Prupe.7G271000_v2.0.a1

abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008529
Physical Location & Seq
Forward (+)
22204590 .. 22207242
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G271000.1

Sequence Viewer

Length: 987 bp
ATGGCATCGTATTCGTCGAGAGATGATAAGCCAGAAATTGCTGATCGGGATGCTAAGGAGAAGAAATCTGACAAGAAGAAGAAGGAGGGAGAGAATGATGAGGATGATGAGGGTGGATTTATCGATAGGGTGAAGGATTTCATTCATGACATTGGGGAGAAGATCGAGGGAGCAATTGGGTTCGGAAAGCCAACAGCGGATGTTAGTGCGATTCACATCCCTAGCATCACTCTCGAGAAGGCGGAGATCGTGGTGGATGTGCTGATCAAGAACCCAAATCCAGTGCCCATCCCTCTCATCGACATTAACTACTTGATCGAAAGTGATGGCAGGAAACTGGTCTCTGGCTTGATCCCTGATGCCGGAACAATCCATGCCCACGGAGAAGAGACTGTCAAAGTTCCAGTCCACTTGGTATACGATGACATCAAGAACACCTACGATGACATCAAGCCTGGAAGCATCATTCCTTACAGGTTCAAGGTCGATCTCATTGTCGATGTCCCTGTTCTCGGCAGACTCACTCTCCCCCTCGAGAAAACTGGAGAAATCCCTATCCCTTACAAACCCGATGTCGATGTTGAGAAGATCAAGTTTCAAGCCTTCTCCTTTGAAGAAACCGTTGCAGTCCTCCATGTGAAGCTGGAGAACATGAATGACTTCGACTTAGGCCTCAATGCTCTTGACTACGAGATTTGGCTCTCTGAAGTCAACATTGGCGGCGCACAGCTCTCCCAATCTGCGAATCTTGCTAAAAAGGGTGTCACTTTCATTGAGCTTCCCATCACCTTTAGGCCTAAGGATTTTGGGTCTGCGCTCTGGGATATGATTCGGGGAAAGGGTACCGGCTACACCATCAAAGGCAATATCAATGTGGACACGCCATTTGGAGCCATGAAGTTACCCATCGTCAAGGAAGGTGGTACTACACGCCTCAAGAAGAACAAGGAAGATGGCGGCAATGACGATGACGAGGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

329

Amino Acids

36.24

Weight (kDa)

4.78

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 842
AccI GTMKAC 1 cut(s) 417
AciI CCGC 4 cut(s) 197, 242, 720, 957
AclWI GGATC 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 2 cut(s) 844, 925
AfiI CCNNNNNNNGG 2 cut(s) 362, 512
AgsI TTSAA 3 cut(s) 481, 599, 614
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AluBI AGCT 3 cut(s) 643, 730, 778
AluI AGCT 3 cut(s) 643, 730, 778
Alw26I GTCTC 2 cut(s) 346, 383
AlwI GGATC 1 cut(s) 346
Ama87I CYCGRG 2 cut(s) 233, 533
AoxI GGCC 2 cut(s) 670, 794
ArsI GACNNNNNNTTYG 6 cut(s) 390, 422, 558, 590, 869, 901
Asp700I GAANNNNTTC 2 cut(s) 137, 659
Asp718I GGTACC 1 cut(s) 842
AspLEI GCGC 2 cut(s) 725, 817
AsuHPI GGTGA 2 cut(s) 142, 778
AvaI CYCGRG 2 cut(s) 233, 533
AxyI CCTNAGG 1 cut(s) 798
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 842
BccI CCATC 6 cut(s) 296, 320, 791, 863, 914, 947
BcgI CGANNNNNNTGC 3 cut(s) 28, 214, 248
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 346, 383
BfaI CTAG 2 cut(s) 222, 985
BisI GCNGC 2 cut(s) 721, 958
BlsI GCNGC 2 cut(s) 722, 959
Bme1390I CCNGG 1 cut(s) 456
BmeT110I CYCGRG 2 cut(s) 233, 533
BmiI GGNNCC 2 cut(s) 844, 892
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 5 cut(s) 14, 40, 234, 349, 471
BpmI CTGGAG 2 cut(s) 564, 665
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 920
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 512
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 4 cut(s) 281, 342, 404, 547
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 1 cut(s) 967
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 7 cut(s) 55, 109, 205, 216, 262, 288, 982
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 362, 512
BseMI GCAATG 1 cut(s) 967
BseNI ACTGG 4 cut(s) 281, 342, 404, 547
BseSI GKGCMC 1 cut(s) 288
BshFI GGCC 2 cut(s) 672, 796
BshNI GGYRCC 1 cut(s) 842
BshVI ATCGAT 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 233, 533
BsiSI CCGG 2 cut(s) 363, 846
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 362, 512
BsmAI GTCTC 2 cut(s) 346, 383
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 2 cut(s) 672, 796
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 2 cut(s) 233, 533
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
BspACI CCGC 4 cut(s) 197, 242, 720, 957
BspANI GGCC 2 cut(s) 672, 796
BspDI ATCGAT 1 cut(s) 123
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 844, 892
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 967
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 4 cut(s) 281, 342, 404, 547
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
BssNAI GTATAC 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 394, 622
Bst6I CTCTTC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 54, 667, 798
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 7 cut(s) 55, 109, 205, 216, 262, 288, 982
BstHHI GCGC 2 cut(s) 725, 817
BstKTI GATC 8 cut(s) 46, 165, 249, 267, 318, 354, 490, 591
BstMAI GTCTC 2 cut(s) 346, 383
BstMBI GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 288
BstZ17I GTATAC 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 2 cut(s) 672, 796
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 7 cut(s) 55, 109, 205, 216, 262, 288, 982
BtsIMutI CAGTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 145
CfoI GCGC 2 cut(s) 725, 817
Cfr10I RCCGGY 1 cut(s) 845
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 2 cut(s) 843, 924
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviAII CATG 5 cut(s) 146, 374, 635, 652, 895
CviQI GTAC 2 cut(s) 843, 924
DdeI CTNAG 3 cut(s) 54, 667, 798
DpnI GATC 8 cut(s) 45, 164, 248, 266, 317, 353, 489, 590
DpnII GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 257
Eco147I AGGCCT 2 cut(s) 672, 796
Eco31I GGTCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 726
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 233, 533
EcoRII CCWGG 1 cut(s) 454
FaeI CATG 5 cut(s) 149, 377, 638, 655, 898
FaiI YATR 7 cut(s) 147, 375, 418, 636, 653, 827, 896
FaqI GGGAC 1 cut(s) 488
FatI CATG 5 cut(s) 145, 373, 634, 651, 894
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 721, 958
FokI GGATG 6 cut(s) 62, 116, 203, 212, 269, 275
Fsp4HI GCNGC 2 cut(s) 721, 958
FspBI CTAG 2 cut(s) 222, 985
GlaI GCGC 2 cut(s) 724, 816
GluI GCNGC 2 cut(s) 721, 958
GsuI CTGGAG 2 cut(s) 564, 665
HaeIII GGCC 2 cut(s) 672, 796
HapII CCGG 2 cut(s) 363, 846
HhaI GCGC 2 cut(s) 725, 817
Hin1II CATG 5 cut(s) 149, 377, 638, 655, 898
Hin6I GCGC 2 cut(s) 723, 815
HinP1I GCGC 2 cut(s) 723, 815
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 4 cut(s) 211, 519, 745, 829
HpaII CCGG 2 cut(s) 363, 846
HphI GGTGA 2 cut(s) 142, 778
Hpy166II GTNNAC 4 cut(s) 409, 418, 712, 877
Hpy188I TCNGA 3 cut(s) 70, 185, 706
Hpy8I GTNNAC 4 cut(s) 409, 418, 712, 877
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 5 cut(s) 76, 127, 232, 613, 911
HpyCH4III ACNGT 2 cut(s) 394, 622
HpyCH4V TGCA 1 cut(s) 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 3 cut(s) 54, 667, 798
Hsp92II CATG 5 cut(s) 149, 377, 638, 655, 898
HspAI GCGC 2 cut(s) 723, 815
KpnI GGTACC 1 cut(s) 846
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
LmnI GCTCC 2 cut(s) 170, 890
LweI GCATC 5 cut(s) 14, 40, 234, 349, 471
MaeI CTAG 2 cut(s) 222, 985
MaeIII GTNAC 2 cut(s) 763, 900
MalI GATC 8 cut(s) 45, 164, 248, 266, 317, 353, 489, 590
MboI GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
MboII GAAGA 9 cut(s) 73, 88, 91, 172, 398, 598, 626, 952, 962
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 36, 174
MlyI GAGTC 1 cut(s) 513
MroXI GAANNNNTTC 2 cut(s) 137, 659
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 363, 846
MspR9I CCNGG 1 cut(s) 456
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeII GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
NlaIII CATG 5 cut(s) 149, 377, 638, 655, 898
NlaIV GGNNCC 2 cut(s) 844, 892
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 763
PaeR7I CTCGAG 2 cut(s) 233, 533
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 2 cut(s) 672, 796
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 137, 659
PfeI GAWTC 3 cut(s) 211, 745, 829
PkrI GCNGC 2 cut(s) 722, 959
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 844, 892
RsaI GTAC 2 cut(s) 844, 925
RsaNI GTAC 2 cut(s) 843, 924
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 721, 958
Sau3AI GATC 8 cut(s) 43, 162, 246, 264, 315, 351, 487, 588
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 440, 479, 486, 645, 732, 780, 791, 922
SfaNI GCATC 5 cut(s) 14, 40, 234, 349, 471
Sfr274I CTCGAG 2 cut(s) 233, 533
SlaI CTCGAG 2 cut(s) 233, 533
SmlI CTYRAG 3 cut(s) 233, 533, 935
SmoI CTYRAG 3 cut(s) 233, 533, 935
Sse9I AATT 2 cut(s) 36, 174
SseBI AGGCCT 2 cut(s) 672, 796
SsiI CCGC 4 cut(s) 197, 242, 720, 957
SspMI CTAG 2 cut(s) 222, 985
StuI AGGCCT 2 cut(s) 672, 796
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 394, 622
TasI AATT 2 cut(s) 36, 174
TauI GCSGC 2 cut(s) 723, 960
TfiI GAWTC 3 cut(s) 211, 745, 829
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 763
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 5 cut(s) 130, 134, 668, 760, 911
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 288
XhoI CTCGAG 2 cut(s) 233, 533
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 137, 659
XspI CTAG 2 cut(s) 222, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.