Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Reverse (-)

91334 .. 91792

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom290g00090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATTTTGATGTTCCTGAAGTAGATCGGCTAAGACTAGTACTGTCACAGGGTTTTATTCATTTGCCGGATCGCTCTTCAACAAGTTGCGTTATGGATATTAAAACTAGAAAAGTTTCTGGTGCCCATATGCTAGAGCCCTCCCCAACGGATCATGGACAGAAAGTGGAGTATTATCATCAGATTCAGAGACAAGGAAAGGCAACAGAATACCGGCAAACCTTATCTCACGGTAGAGGGACTGGCAGAAGACTGCTGCCGGCCAGCTACTTTAGCTTGGAGTCGTTGCTTTTGCTTGTATGCCTCACAGCGACTCTGCTGATCCTTCCTTTGATACTTCCGCCACTACCTCCCCCGCCTTTGATGCTGCTGTTGCTTCCCATTGGCATTCTAGCCGTGCTTATGATCTTGGCTTTCATGCCGTCTAATGTGAGGGATTTGACTTATACATACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.06

Weight (kDa)

9.03

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	2 cut(s)	341, 356
AclWI	GGATC	3 cut(s)	78, 159, 316
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	81
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	2 cut(s)	267, 276
AluI	AGCT	2 cut(s)	267, 276
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	3 cut(s)	78, 159, 316
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	256, 367
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	243, 354
BceAI	ACGGC	2 cut(s)	380, 406
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	5 cut(s)	38, 108, 134, 392, 457
BisI	GCNGC	2 cut(s)	257, 368
BlsI	GCNGC	2 cut(s)	258, 369
BmcAI	AGTACT	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	256
Bse118I	RCCGGY	2 cut(s)	213, 259
Bse1I	ACTGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	243, 354
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	68, 214, 260
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	127, 141
Bsp143I	GATC	5 cut(s)	25, 70, 151, 321, 405
BspACI	CCGC	2 cut(s)	341, 356
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	78, 159, 316
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	2 cut(s)	213, 259
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	2 cut(s)	213, 259
BssMI	GATC	5 cut(s)	25, 70, 151, 321, 405
Bst4CI	ACNGT	2 cut(s)	45, 233
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	261, 265
BstDEI	CTNAG	1 cut(s)	32
BstKTI	GATC	5 cut(s)	28, 73, 154, 324, 408
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	5 cut(s)	25, 70, 151, 321, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 364, 373
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	243, 354
BstV2I	GAAGAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	261, 265
Cfr10I	RCCGGY	2 cut(s)	213, 259
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	155, 418
CviJI	RGCY	7 cut(s)	31, 139, 263, 267, 276, 395, 413
CviKI_1	RGCY	7 cut(s)	31, 139, 263, 267, 276, 395, 413
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	5 cut(s)	27, 72, 153, 323, 407
DpnII	GATC	5 cut(s)	25, 70, 151, 321, 405
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	158, 421
FaiI	YATR	9 cut(s)	95, 129, 131, 156, 301, 404, 419, 447, 451
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	154, 417
FauI	CCCGC	1 cut(s)	363
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	257, 368
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	257, 368
FspBI	CTAG	5 cut(s)	38, 108, 134, 392, 457
GluI	GCNGC	2 cut(s)	257, 368
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	3 cut(s)	68, 214, 260
Hin1II	CATG	2 cut(s)	158, 421
HinfI	GANTC	3 cut(s)	184, 281, 313
HpaII	CCGG	3 cut(s)	68, 214, 260
Hpy188I	TCNGA	2 cut(s)	183, 189
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	45, 233
HpyCH4IV	ACGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 364, 373
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	158, 421
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	25, 70, 151, 321, 405
LguI	GCTCTTC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	30, 35, 81, 105, 227, 228, 273, 277
Lsp1109I	GCAGC	2 cut(s)	243, 354
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	5 cut(s)	38, 108, 134, 392, 457
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	5 cut(s)	27, 72, 153, 323, 407
MboI	GATC	5 cut(s)	25, 70, 151, 321, 405
MboII	GAAGA	2 cut(s)	69, 261
MhlI	GDGCHC	2 cut(s)	127, 141
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	290, 307
MnlI	CCTC	5 cut(s)	151, 230, 314, 360, 426
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	102
MspI	CCGG	3 cut(s)	68, 214, 260
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	273, 364, 373
NaeI	GCCGGC	1 cut(s)	261
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	5 cut(s)	25, 70, 151, 321, 405
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	158, 421
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	387
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	258, 369
PleI	GAGTC	2 cut(s)	289, 307
PpsI	GAGTC	2 cut(s)	289, 307
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	257, 368
Sau3AI	GATC	5 cut(s)	25, 70, 151, 321, 405
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	2 cut(s)	290, 307
SduI	GDGCHC	2 cut(s)	127, 141
SetI	ASST	5 cut(s)	224, 269, 278, 352, 456
SfaNI	GCATC	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	2 cut(s)	341, 356
SspMI	CTAG	5 cut(s)	38, 108, 134, 392, 457
TaaI	ACNGT	2 cut(s)	45, 233
TaiI	ACGT	1 cut(s)	456
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	256, 367
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	3 cut(s)	17, 50, 406
TspGWI	ACGGA	1 cut(s)	164
XapI	RAATTY	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	5 cut(s)	38, 108, 134, 392, 457
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.