Rorug01G0054300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008367
Physical Location & Seq
Forward (+)
8969605 .. 8972419
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0054300.1

Sequence Viewer

Length: 519 bp
ATGCTGTTGAACCATGTCACTCTGGAGCTGGATAAGCTGGTCAATAGTGGTAGTGGATCTGGATGCACCCTCAGTATCTGCCACACCATCTCTGCCCTTCTCCAACTGCTCAAACTTGTTGATTCCATCTGTATAGTAGGCGACCACACTTTCCAATCCCTCCTTTGTGAGAGCAAAGGCTTCTACTTTTGTAGGACATTCTACATATTTCTCCAAGATAGTAGGATGTCTCAACTCAGGGGCAGTGGGGTTTGCCCAGGTCAGAAGCTCTTCCCCAATGACACCGTGTTTCTTTATCATTCTTTCAACATCGCCTCTCTCCGTTTCTTTTTTTCCTTCATTGTAAGTCGTCTTAGTCACTGTAATTTCACCTTCTACAACGATGAGCATCCGATCAATTACGCTAAGTGGATAGAAGATGCAGCTATGCTGCGGGAGTACCAGCGGCTCAAGAGACATACAGAAGCGACTCAACACGTCTTCATTAACGTCTTTAAGTACAGGAACCTATATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.99

Weight (kDa)

8.48

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 433, 445
AclWI GGATC 1 cut(s) 64
AfaI GTAC 2 cut(s) 440, 500
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 10, 307
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 28, 37, 268, 425
AluI AGCT 4 cut(s) 28, 37, 268, 425
Alw26I GTCTC 2 cut(s) 234, 448
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 422, 430
Asp700I GAANNNNTTC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 417, 434
BccI CCATC 2 cut(s) 95, 134
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 234, 448
BisI GCNGC 3 cut(s) 423, 431, 446
BlsI GCNGC 3 cut(s) 424, 432, 447
Bme1390I CCNGG 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 53, 397, 409
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 3 cut(s) 68, 231, 388
BseJI GATNNNNATC 1 cut(s) 387
BseMII CTCAG 2 cut(s) 85, 250
BseXI GCAGC 2 cut(s) 417, 434
BsmAI GTCTC 2 cut(s) 234, 448
Bsp143I GATC 2 cut(s) 56, 393
BspACI CCGC 2 cut(s) 433, 445
BspCNI CTCAG 2 cut(s) 84, 249
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 56, 393
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 286, 362
Bst6I CTCTTC 1 cut(s) 275
BstDEI CTNAG 4 cut(s) 71, 236, 353, 405
BstF5I GGATG 3 cut(s) 68, 231, 388
BstKTI GATC 2 cut(s) 59, 396
BstMAI GTCTC 2 cut(s) 234, 448
BstMBI GATC 2 cut(s) 56, 393
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 417, 434
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 295
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 3 cut(s) 68, 231, 388
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 250, 358
CaiI CAGNNNCTG 1 cut(s) 78
Csp6I GTAC 2 cut(s) 439, 499
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 28, 37, 180, 268, 425, 448
CviKI_1 RGCY 6 cut(s) 28, 37, 180, 268, 425, 448
CviQI GTAC 2 cut(s) 439, 499
DdeI CTNAG 4 cut(s) 71, 236, 353, 405
DpnI GATC 2 cut(s) 58, 395
DpnII GATC 2 cut(s) 56, 393
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 17
FaiI YATR 9 cut(s) 15, 134, 206, 428, 459, 511, 513, 515, 517
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 423, 431, 446
FokI GGATG 3 cut(s) 75, 238, 375
Fsp4HI GCNGC 3 cut(s) 423, 431, 446
GluI GCNGC 3 cut(s) 423, 431, 446
GsuI CTGGAG 1 cut(s) 44
Hin1II CATG 1 cut(s) 17
HinfI GANTC 2 cut(s) 122, 469
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 264, 393
Hpy188III TCNNGA 3 cut(s) 23, 60, 451
HpyAV CCTTC 3 cut(s) 107, 346, 382
HpyCH4III ACNGT 2 cut(s) 286, 362
HpyCH4IV ACGT 2 cut(s) 477, 489
HpyCH4V TGCA 2 cut(s) 66, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 4 cut(s) 71, 236, 353, 405
HpySE526I ACGT 2 cut(s) 477, 489
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 2 cut(s) 56, 393
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 9 cut(s) 8, 14, 23, 45, 223, 243, 270, 455, 487
Lsp1109I GCAGC 2 cut(s) 417, 434
LweI GCATC 3 cut(s) 53, 397, 409
MaeII ACGT 2 cut(s) 477, 489
MaeIII GTNAC 2 cut(s) 16, 356
MalI GATC 2 cut(s) 58, 395
MboI GATC 2 cut(s) 56, 393
MboII GAAGA 3 cut(s) 262, 428, 472
MflI RGATCY 1 cut(s) 56
MluCI AATT 2 cut(s) 364, 397
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 80, 170, 325
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 2 cut(s) 486, 495
MspA1I CMGCKG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 56, 393
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 16, 356
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 424, 432, 447
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 2 cut(s) 440, 500
RsaNI GTAC 2 cut(s) 439, 499
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 486, 495
SatI GCNGC 3 cut(s) 423, 431, 446
Sau3AI GATC 2 cut(s) 56, 393
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 258
SetI ASST 9 cut(s) 30, 39, 262, 270, 374, 427, 480, 492, 510
SfaNI GCATC 3 cut(s) 53, 397, 409
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 2 cut(s) 364, 397
SsiI CCGC 2 cut(s) 433, 445
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 286, 362
TaiI ACGT 2 cut(s) 480, 492
TasI AATT 2 cut(s) 364, 397
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 486, 495
Tru9I TTAA 2 cut(s) 486, 495
TscAI CASTG 2 cut(s) 250, 365
TseFI GTSAC 2 cut(s) 16, 356
TseI GCWGC 2 cut(s) 422, 430
Tsp45I GTSAC 2 cut(s) 16, 356
TspDTI ATGAA 2 cut(s) 328, 472
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 250, 365
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.