Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008529

Physical Location & Seq

Genomic Coordinates Reverse (-)

62071 .. 64627

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCATCCTATGATGACGCAGAAAGAGTAGATCGGGGCATTAAGAAGGAGGAGAAACACGAACAAGAGGAAGGCGACGGGTTCATTGATAAGATCAAGGATTTCATTCATGACATTGGCGAGAAGATCGAGGGAGCTATCGGATTTGGTAAACCCACTGCGGATGTGGCTGCAATTCACATCCCTTGCATTAATCTGGAGAAGGCAGAGATTGTGGTGGATGTGCTCATTAAGAACCCAAATCCGGTGCCCATTCCGCTCATTGACATTAACTACTTGATCGAAAGTGATGGAAGGAAACTTGTGTCCGGATTGATCCCGGACGCTGGAACAATCCATGCCCATGGGGAAGAGATTGTCAAAGTTCCTCTTCACTTGATTTACGATGACATCAAGAGCACCTACAGTGATATCGAGCCTGGAAGCATTATTCCCTACAAGATCAAGGTTGATCTCATTGTGGATGTCCCTGTTCTCGGCAGGCTCACTCTCCCACTTGAGAAAACTGGAGAGATTCCCATCCCATACAAACCTGATGTTGATGTTGACAAAATCAAGTTTCAGAAATTCTCCTTTGAAGAAACTGTTGCTGTGCTCCATTTGAAGCTCGAGAACATGAATGACTTTGACTTGGGCCTCAATGCTTTAGACTACGAGATTTGGCTCTCTGAGGTCAGCATTGGAGGCGCTGAGCTCTCCAAATCTGCCAACCTTGAAAAGAAGGGTATCACTTTTGTTGACGTTCCTATTACCTTCAGGCCAAAGGATTTTGGCTCTGCGCTCTGGGATATGATTCGGGGTAAGGGTACTGGCTATACCATCAAAGGCCACATTGATGTTGACACTCCCTTTGGGGCCATGAAGTTACCCATTGTCAAGGAGGGGGGTACTACACGCCTTAAGAAGAGCAAGGATGACGGTGGTGATGATGACGATGATGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

316

Amino Acids

34.8

Weight (kDa)

4.72

Isoelectric Point (pI)

19.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	75 - 170	2.9e-17	Late embryogenesis abundant protein
LEA_2	PF03168	200 - 295	2.8e-17	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44060 AT2G44060
fragaria_vesca	FvH4_1g00090 FvH4_1g00090 FvH4_1g00090 FvH4_1g00090 FvH4_1g00090
malus_domestica	MD02G1000600.v1.1 MD15G1142200.v1.1
prunus_persica	Prupe.7G271000_v2.0.a1
pyrus_communis	pycom15g12830 pycom290g00100
rosa_chinensis	RchiOBHm_Chr2g0084381
rosa_laevigata	RLG00000015612
rosa_multiflora	Rmu_sc0003129.1_g000001 Rmu_sc0009404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00156150
rosa_rugosa	Rorug01G0453000
rosa_samantha	Rh2AG001300 Rh2BG001200 Rh2CG001200 Rh2DG001400
rosa_wichuraiana	Rw2G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	2 cut(s)	161, 257
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	739
AfaI	GTAC	2 cut(s)	808, 889
AfiI	CCNNNNNNNGG	3 cut(s)	244, 326, 476
AflII	CTTAAG	1 cut(s)	899
AgsI	TTSAA	3 cut(s)	578, 604, 716
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	3 cut(s)	137, 607, 694
AluI	AGCT	3 cut(s)	137, 607, 694
Alw21I	GWGCWC	4 cut(s)	228, 401, 597, 696
AlwI	GGATC	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	4 cut(s)	634, 758, 826, 855
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
AseI	ATTAAT	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	689, 781
AspS9I	GGNCC	2 cut(s)	634, 855
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	935
AvaI	CYCGRG	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	696
Bbv12I	GWGCWC	4 cut(s)	228, 401, 597, 696
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	284, 527, 827
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	1 cut(s)	946
BfmI	CTRYAG	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	899
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	320, 420
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	634, 855
BmiI	GGNNCC	2 cut(s)	249, 856
BmrFI	CCNGG	2 cut(s)	320, 420
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	218, 528
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	2 cut(s)	244, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 326, 476
Bse1I	ACTGG	2 cut(s)	511, 814
Bse8I	GATNNNNATC	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	7 cut(s)	5, 169, 180, 226, 469, 519, 919
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	3 cut(s)	244, 326, 476
BseMII	CTCAG	2 cut(s)	660, 681
BseNI	ACTGG	2 cut(s)	511, 814
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	4 cut(s)	636, 760, 828, 857
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	4 cut(s)	228, 401, 597, 696
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	3 cut(s)	245, 309, 320
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	244, 326, 476
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	636, 760, 828, 857
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	5 cut(s)	228, 252, 401, 597, 696
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	2 cut(s)	161, 257
BspANI	GGCC	4 cut(s)	636, 760, 828, 857
BspCNI	CTCAG	2 cut(s)	661, 682
BspEI	TCCGGA	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	249, 856
BspPI	GGATC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	899
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	511, 814
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	407, 586, 920
Bst6I	CTCTTC	3 cut(s)	345, 375, 899
BstAFI	CTTAAG	1 cut(s)	899
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	669, 690
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	7 cut(s)	5, 169, 180, 226, 469, 519, 919
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	689, 781
BstKTI	GATC	7 cut(s)	34, 96, 129, 282, 318, 444, 454
BstMBI	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 256, 684
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	318, 418
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	636, 760, 828, 857
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	7 cut(s)	5, 169, 180, 226, 469, 519, 919
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 412
Cac8I	GCNNGC	1 cut(s)	482
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	2 cut(s)	689, 781
Cfr13I	GGNCC	2 cut(s)	634, 855
CseI	GACGC	2 cut(s)	26, 332
Csp6I	GTAC	2 cut(s)	807, 888
CviAII	CATG	5 cut(s)	110, 338, 344, 616, 859
CviQI	GTAC	2 cut(s)	807, 888
DdeI	CTNAG	2 cut(s)	669, 690
DpnI	GATC	7 cut(s)	33, 95, 128, 281, 317, 443, 453
DpnII	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
Eam1104I	CTCTTC	3 cut(s)	345, 375, 899
EarI	CTCTTC	3 cut(s)	345, 375, 899
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	696
Eco32I	GATATC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	5 cut(s)	113, 341, 347, 619, 862
FaiI	YATR	9 cut(s)	12, 111, 339, 345, 526, 617, 791, 816, 860
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	5 cut(s)	109, 337, 343, 615, 858
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	6 cut(s)	167, 176, 233, 476, 506, 926
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	946
GlaI	GCGC	2 cut(s)	688, 780
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	218, 528
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	636, 760, 828, 857
HapII	CCGG	3 cut(s)	245, 309, 320
HgaI	GACGC	2 cut(s)	26, 332
HhaI	GCGC	2 cut(s)	689, 781
Hin1II	CATG	5 cut(s)	113, 341, 347, 619, 862
Hin6I	GCGC	2 cut(s)	687, 779
HinP1I	GCGC	2 cut(s)	687, 779
HincII	GTYRAC	3 cut(s)	547, 739, 841
HindII	GTYRAC	3 cut(s)	547, 739, 841
HinfI	GANTC	2 cut(s)	514, 793
HpaII	CCGG	3 cut(s)	245, 309, 320
HphI	GGTGA	1 cut(s)	935
Hpy166II	GTNNAC	4 cut(s)	152, 547, 739, 841
Hpy188I	TCNGA	3 cut(s)	143, 564, 670
Hpy188III	TCNNGA	5 cut(s)	110, 197, 309, 394, 610
Hpy8I	GTNNAC	4 cut(s)	152, 547, 739, 841
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	6 cut(s)	40, 65, 196, 288, 715, 763
HpyCH4III	ACNGT	3 cut(s)	407, 586, 920
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	2 cut(s)	173, 189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 256, 684
HpyF3I	CTNAG	2 cut(s)	669, 690
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	5 cut(s)	113, 341, 347, 619, 862
HspAI	GCGC	2 cut(s)	687, 779
Kpn2I	TCCGGA	1 cut(s)	308
Kzo9I	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
LguI	GCTCTTC	1 cut(s)	899
LmnI	GCTCC	2 cut(s)	134, 600
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	946
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	864
MalI	GATC	7 cut(s)	33, 95, 128, 281, 317, 443, 453
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
MboII	GAAGA	5 cut(s)	136, 362, 362, 590, 916
MhlI	GDGCHC	5 cut(s)	228, 252, 401, 597, 696
MluCI	AATT	2 cut(s)	174, 566
MnlI	CCTC	9 cut(s)	43, 61, 124, 378, 647, 664, 677, 874, 934
MroI	TCCGGA	1 cut(s)	308
MseI	TTAA	5 cut(s)	42, 192, 231, 270, 900
MslI	CAYNNNNRTG	2 cut(s)	342, 834
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	3 cut(s)	245, 309, 320
MspR9I	CCNGG	2 cut(s)	320, 420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	167, 256, 684
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
NlaIII	CATG	5 cut(s)	113, 341, 347, 619, 862
NlaIV	GGNNCC	2 cut(s)	249, 856
NmeAIII	GCCGAG	1 cut(s)	456
PaeR7I	CTCGAG	1 cut(s)	608
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	899
PfeI	GAWTC	2 cut(s)	514, 793
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	249, 856
PspPI	GGNCC	2 cut(s)	634, 855
RsaI	GTAC	2 cut(s)	808, 889
RsaNI	GTAC	2 cut(s)	807, 888
RseI	CAYNNNNRTG	2 cut(s)	342, 834
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	899
SaqAI	TTAA	5 cut(s)	42, 192, 231, 270, 900
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	7 cut(s)	31, 93, 126, 279, 315, 441, 451
Sau96I	GGNCC	2 cut(s)	634, 855
ScrFI	CCNGG	2 cut(s)	320, 420
SduI	GDGCHC	5 cut(s)	228, 252, 401, 597, 696
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	342, 834
SmlI	CTYRAG	3 cut(s)	497, 608, 899
SmoI	CTYRAG	3 cut(s)	497, 608, 899
Sse9I	AATT	2 cut(s)	174, 566
SsiI	CCGC	2 cut(s)	161, 257
SspMI	CTAG	1 cut(s)	946
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	318, 418
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	407, 586, 920
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	4 cut(s)	129, 282, 414, 609
TasI	AATT	2 cut(s)	174, 566
TfiI	GAWTC	2 cut(s)	514, 793
Tru1I	TTAA	5 cut(s)	42, 192, 231, 270, 900
Tru9I	TTAA	5 cut(s)	42, 192, 231, 270, 900
TscAI	CASTG	2 cut(s)	163, 412
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	73, 94, 98, 632, 875
TspRI	CASTG	2 cut(s)	163, 412
Vha464I	CTTAAG	1 cut(s)	899
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	608
XspI	CTAG	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.