Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Reverse (-)

10508152 .. 10509892

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATTTTGATGTTCCTGAAGCAGATCGCTCAAGACTAGTACTGCTACAGGGTTTTATTCATTTGCCAGATCGCTCGTCAACAAGTTGCGCCATGGAGATGAAAACAAAAAACATTTCTGGTGCCCAAACCCTAGATCACTCCCAAGGGGATCAAGGAACGAAGGTAGAGTATTATCATCAGATTCAGAGACAAGGAAAGGCAATAGAATATCGGCAAACACTATCTCACGGTGGAGGGGCTGTCAGAAGAATGCTGCCGGCCAGCTACTTTAGCTTGGAGTCGTTGCTTTTGCTTGTATGCCTCGCGGCGACTCTGCTCATCCTTCCTTTGATAGTTCCGCCGCTACCTCCCCCGCCTTTCATGCTGCTGTTGCTTCCCATTGGCATTCTGGGCGTGCTTATGATCTTGGCTTTCATGCCGTCGAATGTGAGGGATTTAACTTATACATACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.87

Weight (kDa)

7.82

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	1 cut(s)	308
AciI	CCGC	4 cut(s)	308, 341, 344, 356
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	42
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	2 cut(s)	267, 276
AluI	AGCT	2 cut(s)	267, 276
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	256, 367
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	243, 354
BceAI	ACGGC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	38, 134, 457
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	4 cut(s)	257, 309, 344, 368
BlsI	GCNGC	4 cut(s)	258, 310, 345, 369
BmcAI	AGTACT	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	93, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse118I	RCCGGY	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	93, 145
BseGI	GGATG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	243, 354
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	2 cut(s)	258, 387
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	25, 70, 136, 151, 405
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	4 cut(s)	308, 341, 344, 356
BspANI	GGCC	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	93, 145
BssMI	GATC	5 cut(s)	25, 70, 136, 151, 405
BssT1I	CCWWGG	2 cut(s)	93, 145
Bst4CI	ACNGT	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	261, 265, 398
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	5 cut(s)	28, 73, 139, 154, 408
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	5 cut(s)	25, 70, 136, 151, 405
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 364, 373, 393
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	243, 354
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	261, 265, 398
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	3 cut(s)	94, 364, 418
CviJI	RGCY	5 cut(s)	242, 263, 267, 276, 413
CviKI_1	RGCY	5 cut(s)	242, 263, 267, 276, 413
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	5 cut(s)	27, 72, 138, 153, 407
DpnII	GATC	5 cut(s)	25, 70, 136, 151, 405
EaeI	YGGCCR	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	93, 145
Eco57I	CTGAAG	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	93, 145
ErhI	CCWWGG	2 cut(s)	93, 145
FaeI	CATG	3 cut(s)	97, 367, 421
FaiI	YATR	7 cut(s)	95, 301, 365, 404, 419, 447, 451
FatI	CATG	3 cut(s)	93, 363, 417
FauI	CCCGC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	257, 309, 344, 368
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	4 cut(s)	257, 309, 344, 368
FspBI	CTAG	3 cut(s)	38, 134, 457
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	4 cut(s)	257, 309, 344, 368
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	97, 367, 421
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	184, 281, 313
HpaII	CCGG	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	183, 189, 248
Hpy188III	TCNNGA	2 cut(s)	17, 33
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	157, 335
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 364, 373, 393
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	97, 367, 421
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	25, 70, 136, 151, 405
LpnPI	CCDG	7 cut(s)	30, 35, 81, 105, 273, 277, 377
Lsp1109I	GCAGC	2 cut(s)	243, 354
MaeI	CTAG	3 cut(s)	38, 134, 457
MaeII	ACGT	1 cut(s)	453
MalI	GATC	5 cut(s)	27, 72, 138, 153, 407
MboI	GATC	5 cut(s)	25, 70, 136, 151, 405
MboII	GAAGA	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	290, 307
MnlI	CCTC	4 cut(s)	230, 314, 360, 426
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	260
Mva1269I	GAATGC	2 cut(s)	258, 387
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	273, 364, 373, 393
NaeI	GCCGGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	5 cut(s)	25, 70, 136, 151, 405
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	97, 367, 421
NlaIV	GGNNCC	1 cut(s)	124
PctI	GAATGC	2 cut(s)	258, 387
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	258, 310, 345, 369
PleI	GAGTC	2 cut(s)	289, 307
PpsI	GAGTC	2 cut(s)	289, 307
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	4 cut(s)	257, 309, 344, 368
Sau3AI	GATC	5 cut(s)	25, 70, 136, 151, 405
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	2 cut(s)	290, 307
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	168, 269, 278, 352, 456
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	4 cut(s)	308, 341, 344, 356
SspMI	CTAG	3 cut(s)	38, 134, 457
StyI	CCWWGG	2 cut(s)	93, 145
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	2 cut(s)	311, 346
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TseI	GCWGC	2 cut(s)	256, 367
TspDTI	ATGAA	5 cut(s)	17, 50, 116, 352, 406
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	3 cut(s)	38, 134, 457
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.