Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Forward (+)

55406801 .. 55408126

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGCAAGGTATGAGCTTGGGGTCTGTTATGGTGCTGGCGGGTCTAGCGGCTTTCATGGTGGTGCTGCCGTTAATGCTGCCTCCGCTGCCTCCTCCGCCGCTGATGTTCTTGTTCTTTCCGGTAGGGATAATGGCCGCCCTCATGTTTCTGGCTTTCTCTCCTGCCGATAACGTTATGCTTTACAGCTTTAAAGCTTTTGCTGCTGTCCTGCTTTTCTCCGGTGGTCTCCGAGTGTCAATTGTCACTACCACCACCATTGCTGGCCAAACCACCACCGTCAATGCTGATCAGACTAGCACTGTCACTGCAGGCCAAGCCATCACCACCGCTTGCATCCCAAGGCAATTCGCTGCTTGCTTGATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

12.79

Weight (kDa)

7.81

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	41, 50, 86, 98, 101, 138, 330
AclI	AACGTT	1 cut(s)	174
AcoI	YGGCCR	2 cut(s)	135, 265
AluBI	AGCT	3 cut(s)	18, 189, 197
AluI	AGCT	3 cut(s)	18, 189, 197
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	3 cut(s)	135, 265, 313
ApeKI	GCWGC	5 cut(s)	67, 79, 88, 203, 353
AsuHPI	GGTGA	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	54, 66, 75, 190, 340
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	47, 297
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	8 cut(s)	51, 68, 80, 89, 101, 138, 204, 354
BlsI	GCNGC	8 cut(s)	52, 69, 81, 90, 102, 139, 205, 355
BmsI	GCATC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	2 cut(s)	121, 221
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	5 cut(s)	54, 66, 75, 190, 340
BshFI	GGCC	3 cut(s)	137, 267, 315
BsiSI	CCGG	2 cut(s)	122, 222
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	137, 267, 315
Bso31I	GGTCTC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	7 cut(s)	41, 50, 86, 98, 101, 138, 330
BspANI	GGCC	3 cut(s)	137, 267, 315
BspMAI	CTGCAG	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	280, 304
BstC8I	GCNNGC	5 cut(s)	39, 265, 313, 334, 358
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 76, 85, 88, 97, 203, 317
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	5 cut(s)	54, 66, 75, 190, 340
BsuRI	GGCC	3 cut(s)	137, 267, 315
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	300, 306
Cac8I	GCNNGC	5 cut(s)	39, 265, 313, 334, 358
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	58, 145
CviJI	RGCY	9 cut(s)	18, 53, 137, 155, 189, 197, 267, 315, 320
CviKI_1	RGCY	9 cut(s)	18, 53, 137, 155, 189, 197, 267, 315, 320
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraI	TTTAAA	1 cut(s)	193
EaeI	YGGCCR	2 cut(s)	135, 265
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	61, 148
FaiI	YATR	5 cut(s)	14, 32, 59, 146, 179
FatI	CATG	2 cut(s)	57, 144
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	8 cut(s)	51, 68, 80, 89, 101, 138, 204, 354
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	8 cut(s)	51, 68, 80, 89, 101, 138, 204, 354
FspBI	CTAG	2 cut(s)	47, 297
GluI	GCNGC	8 cut(s)	51, 68, 80, 89, 101, 138, 204, 354
HaeIII	GGCC	3 cut(s)	137, 267, 315
HapII	CCGG	2 cut(s)	122, 222
Hin1II	CATG	2 cut(s)	61, 148
HindIII	AAGCTT	1 cut(s)	195
HpaII	CCGG	2 cut(s)	122, 222
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	233, 294
HpyCH4III	ACNGT	2 cut(s)	280, 304
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	311, 336
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 76, 85, 88, 97, 203, 317
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	61, 148
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	8 cut(s)	23, 135, 137, 177, 224, 235, 249, 297
Lsp1109I	GCAGC	5 cut(s)	54, 66, 75, 190, 340
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	47, 297
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	244, 304
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MfeI	CAATTG	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	240, 347
MluNI	TGGCCA	1 cut(s)	267
MnlI	CCTC	4 cut(s)	93, 102, 105, 152
Mox20I	TGGCCA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	2 cut(s)	74, 192
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	88, 103
MspI	CCGG	2 cut(s)	122, 222
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	7 cut(s)	47, 76, 85, 88, 97, 203, 317
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	61, 148
NmuCI	GTSAC	2 cut(s)	244, 304
PkrI	GCNGC	8 cut(s)	52, 69, 81, 90, 102, 139, 205, 355
Psp1406I	AACGTT	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	74, 192
SatI	GCNGC	8 cut(s)	51, 68, 80, 89, 101, 138, 204, 354
Sau3AI	GATC	1 cut(s)	289
SetI	ASST	5 cut(s)	13, 20, 177, 191, 199
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	240, 347
SsiI	CCGC	7 cut(s)	41, 50, 86, 98, 101, 138, 330
SspMI	CTAG	2 cut(s)	47, 297
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	280, 304
TaiI	ACGT	1 cut(s)	177
TasI	AATT	2 cut(s)	240, 347
TauI	GCSGC	3 cut(s)	53, 103, 140
Tru1I	TTAA	2 cut(s)	74, 192
Tru9I	TTAA	2 cut(s)	74, 192
TscAI	CASTG	2 cut(s)	307, 313
TseFI	GTSAC	2 cut(s)	244, 304
TseI	GCWGC	5 cut(s)	67, 79, 88, 203, 353
Tsp45I	GTSAC	2 cut(s)	244, 304
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	307, 313
XspI	CTAG	2 cut(s)	47, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.