Rh2BG001200

abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008529
Physical Location & Seq
Reverse (-)
167958 .. 170916
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG001200.1

Sequence Viewer

Length: 993 bp
ATGGCATCCTATGATGACTCAGAAAGATCAGATCGCGGCATTAAGGAGGAGGAGAAAAAAGAGCGGAAACACAATGGGAAGGAGGAAGAGGAGGGTGACAGCTTCATAGATAAGGTGAAGGATTTCATTCATGACATTGGCGAGAAGATCGAGGGAGCTATCGGATTTGGTAAGCCGACTGCAGATGTCGCTGCAATTCACATCCCTTGCATAAATCTGGAGAAGGCAGAGATTGTGGTTGATGTGCTTATTAAGAACCCAAATCCGGTGCCCATCCCGCTCATTGACATAAACTACTTGATTGAAAGTGATGGTAGGAAACTGGTGTCCGGATTGATCCCGGACGCTGGAACAATCCAGGCCCATGGAGAAGAGACTGTCAAAGTTCCACTTCACTTGATTTACGATGACATCAAGAGCACCTACAATGATATCCAGCCTGGAAGCATCATTCCCTACAGGATCAAGGTTGATCTCATTGTGGATGTCCCTGTTCTTGGCAGGCTCACTCTCCCAGTTGAGAAAACTGGAGAGATCCCCATCCCCTACAAACCTGATGTTGATGTTGACAAAATCAAGTTTCAGAAATTCTCCTTTGAAGAAACTGTTGCAGTGCTCCATTTGAAGCTCGAGAACATGAATGACTTTGACTTGGGCCTCAATGCTTTAGACTACGAGATTTGGCTCTGTGAGGTCAGCATTGGAGGCGCTGAGCTCTCCAAATCTGCCAACCTTGAAAAGAAGGGTATCACTTTTGTTGACGTTCCTATTACCTTCAGGCCAAAGGATTTTGGCTCTGCGCTCTGGGATATGATCCGGGGTAAGGGTACTGGTTATACCTTCAAAGGCCATATCGATGTTGATACTCCCTTTGGGGCCATGAAGTTACCCATTGTCAAGGAGGGTGGTACTACACGCCTCAAGAAGAGCAAGGAAGATGGTGGCGACGATGACGACGACGATGAGGTATGTAATCTTTACACTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

330

Amino Acids

36.64

Weight (kDa)

4.74

Isoelectric Point (pI)

21.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 82 - 177 9.3e-19 Late embryogenesis abundant protein
LEA_2 PF03168 207 - 302 9.3e-17 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccBSI CCGCTC 2 cut(s) 64, 280
AccII CGCG 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 3 cut(s) 36, 64, 278
AclWI GGATC 4 cut(s) 331, 470, 529, 808
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 760
AfaI GTAC 2 cut(s) 829, 910
AfiI CCNNNNNNNGG 4 cut(s) 265, 347, 497, 823
AgsI TTSAA 5 cut(s) 305, 599, 625, 737, 844
AjnI CCWGG 2 cut(s) 357, 439
AluBI AGCT 4 cut(s) 102, 158, 628, 715
AluI AGCT 4 cut(s) 102, 158, 628, 715
Alw21I GWGCWC 3 cut(s) 422, 618, 717
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 4 cut(s) 331, 470, 529, 808
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 5 cut(s) 360, 655, 779, 847, 876
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 2 cut(s) 710, 802
AspS9I GGNCC 3 cut(s) 361, 655, 876
AsuC2I CCSGG 2 cut(s) 341, 818
AsuHPI GGTGA 2 cut(s) 107, 127
AvaI CYCGRG 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 717
Bbv12I GWGCWC 3 cut(s) 422, 618, 717
BbvI GCAGC 1 cut(s) 178
BccI CCATC 4 cut(s) 281, 305, 548, 932
BciT130I CCWGG 2 cut(s) 359, 441
BcnI CCSGG 2 cut(s) 341, 818
BcoDI GTCTC 1 cut(s) 368
BfmI CTRYAG 2 cut(s) 180, 457
BfoI RGCGCY 1 cut(s) 711
BisI GCNGC 2 cut(s) 37, 192
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 2 cut(s) 38, 193
Bme1390I CCNGG 4 cut(s) 341, 359, 441, 818
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 3 cut(s) 361, 655, 876
BmiI GGNNCC 2 cut(s) 270, 877
BmrFI CCNGG 4 cut(s) 341, 359, 441, 818
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 14, 456
BmuI ACTGGG 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 239, 549
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 905
BpuMI CCSGG 2 cut(s) 341, 818
Bsa29I ATCGAT 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 364, 817
BsaWI WCCGGW 2 cut(s) 265, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 347, 497, 823
Bse1I ACTGG 5 cut(s) 327, 515, 532, 835, 988
Bse8I GATNNNNATC 1 cut(s) 539
BseAI TCCGGA 1 cut(s) 329
BseBI CCWGG 2 cut(s) 359, 441
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 2 cut(s) 364, 817
BseGI GGATG 5 cut(s) 5, 201, 273, 490, 540
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 4 cut(s) 265, 347, 497, 823
BseMII CTCAG 2 cut(s) 33, 702
BseNI ACTGG 5 cut(s) 327, 515, 532, 835, 988
BseRI GAGGAG 3 cut(s) 62, 65, 104
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 5 cut(s) 362, 657, 781, 849, 878
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 855
BsiHKAI GWGCWC 3 cut(s) 422, 618, 717
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 4 cut(s) 266, 330, 341, 817
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 4 cut(s) 265, 347, 497, 823
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 5 cut(s) 362, 657, 781, 849, 878
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 4 cut(s) 273, 422, 618, 717
Bsp13I TCCGGA 1 cut(s) 329
Bsp143I GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 3 cut(s) 36, 64, 278
BspANI GGCC 5 cut(s) 362, 657, 781, 849, 878
BspCNI CTCAG 2 cut(s) 32, 703
BspDI ATCGAT 1 cut(s) 855
BspEI TCCGGA 1 cut(s) 329
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 270, 877
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 4 cut(s) 331, 470, 529, 808
BspQI GCTCTTC 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 268
BsrBI CCGCTC 2 cut(s) 64, 280
BsrI ACTGG 5 cut(s) 327, 515, 532, 835, 988
BssECI CCNNGG 2 cut(s) 364, 817
BssMI GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 359, 441
Bst4CI ACNGT 2 cut(s) 379, 607
Bst6I CTCTTC 3 cut(s) 81, 366, 920
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 19, 711
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 5 cut(s) 5, 201, 273, 490, 540
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 711
BstHHI GCGC 2 cut(s) 710, 802
BstKTI GATC 8 cut(s) 29, 34, 150, 339, 465, 475, 537, 816
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
BstMWI GCNNNNNNNGC 3 cut(s) 188, 277, 705
BstNI CCWGG 2 cut(s) 359, 441
BstSCI CCNGG 4 cut(s) 339, 357, 439, 816
BstSFI CTRYAG 2 cut(s) 180, 457
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 365
BstYI RGATCY 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 855
BsuRI GGCC 5 cut(s) 362, 657, 781, 849, 878
BsuTUI ATCGAT 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 5 cut(s) 5, 201, 273, 490, 540
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 618, 981
Cac8I GCNNGC 1 cut(s) 503
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 710, 802
Cfr13I GGNCC 3 cut(s) 361, 655, 876
ClaI ATCGAT 1 cut(s) 855
CseI GACGC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 828, 909
CspCI CAANNNNNGTGG 4 cut(s) 378, 413, 886, 921
CviAII CATG 4 cut(s) 131, 365, 637, 880
CviQI GTAC 2 cut(s) 828, 909
DdeI CTNAG 2 cut(s) 19, 711
DpnI GATC 8 cut(s) 28, 33, 149, 338, 464, 474, 536, 815
DpnII GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
Eam1104I CTCTTC 3 cut(s) 81, 366, 920
EarI CTCTTC 3 cut(s) 81, 366, 920
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 717
Eco32I GATATC 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 715
EcoRII CCWGG 2 cut(s) 357, 439
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 4 cut(s) 134, 368, 640, 883
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 473
FatI CATG 4 cut(s) 130, 364, 636, 879
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 37, 192
FokI GGATG 4 cut(s) 188, 260, 497, 527
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 2 cut(s) 37, 192
GlaI GCGC 2 cut(s) 709, 801
GluI GCNGC 2 cut(s) 37, 192
GsuI CTGGAG 2 cut(s) 239, 549
HaeII RGCGCY 1 cut(s) 711
HaeIII GGCC 5 cut(s) 362, 657, 781, 849, 878
HapII CCGG 4 cut(s) 266, 330, 341, 817
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 710, 802
Hin1II CATG 4 cut(s) 134, 368, 640, 883
Hin6I GCGC 2 cut(s) 708, 800
HinP1I GCGC 2 cut(s) 708, 800
HincII GTYRAC 2 cut(s) 568, 760
HindII GTYRAC 2 cut(s) 568, 760
HinfI GANTC 1 cut(s) 17
HpaII CCGG 4 cut(s) 266, 330, 341, 817
HphI GGTGA 2 cut(s) 107, 127
Hpy166II GTNNAC 2 cut(s) 568, 760
Hpy188I TCNGA 4 cut(s) 22, 31, 164, 585
Hpy188III TCNNGA 6 cut(s) 131, 218, 330, 415, 631, 922
Hpy8I GTNNAC 2 cut(s) 568, 760
Hpy99I CGWCG 3 cut(s) 950, 959, 962
HpyAV CCTTC 6 cut(s) 73, 112, 217, 736, 784, 850
HpyCH4III ACNGT 2 cut(s) 379, 607
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 4 cut(s) 182, 194, 210, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 277, 705
HpyF3I CTNAG 2 cut(s) 19, 711
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 4 cut(s) 134, 368, 640, 883
HspAI GCGC 2 cut(s) 708, 800
Kpn2I TCCGGA 1 cut(s) 329
Kzo9I GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
LguI GCTCTTC 1 cut(s) 920
LmnI GCTCC 2 cut(s) 155, 621
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 14, 456
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 2 cut(s) 95, 885
MalI GATC 8 cut(s) 28, 33, 149, 338, 464, 474, 536, 815
MbiI CCGCTC 2 cut(s) 64, 280
MboI GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
MboII GAAGA 6 cut(s) 98, 157, 383, 611, 937, 947
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 4 cut(s) 273, 422, 618, 717
MluCI AATT 2 cut(s) 195, 587
MlyI GAGTC 1 cut(s) 11
MroI TCCGGA 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 42, 252
MslI CAYNNNNRTG 1 cut(s) 855
MspI CCGG 4 cut(s) 266, 330, 341, 817
MspR9I CCNGG 4 cut(s) 341, 359, 441, 818
MvaI CCWGG 2 cut(s) 359, 441
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 188, 277, 705
NciI CCSGG 2 cut(s) 341, 818
NcoI CCATGG 1 cut(s) 364
NdeII GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
NlaIII CATG 4 cut(s) 134, 368, 640, 883
NlaIV GGNNCC 2 cut(s) 270, 877
NmuCI GTSAC 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 629
PagI TCATGA 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 920
PcsI WCGNNNNNNNCGW 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 38, 193
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 357, 439
PspGI CCWGG 2 cut(s) 357, 439
PspN4I GGNNCC 2 cut(s) 270, 877
PspPI GGNCC 3 cut(s) 361, 655, 876
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 534
RsaI GTAC 2 cut(s) 829, 910
RsaNI GTAC 2 cut(s) 828, 909
RseI CAYNNNNRTG 1 cut(s) 855
SacI GAGCTC 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 2 cut(s) 42, 252
SatI GCNGC 2 cut(s) 37, 192
Sau3AI GATC 8 cut(s) 26, 31, 147, 336, 462, 472, 534, 813
Sau96I GGNCC 3 cut(s) 361, 655, 876
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 4 cut(s) 341, 359, 441, 818
SduI GDGCHC 4 cut(s) 273, 422, 618, 717
SfaNI GCATC 2 cut(s) 14, 456
SfcI CTRYAG 2 cut(s) 180, 457
Sfr274I CTCGAG 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 2 cut(s) 629, 920
SmoI CTYRAG 2 cut(s) 629, 920
Sse9I AATT 2 cut(s) 195, 587
SsiI CCGC 3 cut(s) 36, 64, 278
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 4 cut(s) 339, 357, 439, 816
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 379, 607
TaiI ACGT 1 cut(s) 765
TaqI TCGA 3 cut(s) 150, 630, 855
TasI AATT 2 cut(s) 195, 587
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 42, 252
Tru9I TTAA 2 cut(s) 42, 252
TscAI CASTG 2 cut(s) 618, 988
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 5 cut(s) 94, 115, 119, 653, 896
TspRI CASTG 2 cut(s) 618, 988
XapI RAATTY 1 cut(s) 587
XhoI CTCGAG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.