Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008529

Physical Location & Seq

Genomic Coordinates Reverse (-)

10528569 .. 10530978

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCATCGTCTGATGATAAGCCCGAAATTGTGGATCGGGGTGCTAAGGAGAAGAAGGATCAAAAGAAGGAGGAGGGGGAGGAGGAGGGTGGATTTATTGACAAGGTGAAGGGTTTCATCCAAGACATTGGGGAGAAGATCGAGGGTGCCATTGGGTTCGGCAAGCCAACCGCCGATGTTGCTGCCGTTCACATCCCCAGCATCAATCTCGAAAGGGCCGAGATCGTGGTGGATGTGCTCATCAAGAACCCTAATCCGGTTCCCATCCCTCTCATCGACATTAACTACTTGATCGAAAGTGATGGGAGGAAACTTGTCTCCGGGTTGATCCCCGATGCTGGGACAATCCACGCCCACGGGGAGGAGACTGTCAAAGTTCCCGTCCACTTGGTGTACGATGACATCAAGAGCACCTACGATGACATCAAGCCTGGAAGCATCATTCCGTACAGGGTCAAGGTCGATCTCATTGTGGATGTCCCTGTCATCGGCAGAATCACTATCCCCCTCGAGAAAACTGGAGAAATCCCCATCCCTTACAAGCCTGATGTCGATGTTGAGAAGATCAGGTTTCAAACCTTCTCCTTTGAGGAAACCGTTGCGGTCCTCCATTTGAAGCTGGAGAACATGAATGACTTTGACTTAGGCCTCAATGCTCTCGACTACGAGATTTGGCTGTGTGATGAGAGCATTGGGGGTGCAGAGCTCGCCAAGTCTGCCAATCTTACTAAAAAGGGCATTACTTATGTCGATGTTCCCATTACCTTCAGGCCTAAGGATTTCGGGTCTGCGCTCTGGGATATGATTCGGGGAAAGGGTACCGGCTACAGCATCAAAGGGAATATCAATGTGGACACGCCCTTTGGAGCCATGAAGTTGCCCATTGTCAAGGAGGGTGGTACTACACGCATCAAGAAGAACAAGGAAGATGGCGGTGATGACGATGATGATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

320

Amino Acids

35.04

Weight (kDa)

4.73

Isoelectric Point (pI)

20.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	79 - 174	9.9e-19	Late embryogenesis abundant protein
LEA_2	PF03168	204 - 299	3.6e-16	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44060 AT2G44060
fragaria_vesca	FvH4_1g00090 FvH4_1g00090 FvH4_1g00090 FvH4_1g00090 FvH4_1g00090
malus_domestica	MD02G1000600.v1.1 MD15G1142200.v1.1
prunus_persica	Prupe.7G271000_v2.0.a1
pyrus_communis	pycom15g12830 pycom290g00100
rosa_chinensis	RchiOBHm_Chr2g0084381
rosa_laevigata	RLG00000015612
rosa_multiflora	Rmu_sc0003129.1_g000001 Rmu_sc0009404.1_g000010
rosa_roxburghii	Rroxscaffold_2G00156150
rosa_rugosa	Rorug01G0453000
rosa_samantha	Rh2AG001300 Rh2BG001200 Rh2CG001200 Rh2DG001400
rosa_wichuraiana	Rw2G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	146, 818
AciI	CCGC	3 cut(s)	171, 602, 933
AclWI	GGATC	3 cut(s)	42, 66, 322
AcuI	CTGAAG	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	4 cut(s)	395, 449, 820, 901
AfiI	CCNNNNNNNGG	5 cut(s)	256, 338, 339, 361, 488
AgsI	TTSAA	2 cut(s)	575, 616
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	619, 706
AluI	AGCT	2 cut(s)	619, 706
Alw21I	GWGCWC	3 cut(s)	240, 413, 708
Alw26I	GTCTC	2 cut(s)	322, 359
AlwI	GGATC	3 cut(s)	42, 66, 322
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	216, 646, 770
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	4 cut(s)	366, 398, 845, 877
Asp700I	GAANNNNTTC	1 cut(s)	113
Asp718I	GGTACC	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	2 cut(s)	216, 604
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	118, 947
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	774
BanI	GGYRCC	2 cut(s)	146, 818
BanII	GRGCYC	1 cut(s)	708
Bbv12I	GWGCWC	3 cut(s)	240, 413, 708
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	4 cut(s)	272, 296, 539, 923
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	4 cut(s)	164, 190, 198, 224
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	322, 359
BfmI	CTRYAG	1 cut(s)	826
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	322, 432
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	216, 604
BmiI	GGNNCC	4 cut(s)	148, 261, 820, 868
BmrFI	CCNGG	2 cut(s)	322, 432
BmsI	GCATC	6 cut(s)	14, 210, 325, 447, 840, 918
BpmI	CTGGAG	2 cut(s)	540, 641
Bpu10I	CCTNAGC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 338, 339, 361, 488
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	6 cut(s)	117, 192, 238, 264, 481, 531
BseLI	CCNNNNNNNGG	5 cut(s)	256, 338, 339, 361, 488
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	4 cut(s)	86, 95, 98, 377
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	2 cut(s)	197, 338
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	218, 648, 772
BshNI	GGYRCC	2 cut(s)	146, 818
BsiHKAI	GWGCWC	3 cut(s)	240, 413, 708
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	3 cut(s)	257, 321, 822
BslFI	GGGAC	2 cut(s)	355, 464
BslI	CCNNNNNNNGG	5 cut(s)	256, 338, 339, 361, 488
BsmAI	GTCTC	2 cut(s)	322, 359
BsmFI	GGGAC	2 cut(s)	355, 464
BsnI	GGCC	3 cut(s)	218, 648, 772
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	3 cut(s)	240, 413, 708
Bsp143I	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
BspACI	CCGC	3 cut(s)	171, 602, 933
BspANI	GGCC	3 cut(s)	218, 648, 772
BspLI	GGNNCC	4 cut(s)	148, 261, 820, 868
BspPI	GGATC	3 cut(s)	42, 66, 322
BspT107I	GGYRCC	2 cut(s)	146, 818
BsrFI	RCCGGY	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	370, 598
BstC8I	GCNNGC	2 cut(s)	164, 708
BstDEI	CTNAG	3 cut(s)	45, 643, 774
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	6 cut(s)	117, 192, 238, 264, 481, 531
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	8 cut(s)	37, 61, 141, 225, 294, 330, 466, 567
BstMAI	GTCTC	2 cut(s)	322, 359
BstMBI	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 707, 716
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	320, 430
BstSFI	CTRYAG	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	218, 648, 772
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	6 cut(s)	117, 192, 238, 264, 481, 531
Cac8I	GCNNGC	2 cut(s)	164, 708
CfoI	GCGC	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	2 cut(s)	216, 604
Csp6I	GTAC	4 cut(s)	394, 448, 819, 900
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	2 cut(s)	628, 871
CviQI	GTAC	4 cut(s)	394, 448, 819, 900
DdeI	CTNAG	3 cut(s)	45, 643, 774
DpnI	GATC	8 cut(s)	36, 60, 140, 224, 293, 329, 465, 566
DpnII	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
DraIII	CACNNNGTG	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	706
Eco147I	AGGCCT	2 cut(s)	648, 772
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	751
Eco81I	CCTNAGG	1 cut(s)	774
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	708
FaeI	CATG	2 cut(s)	631, 874
FaiI	YATR	4 cut(s)	629, 747, 803, 872
FaqI	GGGAC	2 cut(s)	355, 464
FatI	CATG	2 cut(s)	627, 870
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	6 cut(s)	104, 179, 245, 251, 488, 518
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	1 cut(s)	183
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	1 cut(s)	183
GsaI	CCCAGC	2 cut(s)	201, 342
GsuI	CTGGAG	2 cut(s)	540, 641
HaeIII	GGCC	3 cut(s)	218, 648, 772
HapII	CCGG	3 cut(s)	257, 321, 822
HhaI	GCGC	1 cut(s)	793
Hin1II	CATG	2 cut(s)	631, 874
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HinfI	GANTC	2 cut(s)	495, 805
HpaII	CCGG	3 cut(s)	257, 321, 822
HphI	GGTGA	2 cut(s)	118, 947
Hpy166II	GTNNAC	4 cut(s)	190, 385, 394, 853
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	6 cut(s)	209, 244, 406, 511, 659, 913
Hpy8I	GTNNAC	4 cut(s)	190, 385, 394, 853
HpyAV	CCTTC	5 cut(s)	49, 61, 103, 589, 775
HpyCH4III	ACNGT	2 cut(s)	370, 598
HpyCH4V	TGCA	1 cut(s)	701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 707, 716
HpyF3I	CTNAG	3 cut(s)	45, 643, 774
Hsp92II	CATG	2 cut(s)	631, 874
HspAI	GCGC	1 cut(s)	791
KpnI	GGTACC	1 cut(s)	822
Kzo9I	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
LmnI	GCTCC	1 cut(s)	866
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	6 cut(s)	14, 210, 325, 447, 840, 918
MalI	GATC	8 cut(s)	36, 60, 140, 224, 293, 329, 465, 566
MboI	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
MboII	GAAGA	5 cut(s)	64, 148, 574, 928, 938
MhlI	GDGCHC	3 cut(s)	240, 413, 708
MluCI	AATT	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	282
MspI	CCGG	3 cut(s)	257, 321, 822
MspR9I	CCNGG	2 cut(s)	322, 432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	179, 707, 716
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
NlaIII	CATG	2 cut(s)	631, 874
NlaIV	GGNNCC	4 cut(s)	148, 261, 820, 868
NmeAIII	GCCGAG	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	509
PceI	AGGCCT	2 cut(s)	648, 772
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	495, 805
PkrI	GCNGC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	197, 338
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	4 cut(s)	148, 261, 820, 868
PspPI	GGNCC	2 cut(s)	216, 604
RsaI	GTAC	4 cut(s)	395, 449, 820, 901
RsaNI	GTAC	4 cut(s)	394, 448, 819, 900
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	8 cut(s)	34, 58, 138, 222, 291, 327, 463, 564
Sau96I	GGNCC	2 cut(s)	216, 604
ScrFI	CCNGG	2 cut(s)	322, 432
SduI	GDGCHC	3 cut(s)	240, 413, 708
SetI	ASST	8 cut(s)	108, 416, 462, 572, 581, 621, 708, 767
SfaNI	GCATC	6 cut(s)	14, 210, 325, 447, 840, 918
SfcI	CTRYAG	1 cut(s)	826
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	2 cut(s)	648, 772
SsiI	CCGC	3 cut(s)	171, 602, 933
SstI	GAGCTC	1 cut(s)	708
StuI	AGGCCT	2 cut(s)	648, 772
StyD4I	CCNGG	2 cut(s)	320, 430
TaaI	ACNGT	2 cut(s)	370, 598
TaqI	TCGA	9 cut(s)	141, 210, 276, 294, 462, 510, 552, 660, 750
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	495, 805
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	106, 644, 887
TspGWI	ACGGA	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.