Rh2DG001400

abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008529
Physical Location & Seq
Reverse (-)
130041 .. 132703
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG001400.1

Sequence Viewer

Length: 963 bp
ATGGCATCCTATGATGACTCAGAAAGATCAGATCGCGGCATTAAGAAGGAGGAGGAGAAAAAACACAAAGGGGAGGAAGAGGAGGGTGACAGCTTCATAGATAAGGTGAAGGATTTCATTCATGACATTGGCGAGAAGATCGAGGGAGCTATCGGATTTGGTAAGCCCACTGCAGATGTGGCTGCAATTCACATCCCTTGCATAAATCTGGAGAAGGCAGAGATTGTGGTTGATGTGCTTATTAAGAACCCAAATCCTGTGCCCATCCCGCTCATTGACATAAACTACTTGATTGAAAGTGATGGTAGGAAACTGGTGTCCGGATTGATCCCGGACGCTGGAACAATCCAGGCCCATGGAGAAGAGACTGTCAAAGTTCCACTTCACTTGATTTACGATGACATCAAGAGCACCTACAATGATATCGAGCCTGGAAGCATCATTCCCTACAGGATCAAGGTTGATCTCATTGTGGATGTCCCTGTTCTTGGCAGGCTCACTCTCCCACTTGAGAAAACTGGAGAGATCCCCATCCCCTACAAACCTGATGTTGATGTTGACAAAATCAAGTTTCAGAAATTCTCCTTTGAAGAAACTGTTGCAGTGCTCCATTTGAAGCTCGAGAACATGAATGACTTTGACTTGGGCCTCAATGCTTTAGACTACGAGATTTGGCTCTGTGAGGTCAGCATTGGAGGCGCTGAGCTCTCCAAATCTGCCAACCTTGAAAAGAAAGGTATCACTTTTGTTGATGTTCCTATTACCTTCAGGCCAAAGGATTTTGGCTCTGCGCTCTGGGATATGATCCGAGGTAGGGGTACTGGTTATACCTTCAAAGGCCATATCGATGTTGATACTCCATTTGGGGCCATGAAGTTACCCATTGTTAAGGAGGGTGGTACCACACGCCTCAAGAAGAGCAAGGAAGATGGTGGCGACGATGATGACGATGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

320

Amino Acids

35.5

Weight (kDa)

4.69

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 79 - 174 2.2e-18 Late embryogenesis abundant protein
LEA_2 PF03168 204 - 299 9.4e-17 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 899
AccB1I GGYRCC 1 cut(s) 899
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 2 cut(s) 36, 269
AclWI GGATC 4 cut(s) 322, 461, 520, 799
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 751
AfaI GTAC 2 cut(s) 820, 901
AfiI CCNNNNNNNGG 3 cut(s) 338, 488, 814
AgsI TTSAA 5 cut(s) 296, 590, 616, 728, 835
AjnI CCWGG 2 cut(s) 348, 430
AluBI AGCT 4 cut(s) 93, 149, 619, 706
AluI AGCT 4 cut(s) 93, 149, 619, 706
Alw21I GWGCWC 3 cut(s) 413, 609, 708
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 4 cut(s) 322, 461, 520, 799
Ama87I CYCGRG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 320
AoxI GGCC 5 cut(s) 351, 646, 770, 838, 867
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 899
AspLEI GCGC 2 cut(s) 701, 793
AspS9I GGNCC 3 cut(s) 352, 646, 867
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 98, 118
AvaI CYCGRG 1 cut(s) 620
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 1 cut(s) 708
Bbv12I GWGCWC 3 cut(s) 413, 609, 708
BbvI GCAGC 1 cut(s) 169
BccI CCATC 4 cut(s) 272, 296, 539, 923
BciT130I CCWGG 2 cut(s) 350, 432
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 961
BfmI CTRYAG 2 cut(s) 171, 448
BfoI RGCGCY 1 cut(s) 702
BisI GCNGC 2 cut(s) 37, 183
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 2 cut(s) 38, 184
Bme1390I CCNGG 3 cut(s) 332, 350, 432
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 3 cut(s) 352, 646, 867
BmiI GGNNCC 2 cut(s) 868, 901
BmrFI CCNGG 3 cut(s) 332, 350, 432
BmsI GCATC 2 cut(s) 14, 447
BpmI CTGGAG 2 cut(s) 230, 540
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 530, 896
BpuMI CCSGG 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 355, 808
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 488, 814
Bse1I ACTGG 3 cut(s) 318, 523, 826
Bse8I GATNNNNATC 1 cut(s) 530
BseAI TCCGGA 1 cut(s) 320
BseBI CCWGG 2 cut(s) 350, 432
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 355, 808
BseGI GGATG 5 cut(s) 5, 192, 264, 481, 531
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 3 cut(s) 338, 488, 814
BseMII CTCAG 2 cut(s) 33, 693
BseNI ACTGG 3 cut(s) 318, 523, 826
BseRI GAGGAG 3 cut(s) 65, 68, 95
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 5 cut(s) 353, 648, 772, 840, 869
BshNI GGYRCC 1 cut(s) 899
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 3 cut(s) 413, 609, 708
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 321, 332
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 338, 488, 814
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 5 cut(s) 353, 648, 772, 840, 869
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 4 cut(s) 264, 413, 609, 708
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
Bsp1720I GCTNAGC 1 cut(s) 702
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 36, 269
BspANI GGCC 5 cut(s) 353, 648, 772, 840, 869
BspCNI CTCAG 2 cut(s) 32, 694
BspDI ATCGAT 1 cut(s) 846
BspEI TCCGGA 1 cut(s) 320
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 868, 901
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 4 cut(s) 322, 461, 520, 799
BspQI GCTCTTC 1 cut(s) 911
BspT107I GGYRCC 1 cut(s) 899
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 3 cut(s) 318, 523, 826
BssECI CCNNGG 2 cut(s) 355, 808
BssMI GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 2 cut(s) 350, 432
Bst4CI ACNGT 2 cut(s) 370, 598
Bst6I CTCTTC 3 cut(s) 72, 357, 911
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 19, 702
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 5 cut(s) 5, 192, 264, 481, 531
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 2 cut(s) 701, 793
BstKTI GATC 8 cut(s) 29, 34, 141, 330, 456, 466, 528, 807
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
BstMWI GCNNNNNNNGC 3 cut(s) 179, 268, 696
BstNI CCWGG 2 cut(s) 350, 432
BstSCI CCNGG 3 cut(s) 330, 348, 430
BstSFI CTRYAG 2 cut(s) 171, 448
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 5 cut(s) 353, 648, 772, 840, 869
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 5 cut(s) 5, 192, 264, 481, 531
BtsI GCAGTG 2 cut(s) 168, 609
BtsIMutI CAGTG 2 cut(s) 168, 609
Cac8I GCNNGC 1 cut(s) 494
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 701, 793
Cfr13I GGNCC 3 cut(s) 352, 646, 867
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 819, 900
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 4 cut(s) 122, 356, 628, 871
CviQI GTAC 2 cut(s) 819, 900
DdeI CTNAG 2 cut(s) 19, 702
DpnI GATC 8 cut(s) 28, 33, 140, 329, 455, 465, 527, 806
DpnII GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
Eam1104I CTCTTC 3 cut(s) 72, 357, 911
EarI CTCTTC 3 cut(s) 72, 357, 911
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 708
Eco32I GATATC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 348, 430
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 4 cut(s) 125, 359, 631, 874
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 464
FatI CATG 4 cut(s) 121, 355, 627, 870
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 37, 183
FokI GGATG 4 cut(s) 179, 251, 488, 518
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 2 cut(s) 37, 183
FspBI CTAG 1 cut(s) 961
GlaI GCGC 2 cut(s) 700, 792
GluI GCNGC 2 cut(s) 37, 183
GsuI CTGGAG 2 cut(s) 230, 540
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 5 cut(s) 353, 648, 772, 840, 869
HapII CCGG 2 cut(s) 321, 332
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 701, 793
Hin1II CATG 4 cut(s) 125, 359, 631, 874
Hin6I GCGC 2 cut(s) 699, 791
HinP1I GCGC 2 cut(s) 699, 791
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 321, 332
HphI GGTGA 2 cut(s) 98, 118
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 5 cut(s) 22, 31, 155, 576, 809
Hpy188III TCNNGA 6 cut(s) 122, 209, 321, 406, 622, 913
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 941
HpyAV CCTTC 5 cut(s) 40, 103, 208, 775, 841
HpyCH4III ACNGT 2 cut(s) 370, 598
HpyCH4V TGCA 4 cut(s) 173, 185, 201, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 268, 696
HpyF3I CTNAG 2 cut(s) 19, 702
Hsp92II CATG 4 cut(s) 125, 359, 631, 874
HspAI GCGC 2 cut(s) 699, 791
Kpn2I TCCGGA 1 cut(s) 320
KpnI GGTACC 1 cut(s) 903
Kzo9I GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 2 cut(s) 146, 612
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 14, 447
MaeI CTAG 1 cut(s) 961
MaeIII GTNAC 2 cut(s) 86, 876
MalI GATC 8 cut(s) 28, 33, 140, 329, 455, 465, 527, 806
MbiI CCGCTC 1 cut(s) 271
MboI GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
MboII GAAGA 6 cut(s) 89, 148, 374, 602, 928, 938
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 4 cut(s) 264, 413, 609, 708
MluCI AATT 2 cut(s) 186, 578
MlyI GAGTC 1 cut(s) 11
MroI TCCGGA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 3 cut(s) 42, 243, 888
MslI CAYNNNNRTG 1 cut(s) 846
MspI CCGG 2 cut(s) 321, 332
MspR9I CCNGG 3 cut(s) 332, 350, 432
MvaI CCWGG 2 cut(s) 350, 432
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 179, 268, 696
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 1 cut(s) 355
NdeII GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
NlaIII CATG 4 cut(s) 125, 359, 631, 874
NlaIV GGNNCC 2 cut(s) 868, 901
NmuCI GTSAC 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 620
PagI TCATGA 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 911
PcsI WCGNNNNNNNCGW 1 cut(s) 945
PdmI GAANNNNTTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 2 cut(s) 38, 184
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 348, 430
PspGI CCWGG 2 cut(s) 348, 430
PspN4I GGNNCC 2 cut(s) 868, 901
PspPI GGNCC 3 cut(s) 352, 646, 867
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 2 cut(s) 820, 901
RsaNI GTAC 2 cut(s) 819, 900
RseI CAYNNNNRTG 1 cut(s) 846
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 3 cut(s) 42, 243, 888
SatI GCNGC 2 cut(s) 37, 183
Sau3AI GATC 8 cut(s) 26, 31, 138, 327, 453, 463, 525, 804
Sau96I GGNCC 3 cut(s) 352, 646, 867
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 332, 350, 432
SduI GDGCHC 4 cut(s) 264, 413, 609, 708
SfaNI GCATC 2 cut(s) 14, 447
SfcI CTRYAG 2 cut(s) 171, 448
Sfr274I CTCGAG 1 cut(s) 620
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 3 cut(s) 509, 620, 911
SmoI CTYRAG 3 cut(s) 509, 620, 911
Sse9I AATT 2 cut(s) 186, 578
SsiI CCGC 2 cut(s) 36, 269
SspMI CTAG 1 cut(s) 961
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 3 cut(s) 330, 348, 430
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 370, 598
TaqI TCGA 4 cut(s) 141, 426, 621, 846
TasI AATT 2 cut(s) 186, 578
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 3 cut(s) 42, 243, 888
Tru9I TTAA 3 cut(s) 42, 243, 888
TscAI CASTG 2 cut(s) 175, 609
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 5 cut(s) 85, 106, 110, 644, 887
TspRI CASTG 2 cut(s) 175, 609
XapI RAATTY 1 cut(s) 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.