Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Reverse (-)

172158 .. 172571

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAATTTGAAGTTCCTGAAGCTGCAGACGTAAGACTTTCAAAAGGCTTTATTGACTTGCAAGCTCATTGTTCAAGTTGCCTCCATATGGATGTCAAAGCAAGACCCCAAGGGGATGAAGGACATAAAATAGAGCATCAGCAGCATCATCAAAGATCATCTTTGTATCATCGATCACTATCACACGGCAGAGGTAGTGGCAGAAGACTGCTTCCAGCAAGCTACTTTAGCCTCGAGTCGTTGCTTTTGCTTGTATGCCTCACGGCGACTCTGCTGATCCTGCCGTTGATACTTCCACCATTGCCTCCCCCGCCTTTCATGCTGCTGTTGCTTCCCATTGGCATTCTAGCGGTGCTTATGATCTTGGCTTTCATGCCTTCTAATGTGAGGGATTTGACTTATACATACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

8.54

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	311, 350
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	11, 42, 75
AluBI	AGCT	3 cut(s)	23, 65, 222
AluI	AGCT	3 cut(s)	23, 65, 222
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	23, 142, 322
ApoI	RAATTY	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	10, 154, 309
BceAI	ACGGC	3 cut(s)	202, 268, 279
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	3 cut(s)	24, 143, 323
BlsI	GCNGC	3 cut(s)	25, 144, 324
BmeT110I	CYCGRG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	145, 154
BpiI	GAAGAC	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	97, 121
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	10, 154, 309
BshVI	ATCGAT	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	155, 173, 276, 360
BspACI	CCGC	2 cut(s)	311, 350
BspDI	ATCGAT	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	155, 173, 276, 360
BssT1I	CCWWGG	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	63, 220
BstF5I	GGATG	2 cut(s)	97, 121
BstKTI	GATC	4 cut(s)	158, 176, 279, 363
BstMBI	GATC	4 cut(s)	155, 173, 276, 360
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 228, 280, 310, 319, 328
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	10, 154, 309
BstV2I	GAAGAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	97, 121
Cac8I	GCNNGC	2 cut(s)	63, 220
ClaI	ATCGAT	1 cut(s)	172
CviAII	CATG	2 cut(s)	319, 373
CviJI	RGCY	6 cut(s)	23, 48, 65, 222, 231, 368
CviKI_1	RGCY	6 cut(s)	23, 48, 65, 222, 231, 368
DpnI	GATC	4 cut(s)	157, 175, 278, 362
DpnII	GATC	4 cut(s)	155, 173, 276, 360
Eco130I	CCWWGG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	322, 376
FaiI	YATR	9 cut(s)	87, 89, 126, 256, 320, 359, 374, 402, 406
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	2 cut(s)	318, 372
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	24, 143, 323
FokI	GGATG	2 cut(s)	104, 128
Fsp4HI	GCNGC	3 cut(s)	24, 143, 323
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	3 cut(s)	24, 143, 323
Hin1II	CATG	2 cut(s)	322, 376
HinfI	GANTC	2 cut(s)	236, 268
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	113, 387
HpyCH4IV	ACGT	2 cut(s)	30, 408
HpyCH4V	TGCA	2 cut(s)	26, 61
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 228, 280, 310, 319, 328
HpySE526I	ACGT	2 cut(s)	30, 408
Hsp92II	CATG	2 cut(s)	322, 376
Kzo9I	GATC	4 cut(s)	155, 173, 276, 360
LpnPI	CCDG	3 cut(s)	30, 228, 293
Lsp1109I	GCAGC	3 cut(s)	10, 154, 309
LweI	GCATC	2 cut(s)	145, 154
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	30, 408
MalI	GATC	4 cut(s)	157, 175, 278, 362
MboI	GATC	4 cut(s)	155, 173, 276, 360
MboII	GAAGA	1 cut(s)	216
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	245, 262
MnlI	CCTC	6 cut(s)	92, 185, 242, 269, 315, 381
MslI	CAYNNNNRTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	342
MwoI	GCNNNNNNNGC	6 cut(s)	142, 228, 280, 310, 319, 328
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	4 cut(s)	155, 173, 276, 360
NlaIII	CATG	2 cut(s)	322, 376
PaeR7I	CTCGAG	1 cut(s)	233
PctI	GAATGC	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	25, 144, 324
PleI	GAGTC	2 cut(s)	244, 262
PpsI	GAGTC	2 cut(s)	244, 262
Ppu21I	YACGTR	1 cut(s)	409
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	3 cut(s)	24, 143, 323
Sau3AI	GATC	4 cut(s)	155, 173, 276, 360
SchI	GAGTC	2 cut(s)	245, 262
SetI	ASST	6 cut(s)	25, 33, 67, 196, 224, 411
SfaNI	GCATC	2 cut(s)	145, 154
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	2 cut(s)	311, 350
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	2 cut(s)	33, 411
TaqI	TCGA	2 cut(s)	172, 234
TasI	AATT	1 cut(s)	5
TseI	GCWGC	3 cut(s)	23, 142, 322
TspDTI	ATGAA	4 cut(s)	17, 132, 307, 361
XapI	RAATTY	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.