Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Forward (+)

10817820 .. 10818561

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1087100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAATTGGATTCATGGGTGGTGTATGTACTTCCTCCAAGAGACTACTCAACGACAATATAGGTGTGTGCAGAGTTTGATGTTGAGGTACTTTAGCATCATATCGGTCATGTTTTTGATCGTTTTGACTGTGTTTCTTGTGGTACTACCGCTGCTTTTGCCACCACTACCACCACCGCCTTTAGTGCTTCTCTTTATTCCGGTTCTGATCATGGCAGTTCTCATTTTACTGGCGTTTTCTCACTTGTCGCAAGTTCCAAATATGGCCGTCGTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016049 GO:0032501 GO:0032502 GO:0033993 GO:0035265 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

8.84

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 176
AcoI	YGGCCR	1 cut(s)	264
AfaI	GTAC	3 cut(s)	29, 89, 144
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmsI	GCATC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	117, 207
BspACI	CCGC	2 cut(s)	149, 176
BspANI	GGCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	117, 207
Bst4CI	ACNGT	1 cut(s)	130
BstKTI	GATC	2 cut(s)	120, 210
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	117, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 184
BstV1I	GCAGC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	28, 88, 143
CviAII	CATG	3 cut(s)	14, 109, 211
CviJI	RGCY	1 cut(s)	266
CviKI_1	RGCY	1 cut(s)	266
CviQI	GTAC	3 cut(s)	28, 88, 143
DpnI	GATC	2 cut(s)	119, 209
DpnII	GATC	2 cut(s)	117, 207
EaeI	YGGCCR	1 cut(s)	264
FaeI	CATG	3 cut(s)	17, 112, 214
FaiI	YATR	7 cut(s)	15, 26, 60, 101, 110, 212, 263
FatI	CATG	3 cut(s)	13, 108, 210
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	3 cut(s)	17, 112, 214
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 184
Hsp92II	CATG	3 cut(s)	17, 112, 214
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	117, 207
LpnPI	CCDG	2 cut(s)	213, 215
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	105
MalI	GATC	2 cut(s)	119, 209
MboI	GATC	2 cut(s)	117, 207
MluCI	AATT	1 cut(s)	4
MnlI	CCTC	2 cut(s)	44, 78
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	157, 184
NdeII	GATC	2 cut(s)	117, 207
NlaIII	CATG	3 cut(s)	17, 112, 214
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	153
RsaI	GTAC	3 cut(s)	29, 89, 144
RsaNI	GTAC	3 cut(s)	28, 88, 143
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	117, 207
SetI	ASST	2 cut(s)	65, 89
SfaNI	GCATC	1 cut(s)	105
SgeI	CNNG	9 cut(s)	26, 50, 121, 149, 212, 223, 242, 256, 263
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	2 cut(s)	149, 176
TaaI	ACNGT	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.