 1006, 1340
HinfI GANTC 3 cut(s) 791, 1238, 1354
HpaII CCGG 1 cut(s) 990
HphI GGTGA 2 cut(s) 932, 1135
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 5 cut(s) 213, 226, 360, 763, 1317
Hpy188III TCNNGA 2 cut(s) 740, 990
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 1004, 1351
HpyCH4III ACNGT 6 cut(s) 176, 263, 413, 476, 536, 1228
HpyCH4IV ACGT 2 cut(s) 934, 1294
HpyCH4V TGCA 5 cut(s) 383, 468, 1006, 1030, 1184
HpyF10VI GCNNNNNNNGC 2 cut(s) 947, 1181
HpyF3I CTNAG 6 cut(s) 62, 326, 819, 942, 1316, 1362
HpySE526I ACGT 2 cut(s) 934, 1294
Hsp92II CATG 4 cut(s) 421, 733, 1006, 1340
Kpn2I TCCGGA 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 184
LmnI GCTCC 1 cut(s) 995
LweI GCATC 1 cut(s) 1017
MaeI CTAG 4 cut(s) 462, 612, 977, 1131
MaeII ACGT 2 cut(s) 934, 1294
MaeIII GTNAC 7 cut(s) 158, 392, 413, 524, 542, 554, 1123
MboII GAAGA 4 cut(s) 125, 473, 737, 1038
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 6 cut(s) 115, 203, 629, 712, 742, 908
MhlI GDGCHC 1 cut(s) 1000
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 6 cut(s) 757, 760, 814, 978, 986, 1228
Mox20I TGGCCA 1 cut(s) 77
MroI TCCGGA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 1326
MscI TGGCCA 1 cut(s) 77
MseI TTAA 6 cut(s) 218, 515, 641, 815, 848, 1304
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 867
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 947, 1181
NlaIII CATG 4 cut(s) 421, 733, 1006, 1340
NlaIV GGNNCC 5 cut(s) 205, 714, 744, 771, 910
NmuCI GTSAC 4 cut(s) 158, 392, 524, 1123
NspI RCATGY 3 cut(s) 421, 1006, 1340
PaeI GCATGC 1 cut(s) 1006
PciI ACATGT 1 cut(s) 417
PcsI WCGNNNNNNNCGW 2 cut(s) 409, 1284
PctI GAATGC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 1326
PfeI GAWTC 3 cut(s) 791, 1238, 1354
PflFI GACNNNGTC 1 cut(s) 731
PkrI GCNGC 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 1295
PscI ACATGT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 5 cut(s) 205, 714, 744, 771, 910
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 6 cut(s) 115, 203, 629, 712, 742, 908
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 3 cut(s) 706, 1230, 1290
RsaNI GTAC 3 cut(s) 705, 1229, 1289
SaqAI TTAA 6 cut(s) 218, 515, 641, 815, 848, 1304
SatI GCNGC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 1 cut(s) 1017
SinI GGWCC 1 cut(s) 86
SmiI ATTTAAAT 1 cut(s) 642
SpeI ACTAGT 1 cut(s) 461
SphI GCATGC 1 cut(s) 1006
SsiI CCGC 7 cut(s) 36, 198, 201, 573, 591, 1050, 1190
SspI AATATT 1 cut(s) 1256
SspMI CTAG 4 cut(s) 462, 612, 977, 1131
StyD4I CCNGG 1 cut(s) 700
SwaI ATTTAAAT 1 cut(s) 642
TaaI ACNGT 6 cut(s) 176, 263, 413, 476, 536, 1228
TaiI ACGT 2 cut(s) 937, 1297
TaqI TCGA 4 cut(s) 365, 675, 692, 1278
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 3 cut(s) 791, 1238, 1354
Tru1I TTAA 6 cut(s) 218, 515, 641, 815, 848, 1304
Tru9I TTAA 6 cut(s) 218, 515, 641, 815, 848, 1304
TscAI CASTG 2 cut(s) 109, 541
TseFI GTSAC 4 cut(s) 158, 392, 524, 1123
Tsp45I GTSAC 4 cut(s) 158, 392, 524, 1123
TspDTI ATGAA 4 cut(s) 389, 734, 738, 746
TspGWI ACGGA 1 cut(s) 901
TspRI CASTG 2 cut(s) 109, 541
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 2 cut(s) 214, 295
XceI RCATGY 3 cut(s) 421, 1006, 1340
XmnI GAANNNNTTC 1 cut(s) 1326
XspI CTAG 4 cut(s) 462, 612, 977, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.