Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008367

Physical Location & Seq

Genomic Coordinates Forward (+)

22129505 .. 22130472

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATTCGAGAAATCTCAAACTTACAAAAAGATATTATAAACATTCAAGACAGTTATTCGAACAACCGAGTCATGGACGTCGGAAGAAACAACCGGAAAAACATGAGCTTTCGAAGTTCGCCGGAGAAAAGCAAGCAAGAGTTACGGCGGAGTTTCTCGGCGCAGAAAAGGATGATGATCCCGGCGAATTATTTCAGTTTAGAGTCTCTGTTCCTATTGGTTGGTCTAACGGCATCTCTGTTAATACTTCCGTTAGTTTTGCCGCCGTTACCTCCGCCTCCGTTTATGCTGCTATTGGTTCCCATTGGGATTATGGTTTTACTCGTCGTTCTTGCCTTCATGCCTTCTTCTCATTCTAATGCTAATACAGATGTAACTTGCAATTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0008150 GO:0008284 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009741 GO:0009825 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035265 GO:0040007 GO:0040008 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0048518 GO:0048522 GO:0048589 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071369 GO:0071495 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.7

Weight (kDa)

9.89

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44080 AT3G59900
malus_domestica	MD02G1000700.v1.1 MD14G1087100.v1.1 MD15G1142100.v1.1
prunus_persica	Prupe.2G039300_v2.0.a1 Prupe.7G039300_v2.0.a1 Prupe.7G039400_v2.0.a1 Prupe.7G271100_v2.0.a1
pyrus_communis	pycom290g00090
rosa_chinensis	RchiOBHm_Chr1g0324951 RchiOBHm_Chr1g0325751 RchiOBHm_Chr2g0084361
rosa_laevigata	RLG00000030108
rosa_roxburghii	Rroxscaffold_2G00156160
rosa_rugosa	Rorug01G0054300 Rorug01G0453000 Rorug01G0453000
rosa_samantha	Rh2AG001200 Rh2BG001000 Rh2CG001100 Rh2DG001300
rosa_wichuraiana	Rw2G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AatII	GACGTC	1 cut(s)	81
AciI	CCGC	3 cut(s)	148, 263, 275
AclWI	GGATC	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	182
AsuII	TTCGAA	2 cut(s)	59, 112
BbvI	GCAGC	1 cut(s)	276
BceAI	ACGGC	3 cut(s)	161, 246, 250
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	263, 290
BlsI	GCNGC	2 cut(s)	264, 291
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	242
Bpu14I	TTCGAA	2 cut(s)	59, 112
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	176
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	94, 122, 182
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	210
Bsp119I	TTCGAA	2 cut(s)	59, 112
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	148, 263, 275
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	2 cut(s)	59, 112
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	2 cut(s)	59, 112
BstC8I	GCNNGC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	4 cut(s)	73, 103, 340, 388
CviJI	RGCY	1 cut(s)	108
CviKI_1	RGCY	1 cut(s)	108
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EciI	GGCGGA	2 cut(s)	163, 264
FaeI	CATG	4 cut(s)	76, 106, 343, 391
FaiI	YATR	7 cut(s)	38, 74, 104, 287, 314, 341, 389
FatI	CATG	4 cut(s)	72, 102, 339, 387
Fnu4HI	GCNGC	2 cut(s)	263, 290
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	263, 290
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	263, 290
HapII	CCGG	3 cut(s)	94, 122, 182
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	76, 106, 343, 391
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	4, 69, 203
HpaII	CCGG	3 cut(s)	94, 122, 182
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	8, 47
Hpy99I	CGWCG	2 cut(s)	83, 329
HpyAV	CCTTC	2 cut(s)	346, 354
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	76, 106, 343, 391
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	3 cut(s)	107, 135, 195
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	141, 267, 373
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	2 cut(s)	96, 339
MluCI	AATT	2 cut(s)	187, 382
MlyI	GAGTC	2 cut(s)	78, 212
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	282, 288
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	3 cut(s)	94, 122, 182
MspR9I	CCNGG	1 cut(s)	182
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	4 cut(s)	76, 106, 343, 391
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	137
NspV	TTCGAA	2 cut(s)	59, 112
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	264, 291
PleI	GAGTC	2 cut(s)	77, 211
PpsI	GAGTC	2 cut(s)	77, 211
PsiI	TTATAA	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	263, 290
Sau3AI	GATC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	78, 212
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	3 cut(s)	81, 110, 274
SfaNI	GCATC	1 cut(s)	242
SfuI	TTCGAA	2 cut(s)	59, 112
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	187, 382
SsiI	CCGC	3 cut(s)	148, 263, 275
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	7, 59, 112
TasI	AATT	2 cut(s)	187, 382
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	328, 376
TspGWI	ACGGA	2 cut(s)	240, 270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.