Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Reverse (-)

435497 .. 439033

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAGTCGCTTCTCACTCCCCGCATTCTATACTCTGTTACAAACAATCGAGGTTGACATCGACGTCGTCTTTGTTGCCGCTCTTCACTCACAAGGGACTAACTGTCGGGTGCTCCCCGTGCAGACGTCCCGTTGTTTTCGGAAAGCTAACTAGTTCTGCTCGTCGTAGCATTTTATGCATTGCAAAGAAGCCAGTTGGGATATCATGGTGTGATGTTGATGCGAAAGAGGAGTTTGCTAGATCTTATAATGTCAAATTGCATAACCAGCGTAAATTGTCCAGGCATACAGTTGTACAATGTGGACTTGTTGGAACTGGAAGCCCTGATGCTGCCTTACCAGAAGTAAATATCGTCTCAAAAGTTAGGGGGCTGTGCTTTTATGCCATTGCTGCCTTTAATGCTATTTATCTTTTTGCACTGATGGTAGTAGCCCATCCTTTCGTTCTGTTGTTCGATCGATATAGAAGGCGAGCTCATGCTTTTATTGCCAAAATTTGGGCTACATTTGCTGTTACTCCATTTCTCAATATCAAGTTTGAGGGACTGGAGAATTTGCCTCCTCCAGATGTTCCTGCTGTATATGTTTCCAACCACCAGAGCTTTTTAGACATATATGTTCTTCTCACTATTGGGAGACCCTATAAGTTTATTAGCAAGACTAGCATATTCCTCATTCCCATTATTGGGTGGGCTATGTTTCTAATTGGCGTCATTCCTTTAAGGCGCATGGACAGAAAAAGCCAATTGGAATGTGTTAAACGTTGCATATATCTTCTCCAGAAGGGGTCCTCTGTCTTTTTCTTCCCTGAGGGAACACGCAGTAAAGATGGAAAATTAGGGGATTTCAAGAAAGGTGCCTTCAGTCTTGCAGCAAAAACAAAGGTGCCAGTGGTGCCTATTACTCTTATAGGAACTGGGAACATAATGCCTGTGGGAAAGGAGGGTATCTTGAACACTGGACCTGTTAAAGTTGTTATACATAAGCCTATAGAAGGAAATGATACAGAAACACTGCGCAGAGAAAGTAGAAACGTAATTGCAGAAGCACTCGATTTTCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

356

Amino Acids

39.39

Weight (kDa)

9.84

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	178 - 250	4.6e-14	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AasI	GACNNNNNNGTC	1 cut(s)	64
AatII	GACGTC	2 cut(s)	68, 130
Acc16I	TGCGCA	1 cut(s)	1019
AccB1I	GGYRCC	3 cut(s)	857, 886, 895
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccBSI	CCGCTC	1 cut(s)	82
AciI	CCGC	2 cut(s)	23, 80
AclI	AACGTT	1 cut(s)	763
AcsI	RAATTY	2 cut(s)	495, 553
AcuI	CTGAAG	1 cut(s)	847
AcyI	GRCGYC	3 cut(s)	65, 127, 711
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
AgsI	TTSAA	3 cut(s)	850, 955, 1061
AhdI	GACNNNNNGTC	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	148, 476, 603
AluI	AGCT	3 cut(s)	148, 476, 603
Alw21I	GWGCWC	2 cut(s)	116, 478
Alw26I	GTCTC	2 cut(s)	361, 631
ApeKI	GCWGC	3 cut(s)	332, 392, 872
ApoI	RAATTY	2 cut(s)	495, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspLEI	GCGC	2 cut(s)	729, 1020
AspS9I	GGNCC	2 cut(s)	789, 962
AvaII	GGWCC	2 cut(s)	789, 962
AxyI	CCTNAGG	1 cut(s)	810
BanI	GGYRCC	3 cut(s)	857, 886, 895
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	2 cut(s)	116, 478
BbvI	GCAGC	3 cut(s)	319, 379, 884
BccI	CCATC	3 cut(s)	418, 444, 824
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	361, 631
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	3 cut(s)	153, 240, 663
BfmI	CTRYAG	1 cut(s)	990
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	4 cut(s)	80, 333, 393, 873
BlsI	GCNGC	4 cut(s)	81, 334, 394, 874
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	789, 962
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	789, 962
BmiI	GGNNCC	4 cut(s)	790, 859, 888, 897
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	211, 319
BmuI	ACTGGG	1 cut(s)	927
BpmI	CTGGAG	3 cut(s)	549, 569, 764
Bsa29I	ATCGAT	1 cut(s)	460
BsaHI	GRCGYC	3 cut(s)	65, 127, 711
BsaI	GGTCTC	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
Bse1I	ACTGG	6 cut(s)	194, 322, 552, 890, 922, 964
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	2 cut(s)	180, 387
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	460
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
BseMI	GCAATG	2 cut(s)	180, 387
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	6 cut(s)	194, 322, 552, 890, 922, 964
BseRI	GAGGAG	2 cut(s)	245, 552
BseXI	GCAGC	3 cut(s)	319, 379, 884
BsgI	GTGCAG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	460
BshNI	GGYRCC	3 cut(s)	857, 886, 895
BshVI	ATCGAT	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	116, 478
BslFI	GGGAC	3 cut(s)	111, 114, 558
BslI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
BsmAI	GTCTC	2 cut(s)	361, 631
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	3 cut(s)	111, 114, 558
BsmI	GAATGC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	116, 478
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	242, 457
BspACI	CCGC	2 cut(s)	23, 80
BspCNI	CTCAG	1 cut(s)	802
BspDI	ATCGAT	1 cut(s)	460
BspLI	GGNNCC	4 cut(s)	790, 859, 888, 897
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	3 cut(s)	857, 886, 895
BspTNI	GGTCTC	1 cut(s)	631
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	180, 387
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	6 cut(s)	194, 322, 552, 890, 922, 964
BssMI	GATC	2 cut(s)	242, 457
BssNI	GRCGYC	3 cut(s)	65, 127, 711
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	106, 292
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	65, 127, 711
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	810
BstENI	CCTNNNNNAGG	1 cut(s)	993
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	2 cut(s)	729, 1020
BstKTI	GATC	2 cut(s)	245, 460
BstMAI	GTCTC	2 cut(s)	361, 631
BstMBI	GATC	2 cut(s)	242, 457
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	9 cut(s)	120, 177, 268, 392, 401, 488, 509, 663, 895
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	3 cut(s)	319, 379, 884
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	810
BsuTUI	ATCGAT	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	4 cut(s)	419, 897, 957, 1013
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	2 cut(s)	729, 1020
Cfr13I	GGNCC	2 cut(s)	789, 962
ClaI	ATCGAT	1 cut(s)	460
CseI	GACGC	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	3 cut(s)	207, 479, 730
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	810
DpnI	GATC	2 cut(s)	244, 459
DpnII	GATC	2 cut(s)	242, 457
DrdI	GACNNNNNNGTC	1 cut(s)	64
DriI	GACNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	789, 962
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	847
Eco81I	CCTNAGG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	993
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	3 cut(s)	210, 482, 733
FaqI	GGGAC	3 cut(s)	111, 114, 558
FatI	CATG	3 cut(s)	206, 478, 729
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	80, 333, 393, 873
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	4 cut(s)	80, 333, 393, 873
FspBI	CTAG	3 cut(s)	153, 240, 663
FspI	TGCGCA	1 cut(s)	1019
GlaI	GCGC	2 cut(s)	728, 1019
GluI	GCNGC	4 cut(s)	80, 333, 393, 873
GsuI	CTGGAG	3 cut(s)	549, 569, 764
HgaI	GACGC	1 cut(s)	700
HhaI	GCGC	2 cut(s)	729, 1020
Hin1I	GRCGYC	3 cut(s)	65, 127, 711
Hin1II	CATG	3 cut(s)	210, 482, 733
Hin6I	GCGC	2 cut(s)	727, 1018
HinP1I	GCGC	2 cut(s)	727, 1018
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
Hpy166II	GTNNAC	2 cut(s)	57, 305
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	4 cut(s)	566, 781, 850, 952
Hpy8I	GTNNAC	2 cut(s)	57, 305
Hpy99I	CGWCG	3 cut(s)	67, 70, 168
HpyAV	CCTTC	4 cut(s)	462, 778, 871, 989
HpyCH4III	ACNGT	2 cut(s)	106, 292
HpyCH4IV	ACGT	4 cut(s)	65, 127, 763, 1035
HpyCH4V	TGCA	8 cut(s)	123, 180, 185, 262, 419, 768, 872, 1043
HpyF10VI	GCNNNNNNNGC	9 cut(s)	120, 177, 268, 392, 401, 488, 509, 663, 895
HpyF3I	CTNAG	1 cut(s)	810
HpySE526I	ACGT	4 cut(s)	65, 127, 763, 1035
Hsp92I	GRCGYC	3 cut(s)	65, 127, 711
Hsp92II	CATG	3 cut(s)	210, 482, 733
HspAI	GCGC	2 cut(s)	727, 1018
Kzo9I	GATC	2 cut(s)	242, 457
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	319, 379, 884
LweI	GCATC	2 cut(s)	211, 319
MaeI	CTAG	3 cut(s)	153, 240, 663
MaeII	ACGT	4 cut(s)	65, 127, 763, 1035
MaeIII	GTNAC	2 cut(s)	38, 514
MalI	GATC	2 cut(s)	244, 459
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	242, 457
MboII	GAAGA	4 cut(s)	76, 614, 767, 796
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	116, 478
MluCI	AATT	8 cut(s)	257, 275, 495, 553, 705, 746, 836, 1038
MmeI	TCCRAC	2 cut(s)	292, 615
MnlI	CCTC	9 cut(s)	45, 223, 535, 570, 573, 683, 802, 805, 937
Mph1103I	ATGCAT	1 cut(s)	182
MseI	TTAA	4 cut(s)	399, 722, 759, 969
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	9 cut(s)	120, 177, 268, 392, 401, 488, 509, 663, 895
NdeII	GATC	2 cut(s)	242, 457
NlaIII	CATG	3 cut(s)	210, 482, 733
NlaIV	GGNNCC	4 cut(s)	790, 859, 888, 897
NsbI	TGCGCA	1 cut(s)	1019
NsiI	ATGCAT	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	81, 334, 394, 874
Ple19I	CGATCG	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	789
PsiI	TTATAA	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	763
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	4 cut(s)	790, 859, 888, 897
PspPI	GGNCC	2 cut(s)	789, 962
PspPPI	RGGWCCY	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	399, 722, 759, 969
SatI	GCNGC	4 cut(s)	80, 333, 393, 873
Sau3AI	GATC	2 cut(s)	242, 457
Sau96I	GGNCC	2 cut(s)	789, 962
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	116, 478
SfaNI	GCATC	2 cut(s)	211, 319
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	2 cut(s)	789, 962
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	8 cut(s)	257, 275, 495, 553, 705, 746, 836, 1038
SsiI	CCGC	2 cut(s)	23, 80
SspMI	CTAG	3 cut(s)	153, 240, 663
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	106, 292
TaiI	ACGT	4 cut(s)	68, 130, 766, 1038
TaqI	TCGA	5 cut(s)	50, 62, 456, 460, 1053
TasI	AATT	8 cut(s)	257, 275, 495, 553, 705, 746, 836, 1038
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	1 cut(s)	82
Tru1I	TTAA	4 cut(s)	399, 722, 759, 969
Tru9I	TTAA	4 cut(s)	399, 722, 759, 969
TscAI	CASTG	4 cut(s)	426, 897, 964, 1020
TseI	GCWGC	3 cut(s)	332, 392, 872
TspRI	CASTG	4 cut(s)	426, 897, 964, 1020
Tth111I	GACNNNGTC	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	789, 962
XagI	CCTNNNNNAGG	1 cut(s)	993
XapI	RAATTY	2 cut(s)	495, 553
XspI	CTAG	3 cut(s)	153, 240, 663
ZraI	GACGTC	2 cut(s)	66, 128
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.