Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Forward (+)

54780717 .. 54785736

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATTCTTCGGCGGAACAGAGATAAGCCCGTCGCTGCCGGCGGCGACGGCGTCGGGAAACAACGGGCACATGATGTACGTCTTCAACCGCAACGGCGTCTGCTTGCTCTACCGAGAATGGAACCGCCCTCTCCACACCCTCAACGCTCAACAAGATCACAAGCTCATGTTCGGCCTCCTCTTCTCCCTCAAGTCCTTGACCGCTAAGATGGACCCCACCGCCGTGGAGAAAGGGAACCTAGGAGTGCCTCAATTGCCCGGTCAGGGCTGTTCGTTTCATAGCTTTCGGACCAATACCTACAAGCTTAGCTTCATGGAGAGCCCTTCTGGTATAAAGATTATATTGATTACGCATCCTAGGACTGGGGATTTGCGGGAGTCTTTGAAGTACATTTACAACTTGTATGTTGAGTATGTTGTGAAGAACCCACTCTATACTCCTGGAACTCCTATTAGGTGTGAGCTATTTAATACAACTCTTGACCAATATGTAAGGAGCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.09

Weight (kDa)

9.17

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	24 - 167	3.1e-53	Sybindin-like family
Sedlin_N	PF04628	98 - 166	3.7e-06	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	15, 44, 91, 127, 204, 222, 376
AcyI	GRCGYC	2 cut(s)	53, 99
AfaI	GTAC	2 cut(s)	80, 392
AfiI	CCNNNNNNNGG	2 cut(s)	266, 365
AgsI	TTSAA	2 cut(s)	88, 388
AjnI	CCWGG	1 cut(s)	442
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	166, 285, 307, 312, 466
AluI	AGCT	5 cut(s)	166, 285, 307, 312, 466
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspA2I	CCTAGG	2 cut(s)	241, 359
AspS9I	GGNCC	2 cut(s)	214, 291
AsuC2I	CCSGG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	214, 291
AvrII	CCTAGG	2 cut(s)	241, 359
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	3 cut(s)	66, 112, 209
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	261
BfaI	CTAG	2 cut(s)	242, 360
BisI	GCNGC	2 cut(s)	38, 45
BlnI	CCTAGG	2 cut(s)	241, 359
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	39, 46
Bme1390I	CCNGG	2 cut(s)	261, 444
Bme18I	GGWCC	2 cut(s)	214, 291
BmgT120I	GGNCC	2 cut(s)	214, 291
BmiI	GGNNCC	3 cut(s)	125, 216, 239
BmrFI	CCNGG	2 cut(s)	261, 444
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	261
BsaHI	GRCGYC	2 cut(s)	53, 99
BsaJI	CCNNGG	3 cut(s)	225, 241, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 365
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	225, 241, 359
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	266, 365
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	41, 261
BslI	CCNNNNNNNGG	2 cut(s)	266, 365
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	72, 326
Bsp143I	GATC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	7 cut(s)	15, 44, 91, 127, 204, 222, 376
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	125, 216, 239
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	225, 241, 359
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	2 cut(s)	53, 99
BssT1I	CCWWGG	2 cut(s)	241, 359
Bst2UI	CCWGG	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	53, 99
BstC8I	GCNNGC	2 cut(s)	42, 107
BstDEI	CTNAG	3 cut(s)	207, 308, 507
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 256
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	259, 442
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	42, 107
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	214, 291
CseI	GACGC	2 cut(s)	42, 88
Csp6I	GTAC	2 cut(s)	79, 391
CviAII	CATG	3 cut(s)	73, 169, 316
CviJI	RGCY	9 cut(s)	30, 166, 177, 270, 285, 307, 312, 324, 466
CviKI_1	RGCY	9 cut(s)	30, 166, 177, 270, 285, 307, 312, 324, 466
CviQI	GTAC	2 cut(s)	79, 391
DdeI	CTNAG	3 cut(s)	207, 308, 507
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	241, 359
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	214, 291
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	241, 359
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	241, 359
FaeI	CATG	3 cut(s)	76, 172, 319
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	3 cut(s)	72, 168, 315
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	38, 45
FokI	GGATG	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	38, 45
FspBI	CTAG	2 cut(s)	242, 360
GluI	GCNGC	2 cut(s)	38, 45
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	41, 261
HgaI	GACGC	2 cut(s)	42, 88
Hin1I	GRCGYC	2 cut(s)	53, 99
Hin1II	CATG	3 cut(s)	76, 172, 319
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	41, 261
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	57, 482
Hpy99I	CGWCG	3 cut(s)	37, 52, 58
HpyAV	CCTTC	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 256
HpyF3I	CTNAG	3 cut(s)	207, 308, 507
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	53, 99
Hsp92II	CATG	3 cut(s)	76, 172, 319
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	7 cut(s)	54, 251, 274, 315, 351, 429, 456
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	242, 360
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	76, 175, 436
MfeI	CAATTG	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	72, 326
MluCI	AATT	2 cut(s)	5, 254
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	141, 152, 188, 191, 200, 261
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	41, 261
MspR9I	CCNGG	2 cut(s)	261, 444
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	50, 256
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	157
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	76, 172, 319
NlaIV	GGNNCC	3 cut(s)	125, 216, 239
OliI	CACNNNNGTG	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	39, 46
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	125, 216, 239
PspPI	GGNCC	2 cut(s)	214, 291
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	2 cut(s)	80, 392
RsaNI	GTAC	2 cut(s)	79, 391
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	38, 45
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	214, 291
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	261, 444
SduI	GDGCHC	2 cut(s)	72, 326
SetI	ASST	9 cut(s)	84, 168, 243, 287, 302, 309, 314, 461, 468
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	214, 291
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	5, 254
SsiI	CCGC	7 cut(s)	15, 44, 91, 127, 204, 222, 376
SspMI	CTAG	2 cut(s)	242, 360
StyD4I	CCNGG	2 cut(s)	259, 442
StyI	CCWWGG	2 cut(s)	241, 359
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	5, 254
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	269, 304
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	214, 291
XmaJI	CCTAGG	2 cut(s)	241, 359
XspI	CTAG	2 cut(s)	242, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.