MD02G1000600.v1.1

abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0008529
Physical Location & Seq
Forward (+)
15438 .. 16485
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1000600.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCATCGTATTCGTCTGATGGTAAGCCAGAAAATGTGGATCGGGGTGCTAAGGTGAAGAAAGATCACAAGGAGGAGGAGGGGGAGGATGAGGGTGGATTTGTTGACAAGGTGAAGGATTTCATTCATGACATTGGGGAGAAGATAGAGGGTACCATTGGATTCGGCAAGCCAACCGCCGATGTTACTGCCATTCACATCCCTAGCATCAATCTCGAAAAGGCCGAGATCGTGGTGGATGTGCTCATCAAGAACCCTAATCCGGTTCCCATCCCTCTCATCGATATTAACTACTTGATCGAAAGTGATGGAAGGAAACTTGTCTCCGGGCTGATCCCTGATGCTGGGACAATCCATGCCCACCCTGGAAGCAACATTCCATACAGGGTCAAGGTCGACCTCATTGTGGATGTCCCTGTCATCGGCAGAATCACTATCCCCCTTGAAAAAACTGGAGAAATCCCCATCCCTTACAAGCCTGATGTCGATGTTGAGAAGATAAGGTTTCAAACCTTCTCCTTTGAAGAAACCGTTGCTGTCCTTCATTTGAAGCTGGAGAACATGAATGACTTTGACTTAGACCTCAATGTTCTAGACTACGAGATTTGGCTCTGTGATGTCAGCATTGGAGGTGCAGAACTCTCCAAGTTTGCCAATCTTGCTAAAAAGGGCGTCACTTATGTTAACGTTCCCATTACCTTCAGGCCTAAGGATTTTGGGTCAGCACTCTGGGATATGATTCGGGAAAAGGGTACTGGCTACACCATCAAGGGGAATATCAATGTGGACACGCCCTTTGGAGCCATGAAGTTGCCGATCGTCAAGGAGGGTGGTACTACACGCCTTAAGAAGAACAAGGAAGATGGCGACGACGACGATGAGGTAATGTGTATGTATGTAAACTATGTGTGCATTCTGCATGATTCTTCTAGATTAAATAGTGGATCGTTTATAGTTAATATGATATCTCTTGGATCCATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

329

Amino Acids

36.22

Weight (kDa)

4.91

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 182 - 277 8e-17 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 396
AciI CCGC 1 cut(s) 177
AclI AACGTT 1 cut(s) 687
AclWI GGATC 5 cut(s) 48, 328, 952, 969, 982
AcuI CTGAAG 1 cut(s) 685
AcyI GRCGYC 1 cut(s) 672
AfaI GTAC 3 cut(s) 154, 754, 835
AfiI CCNNNNNNNGG 5 cut(s) 262, 344, 406, 422, 771
AflII CTTAAG 1 cut(s) 845
AgsI TTSAA 4 cut(s) 446, 509, 524, 550
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 1 cut(s) 553
AluI AGCT 1 cut(s) 553
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 5 cut(s) 48, 328, 952, 969, 982
AoxI GGCC 2 cut(s) 222, 704
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
Asp700I GAANNNNTTC 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 67, 124
AxyI CCTNAGG 1 cut(s) 708
BamHI GGATCC 1 cut(s) 974
BanI GGYRCC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 6 cut(s) 14, 278, 302, 473, 773, 857
BcgI CGANNNNNNTGC 5 cut(s) 28, 170, 196, 204, 230
BciT130I CCWGG 1 cut(s) 366
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 3 cut(s) 204, 593, 930
BfrI CTTAAG 1 cut(s) 845
Bme1390I CCNGG 2 cut(s) 328, 366
BmiI GGNNCC 4 cut(s) 154, 267, 802, 976
BmrFI CCNGG 2 cut(s) 328, 366
BmsI GCATC 3 cut(s) 14, 216, 331
BpmI CTGGAG 2 cut(s) 474, 575
Bpu10I CCTNAGC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 344, 406, 422, 771
Bse1I ACTGG 2 cut(s) 457, 760
Bse21I CCTNAGG 1 cut(s) 708
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 6 cut(s) 94, 198, 244, 270, 415, 465
BseLI CCNNNNNNNGG 5 cut(s) 262, 344, 406, 422, 771
BseNI ACTGG 2 cut(s) 457, 760
BseRI GAGGAG 2 cut(s) 89, 92
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 2 cut(s) 224, 706
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 819
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 263, 327
BslFI GGGAC 2 cut(s) 361, 398
BslI CCNNNNNNNGG 5 cut(s) 262, 344, 406, 422, 771
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 361, 398
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 2 cut(s) 224, 706
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 224, 706
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 4 cut(s) 154, 267, 802, 976
BspPI GGATC 5 cut(s) 48, 328, 952, 969, 982
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 845
BsrI ACTGG 2 cut(s) 457, 760
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
BssNI GRCGYC 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 532
BstACI GRCGYC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 845
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 51, 577, 708
BstF5I GGATG 6 cut(s) 94, 198, 244, 270, 415, 465
BstKTI GATC 8 cut(s) 43, 67, 231, 300, 336, 819, 947, 977
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
BstMCI CGRYCG 1 cut(s) 819
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 326, 364
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 2 cut(s) 224, 706
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 6 cut(s) 94, 198, 244, 270, 415, 465
Cac8I GCNNGC 1 cut(s) 170
CciI TCATGA 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 661
Csp6I GTAC 3 cut(s) 153, 753, 834
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 5 cut(s) 128, 356, 562, 805, 920
CviQI GTAC 3 cut(s) 153, 753, 834
DdeI CTNAG 3 cut(s) 51, 577, 708
DpnI GATC 8 cut(s) 42, 66, 230, 299, 335, 818, 946, 976
DpnII GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
Eco147I AGGCCT 1 cut(s) 706
Eco32I GATATC 1 cut(s) 966
Eco57I CTGAAG 1 cut(s) 685
Eco81I CCTNAGG 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 966
FaeI CATG 5 cut(s) 131, 359, 565, 808, 923
FaqI GGGAC 2 cut(s) 361, 398
FatI CATG 5 cut(s) 127, 355, 561, 804, 919
FblI GTMKAC 1 cut(s) 396
FokI GGATG 6 cut(s) 101, 185, 251, 257, 422, 452
FspBI CTAG 3 cut(s) 204, 593, 930
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 2 cut(s) 474, 575
HaeIII GGCC 2 cut(s) 224, 706
HapII CCGG 2 cut(s) 263, 327
HgaI GACGC 1 cut(s) 661
Hin1I GRCGYC 1 cut(s) 672
Hin1II CATG 5 cut(s) 131, 359, 565, 808, 923
HincII GTYRAC 3 cut(s) 106, 397, 685
HindII GTYRAC 3 cut(s) 106, 397, 685
HinfI GANTC 4 cut(s) 162, 429, 739, 923
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 2 cut(s) 263, 327
HphI GGTGA 2 cut(s) 67, 124
Hpy166II GTNNAC 5 cut(s) 106, 397, 685, 787, 901
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 6 cut(s) 128, 215, 250, 593, 743, 930
Hpy8I GTNNAC 5 cut(s) 106, 397, 685, 787, 901
Hpy99I CGWCG 3 cut(s) 872, 875, 878
HpyAV CCTTC 5 cut(s) 109, 306, 523, 551, 709
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 3 cut(s) 635, 912, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 3 cut(s) 51, 577, 708
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 672
Hsp92II CATG 5 cut(s) 131, 359, 565, 808, 923
KpnI GGTACC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
LmnI GCTCC 1 cut(s) 800
LweI GCATC 3 cut(s) 14, 216, 331
MaeI CTAG 3 cut(s) 204, 593, 930
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 184, 673
MalI GATC 8 cut(s) 42, 66, 230, 299, 335, 818, 946, 976
MboI GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
MboII GAAGA 7 cut(s) 70, 154, 508, 536, 862, 872, 918
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 5 cut(s) 288, 684, 846, 935, 957
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 2 cut(s) 263, 327
MspR9I CCNGG 2 cut(s) 328, 366
Mva1269I GAATGC 1 cut(s) 912
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 659
NciI CCSGG 1 cut(s) 328
NdeII GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
NlaIII CATG 5 cut(s) 131, 359, 565, 808, 923
NlaIV GGNNCC 4 cut(s) 154, 267, 802, 976
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 673
PagI TCATGA 1 cut(s) 127
PceI AGGCCT 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 4 cut(s) 162, 429, 739, 923
Ple19I CGATCG 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 154, 267, 802, 976
PsuI RGATCY 1 cut(s) 974
PvuI CGATCG 1 cut(s) 819
RsaI GTAC 3 cut(s) 154, 754, 835
RsaNI GTAC 3 cut(s) 153, 753, 834
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 5 cut(s) 288, 684, 846, 935, 957
Sau3AI GATC 8 cut(s) 40, 64, 228, 297, 333, 816, 944, 974
ScrFI CCNGG 2 cut(s) 328, 366
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 3 cut(s) 14, 216, 331
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SseBI AGGCCT 1 cut(s) 706
SsiI CCGC 1 cut(s) 177
SspMI CTAG 3 cut(s) 204, 593, 930
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 2 cut(s) 326, 364
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 690
TaqI TCGA 5 cut(s) 216, 282, 300, 396, 486
TfiI GAWTC 4 cut(s) 162, 429, 739, 923
Tru1I TTAA 5 cut(s) 288, 684, 846, 935, 957
Tru9I TTAA 5 cut(s) 288, 684, 846, 935, 957
TseFI GTSAC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 5 cut(s) 112, 116, 533, 578, 821
Vha464I CTTAAG 1 cut(s) 845
XbaI TCTAGA 2 cut(s) 592, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 3 cut(s) 204, 593, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.