Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Reverse (-)

150629 .. 154363

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAATTTGAAGTTCCTGAAGCAGACGTAAGACTTTCAAAAGGCTTTATTGACTTGCAAGCTCATTGTTCAAGTTGCCTTGATATGGATGTCAAAGCAAGACCCCAAGGGGATGAAGGACATAAAATAGAGCATCAGCATTATCATCAAAGATCATCTTCGTATCATCGATCACTATCACACGGCAGAGGTAGTGGCAGAAGACTGCTTCCAGCAAGCTACTTTAGCCTCGAGTCGTTGCTTTTGCTTGTATGCCTCACGGCGACTCTGCTGATCCTGCCGTTGATACTTCCACCATTGCCTCCCCCGCCTTTCATGCTGCTGTTGCTTCCCATTGGCATTCTAGGGGTGCTTATGATCTTGGCTTTCATGCCTTCTAATGTGAGGGATTTGACTTATACATACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

7.81

Isoelectric Point (pI)

69.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	11, 39, 72
AluBI	AGCT	2 cut(s)	62, 219
AluI	AGCT	2 cut(s)	62, 219
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	306
BceAI	ACGGC	3 cut(s)	199, 265, 276
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	94, 118
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	152, 170, 273, 357
BspACI	CCGC	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	169
BspPI	GGATC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	152, 170, 273, 357
BssT1I	CCWWGG	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	60, 217
BstF5I	GGATG	2 cut(s)	94, 118
BstKTI	GATC	4 cut(s)	155, 173, 276, 360
BstMBI	GATC	4 cut(s)	152, 170, 273, 357
BstMWI	GCNNNNNNNGC	5 cut(s)	225, 277, 307, 316, 325
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	94, 118
Cac8I	GCNNGC	2 cut(s)	60, 217
ClaI	ATCGAT	1 cut(s)	169
CviAII	CATG	2 cut(s)	316, 370
CviJI	RGCY	5 cut(s)	45, 62, 219, 228, 365
CviKI_1	RGCY	5 cut(s)	45, 62, 219, 228, 365
DpnI	GATC	4 cut(s)	154, 172, 275, 359
DpnII	GATC	4 cut(s)	152, 170, 273, 357
Eco130I	CCWWGG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	319, 373
FaiI	YATR	8 cut(s)	86, 123, 253, 317, 356, 371, 399, 403
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	2 cut(s)	315, 369
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	2 cut(s)	101, 125
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	319, 373
HinfI	GANTC	2 cut(s)	233, 265
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	110, 384
HpyCH4IV	ACGT	2 cut(s)	27, 405
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	5 cut(s)	225, 277, 307, 316, 325
HpySE526I	ACGT	2 cut(s)	27, 405
Hsp92II	CATG	2 cut(s)	319, 373
Kzo9I	GATC	4 cut(s)	152, 170, 273, 357
LpnPI	CCDG	3 cut(s)	30, 225, 290
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	2 cut(s)	27, 405
MalI	GATC	4 cut(s)	154, 172, 275, 359
MboI	GATC	4 cut(s)	152, 170, 273, 357
MboII	GAAGA	2 cut(s)	150, 213
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	242, 259
MnlI	CCTC	5 cut(s)	182, 239, 266, 312, 378
Mva1269I	GAATGC	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	225, 277, 307, 316, 325
NdeII	GATC	4 cut(s)	152, 170, 273, 357
NlaIII	CATG	2 cut(s)	319, 373
PaeR7I	CTCGAG	1 cut(s)	230
PctI	GAATGC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	2 cut(s)	241, 259
PpsI	GAGTC	2 cut(s)	241, 259
Ppu21I	YACGTR	1 cut(s)	406
PspXI	VCTCGAGB	1 cut(s)	230
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	4 cut(s)	152, 170, 273, 357
SchI	GAGTC	2 cut(s)	242, 259
SetI	ASST	5 cut(s)	30, 64, 193, 221, 408
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	106
TaiI	ACGT	2 cut(s)	30, 408
TaqI	TCGA	2 cut(s)	169, 231
TasI	AATT	1 cut(s)	5
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	17, 129, 304, 358
XapI	RAATTY	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.